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Borja A, Berg T, Gundersen H, Hagen AG, Hancke K, Korpinen S, Leal MC, Luisetti T, Menchaca I, Murray C, Piet G, Pitois S, Rodríguez-Ezpeleta N, Sample JE, Talbot E, Uyarra MC. Innovative and practical tools for monitoring and assessing biodiversity status and impacts of multiple human pressures in marine systems. ENVIRONMENTAL MONITORING AND ASSESSMENT 2024; 196:694. [PMID: 38963575 DOI: 10.1007/s10661-024-12861-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2024] [Accepted: 06/22/2024] [Indexed: 07/05/2024]
Abstract
Human activities at sea can produce pressures and cumulative effects on ecosystem components that need to be monitored and assessed in a cost-effective manner. Five Horizon European projects have joined forces to collaboratively increase our knowledge and skills to monitor and assess the ocean in an innovative way, assisting managers and policy-makers in taking decisions to maintain sustainable activities at sea. Here, we present and discuss the status of some methods revised during a summer school, aiming at better management of coasts and seas. We include novel methods to monitor the coastal and ocean waters (e.g. environmental DNA, drones, imaging and artificial intelligence, climate modelling and spatial planning) and innovative tools to assess the status (e.g. cumulative impacts assessment, multiple pressures, Nested Environmental status Assessment Tool (NEAT), ecosystem services assessment or a new unifying approach). As a concluding remark, some of the most important challenges ahead are assessing the pros and cons of novel methods, comparing them with benchmark technologies and integrating these into long-standing time series for data continuity. This requires transition periods and careful planning, which can be covered through an intense collaboration of current and future European projects on marine biodiversity and ecosystem health.
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Affiliation(s)
- Angel Borja
- AZTI, Marine Research, Basque Research and Technology Alliance (BRTA), Herrera Kaia, Portualdea S/N, 20110, Pasaia, Spain.
| | - Torsten Berg
- MariLim Aquatic Research GmbH, 24232, Schönkirchen, Germany
| | - Hege Gundersen
- Norwegian Institute for Water Research (NIVA), Oslo, Norway
| | | | - Kasper Hancke
- Norwegian Institute for Water Research (NIVA), Oslo, Norway
| | - Samuli Korpinen
- Finnish Environment Institute, Marine Research Centre, Helsinki, Finland
| | - Miguel C Leal
- Science Crunchers, Scitation Lda, TecLabs - Campus da FCUL, 1749-016, Lisbon, Portugal
| | | | - Iratxe Menchaca
- AZTI, Marine Research, Basque Research and Technology Alliance (BRTA), Herrera Kaia, Portualdea S/N, 20110, Pasaia, Spain
| | - Ciaran Murray
- NIVA Denmark Water Research, 2300, Copenhagen S, Denmark
| | - GerJan Piet
- Wageningen University and Research, Wageningen Marine Research, P.O. Box 57, 1780 AB, Den Helder, the Netherlands
| | | | - Naiara Rodríguez-Ezpeleta
- AZTI, Marine Research, Basque Research and Technology Alliance (BRTA), Txatxarramendi Ugartea Z/G, 48395, Sukarrieta, Spain
| | - James E Sample
- Norwegian Institute for Water Research (NIVA), Oslo, Norway
| | - Elizabeth Talbot
- Plymouth Marine Laboratory, Prospect Place, Plymouth, PL1 3DH, UK
| | - María C Uyarra
- AZTI, Marine Research, Basque Research and Technology Alliance (BRTA), Herrera Kaia, Portualdea S/N, 20110, Pasaia, Spain
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Rathnayake RMUB, Chandrathilake GGT, Jayawardana DT, Tanaka N, Gunathilake BM, Buddhima AVPS. Quantifying spatiotemporal dynamics in the Kolonnawa marsh of Colombo, Sri Lanka. ENVIRONMENTAL MONITORING AND ASSESSMENT 2024; 196:690. [PMID: 38958832 DOI: 10.1007/s10661-024-12808-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/08/2023] [Accepted: 06/11/2024] [Indexed: 07/04/2024]
Abstract
Kolonnawa marsh (KM) is an important wetland ecosystem in Colombo district, Sri Lanka that provides essential ecosystem services, and has undergone significant changes over recent decades due to continuous exploitation and reclamation. The values of wetlands are disregarded by decision-makers, despite the fact that they are crucial for improving the quality of water and offer chances for relaxation and amusement in metropolitan areas. Underestimation of the value of wetlands contributes to their continuing deterioration and inevitable loss. Investigating the changes in wetlands can provide crucial information for decision-making. This study aimed to monitor the spatiotemporal land-cover dynamics of KM with the prospect prediction as reduced total extent of KM gradually with time and marsh area being transformed into terrestrial vegetation with time. The collective images from Google Earth (2000 to 2021) and drone data (2022) were analyzed with the GIS application. Subsequently, 50-m2 grid squares with unique cell IDs are designed to link among land cover maps for spatiotemporal land-cover change analysis. Then, we calculate land cover category: surface water, marsh, and terrestrial vegetation proportions for each map in 50-m2 grid cells. Statistical comparison of the land cover changes in grid square cells shows that each land cover category has significant change with the time. The results showed that the reduction of KM marsh resulting in land cover changes has a positive implication on wetland degradation. Thus, interventions should be made for the restoration and sustainable management of KM.
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Affiliation(s)
- R M U B Rathnayake
- Department of Forestry and Environmental Science, Faculty of Applied Sciences, University of Sri Jayewardenepura, Nugegoda, 10250, CO, Sri Lanka.
| | - G G T Chandrathilake
- Department of Forestry and Environmental Science, Faculty of Applied Sciences, University of Sri Jayewardenepura, Nugegoda, 10250, CO, Sri Lanka
| | - D T Jayawardana
- Department of Forestry and Environmental Science, Faculty of Applied Sciences, University of Sri Jayewardenepura, Nugegoda, 10250, CO, Sri Lanka
- Center for Forestry and Environment, University of Sri Jayewardenepura, Nugegoda, 10250, CO, Sri Lanka
| | - Nobuaki Tanaka
- Graduate School of Agricultural and Life Sciences, The University of Tokyo Hokkaido Forest, The University of Tokyo, Bunkyo City, Tokyo, 113-8654, Japan
| | - B M Gunathilake
- Department of Forestry and Environmental Science, Faculty of Applied Sciences, University of Sri Jayewardenepura, Nugegoda, 10250, CO, Sri Lanka
| | - A V P S Buddhima
- Department of Forestry and Environmental Science, Faculty of Applied Sciences, University of Sri Jayewardenepura, Nugegoda, 10250, CO, Sri Lanka
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Bergamo TF, de Lima RS, Kull T, Ward RD, Sepp K, Villoslada M. From UAV to PlanetScope: Upscaling fractional cover of an invasive species Rosa rugosa. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2023; 336:117693. [PMID: 36913856 DOI: 10.1016/j.jenvman.2023.117693] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/17/2023] [Revised: 02/28/2023] [Accepted: 03/06/2023] [Indexed: 06/18/2023]
Abstract
Invasive plant species pose a direct threat to biodiversity and ecosystem services. Among these, Rosa rugosa has had a severe impact on Baltic coastal ecosystems in recent decades. Accurate mapping and monitoring tools are essential to quantify the location and spatial extent of invasive plant species to support eradication programs. In this paper we combined RGB images obtained using an Unoccupied Aerial Vehicle, with multispectral PlanetScope images to map the extent of R. rugosa at seven locations along the Estonian coastline. We used RGB-based vegetation indices and 3D canopy metrics in combination with a random forest algorithm to map R. rugosa thickets, obtaining high mapping accuracies (Sensitivity = 0.92, specificity = 0.96). We then used the R. rugosa presence/absence maps as a training dataset to predict the fractional cover based on multispectral vegetation indices derived from the PlanetScope constellation and an Extreme Gradient Boosting algorithm (XGBoost). The XGBoost algorithm yielded high fractional cover prediction accuracies (RMSE = 0.11, R2 = 0.70). An in-depth accuracy assessment based on site-specific validations revealed notable differences in accuracy between study sites (highest R2 = 0.74, lowest R2 = 0.03). We attribute these differences to the various stages of R. rugosa invasion and the density of thickets. In conclusion, the combination of RGB UAV images and multispectral PlanetScope images is a cost-effective method to map R. rugosa in highly heterogeneous coastal ecosystems. We propose this approach as a valuable tool to extend the highly local geographical scope of UAV assessments into wider areas and regional evaluations.
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Affiliation(s)
- Thaísa F Bergamo
- Institute of Agriculture and Environmental Sciences, Estonian University of Life Sciences, Kreutzwaldi 5, EE-51006, Tartu, Estonia; Department of Geographical and Historical Studies, University of Eastern Finland, P.O. Box 111, FI-80101, Joensuu, Finland.
| | - Raul Sampaio de Lima
- Institute of Agriculture and Environmental Sciences, Estonian University of Life Sciences, Kreutzwaldi 5, EE-51006, Tartu, Estonia
| | - Tiiu Kull
- Institute of Agriculture and Environmental Sciences, Estonian University of Life Sciences, Kreutzwaldi 5, EE-51006, Tartu, Estonia
| | - Raymond D Ward
- Institute of Agriculture and Environmental Sciences, Estonian University of Life Sciences, Kreutzwaldi 5, EE-51006, Tartu, Estonia; Centre for Aquatic Environments, School of the Environment and Technology, University of Brighton, Cockcroft Building, Moulsecoomb, Brighton, BN2 4GJ, UK
| | - Kalev Sepp
- Institute of Agriculture and Environmental Sciences, Estonian University of Life Sciences, Kreutzwaldi 5, EE-51006, Tartu, Estonia
| | - Miguel Villoslada
- Institute of Agriculture and Environmental Sciences, Estonian University of Life Sciences, Kreutzwaldi 5, EE-51006, Tartu, Estonia; Department of Geographical and Historical Studies, University of Eastern Finland, P.O. Box 111, FI-80101, Joensuu, Finland
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Democratizing macroecology: Integrating unoccupied aerial systems with the National Ecological Observatory Network. Ecosphere 2022. [DOI: 10.1002/ecs2.4206] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Unoccupied Aerial Systems: A Review of Regulatory and Legislative Frameworks in the Caribbean. DRONES 2022. [DOI: 10.3390/drones6070170] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
Unoccupied aerial systems (UAS) have become pervasive for many small-scale and large-scale aerial operations around the world. Their implementation in small island states like those of the Caribbean is particularly useful because they are relatively cheap and versatile. Despite being used for more than a decade in this part of the world, however, many territories in this tropical region still do not have adequate regulatory and/or legislative frameworks to support UAS operations. UAS applications are varied in the Caribbean, ranging from recreational use and coral reef monitoring to public utilities and national security support. In this paper, we present the first collective assessment of existing UAS regulatory and legislative frameworks in the Caribbean region. Data on four factors that are critical to UAS operations was collected and analyzed for the fifteen full-member Caribbean Community (CARICOM) countries. Across the duration of this study, some of the countries assessed had no existing frameworks in place, while one had completely banned UAS operations within its jurisdiction. Others, including Guyana, Trinidad and Tobago, and Jamaica, had comprehensive frameworks that were continuously being updated. The outcome of a more in-depth analysis revealed that the UAS legislative framework for Guyana appeared to be the most robust amongst all CARICOM territories. Finally, some of the challenges of proper UAS regulation observed in the region are presented.
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Cunliffe AM, Anderson K, Boschetti F, Brazier RE, Graham HA, Myers‐Smith IH, Astor T, Boer MM, Calvo LG, Clark PE, Cramer MD, Encinas‐Lara MS, Escarzaga SM, Fernández‐Guisuraga JM, Fisher AG, Gdulová K, Gillespie BM, Griebel A, Hanan NP, Hanggito MS, Haselberger S, Havrilla CA, Heilman P, Ji W, Karl JW, Kirchhoff M, Kraushaar S, Lyons MB, Marzolff I, Mauritz ME, McIntire CD, Metzen D, Méndez‐Barroso LA, Power SC, Prošek J, Sanz‐Ablanedo E, Sauer KJ, Schulze‐Brüninghoff D, Šímová P, Sitch S, Smit JL, Steele CM, Suárez‐Seoane S, Vargas SA, Villarreal M, Visser F, Wachendorf M, Wirnsberger H, Wojcikiewicz R. Global application of an unoccupied aerial vehicle photogrammetry protocol for predicting aboveground biomass in non-forest ecosystems. REMOTE SENSING IN ECOLOGY AND CONSERVATION 2022; 8:57-71. [PMID: 35873085 PMCID: PMC9290598 DOI: 10.1002/rse2.228] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/15/2021] [Revised: 06/01/2021] [Accepted: 06/07/2021] [Indexed: 05/03/2023]
Abstract
Non-forest ecosystems, dominated by shrubs, grasses and herbaceous plants, provide ecosystem services including carbon sequestration and forage for grazing, and are highly sensitive to climatic changes. Yet these ecosystems are poorly represented in remotely sensed biomass products and are undersampled by in situ monitoring. Current global change threats emphasize the need for new tools to capture biomass change in non-forest ecosystems at appropriate scales. Here we developed and deployed a new protocol for photogrammetric height using unoccupied aerial vehicle (UAV) images to test its capability for delivering standardized measurements of biomass across a globally distributed field experiment. We assessed whether canopy height inferred from UAV photogrammetry allows the prediction of aboveground biomass (AGB) across low-stature plant species by conducting 38 photogrammetric surveys over 741 harvested plots to sample 50 species. We found mean canopy height was strongly predictive of AGB across species, with a median adjusted R 2 of 0.87 (ranging from 0.46 to 0.99) and median prediction error from leave-one-out cross-validation of 3.9%. Biomass per-unit-of-height was similar within but different among, plant functional types. We found that photogrammetric reconstructions of canopy height were sensitive to wind speed but not sun elevation during surveys. We demonstrated that our photogrammetric approach produced generalizable measurements across growth forms and environmental settings and yielded accuracies as good as those obtained from in situ approaches. We demonstrate that using a standardized approach for UAV photogrammetry can deliver accurate AGB estimates across a wide range of dynamic and heterogeneous ecosystems. Many academic and land management institutions have the technical capacity to deploy these approaches over extents of 1-10 ha-1. Photogrammetric approaches could provide much-needed information required to calibrate and validate the vegetation models and satellite-derived biomass products that are essential to understand vulnerable and understudied non-forested ecosystems around the globe.
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Object-Based Wetland Vegetation Classification Using Multi-Feature Selection of Unoccupied Aerial Vehicle RGB Imagery. REMOTE SENSING 2021. [DOI: 10.3390/rs13234910] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
Wetland vegetation is an important component of wetland ecosystems and plays a crucial role in the ecological functions of wetland environments. Accurate distribution mapping and dynamic change monitoring of vegetation are essential for wetland conservation and restoration. The development of unoccupied aerial vehicles (UAVs) provides an efficient and economic platform for wetland vegetation classification. In this study, we evaluated the feasibility of RGB imagery obtained from the DJI Mavic Pro for wetland vegetation classification at the species level, with a specific application to Honghu, which is listed as a wetland of international importance. A total of ten object-based image analysis (OBIA) scenarios were designed to assess the contribution of five machine learning algorithms to the classification accuracy, including Bayes, K-nearest neighbor (KNN), support vector machine (SVM), decision tree (DT), and random forest (RF), multi-feature combinations and feature selection implemented by the recursive feature elimination algorithm (RFE). The overall accuracy and kappa coefficient were compared to determine the optimal classification method. The main results are as follows: (1) RF showed the best performance among the five machine learning algorithms, with an overall accuracy of 89.76% and kappa coefficient of 0.88 when using 53 features (including spectral features (RGB bands), height information, vegetation indices, texture features, and geometric features) for wetland vegetation classification. (2) The RF model constructed by only spectral features showed poor classification results, with an overall accuracy of 73.66% and kappa coefficient of 0.70. By adding height information, VIs, texture features, and geometric features to construct the RF model layer by layer, the overall accuracy was improved by 8.78%, 3.41%, 2.93%, and 0.98%, respectively, demonstrating the importance of multi-feature combinations. (3) The contribution of different types of features to the RF model was not equal, and the height information was the most important for wetland vegetation classification, followed by the vegetation indices. (4) The RFE algorithm effectively reduced the number of original features from 53 to 36, generating an optimal feature subset for wetland vegetation classification. The RF based on the feature selection result of RFE (RF-RFE) had the best performance in ten scenarios, and provided an overall accuracy of 90.73%, which was 0.97% higher than the RF without feature selection. The results illustrate that the combination of UAV-based RGB imagery and the OBIA approach provides a straightforward, yet powerful, approach for high-precision wetland vegetation classification at the species level, in spite of limited spectral information. Compared with satellite data or UAVs equipped with other types of sensors, UAVs with RGB cameras are more cost efficient and convenient for wetland vegetation monitoring and mapping.
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Using Historical Archives and Landsat Imagery to Explore Changes in the Mangrove Cover of Peninsular Malaysia between 1853 and 2018. REMOTE SENSING 2021. [DOI: 10.3390/rs13173403] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Archive records such as maps, journals, books, sketches, cadastre and notarial documents have been underutilised in describing past and present changes in ecological systems, such as mangrove forests. Historical records can be invaluable information sources for baseline establishment, to undertake long-term study on mangrove dynamics and enhance the historical land cover and land-use dynamics of a country. In this study, we explore these untapped information reservoirs, used complementarily with remote sensing techniques, to explain the dynamics of the mangrove systems in Peninsular Malaysia. The archives in the United Kingdom, the Netherlands, Malaysia and Singapore were explored and mined for related information on the mangrove systems in Peninsular Malaysia from past centuries. Most historical records found in this study were used to validate the mangrove presence in Peninsular Malaysia since 1853 while two records from 1944 and 1954 were used to quantify the mangrove cover extent. A significant finding of this study was the oldest record found in 1853 that attested to the presence of a mangrove system on the mainland Penang of Peninsular Malaysia which was not identified again as such in records post-1853. Remote sensing data, specifically Landsat images, were used to determine the mangrove extent in Peninsular Malaysia for the years 1988, 1992, 2002, 2012 and 2018. By complementing the historical records with remote sensing information, we were able to validate the mangrove presence in Peninsular Malaysia since 1853 and determine the gain/loss of mangrove systems over the last 74 years. Peninsular Malaysia has lost over 400 km2 of mangrove forests, equivalent to 31% of its original extent between 1944 and 2018. This is a significant loss for Peninsular Malaysia which has less than 1% mangrove cover of its total land area presently.
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Mapping Boreal Forest Spruce Beetle Health Status at the Individual Crown Scale Using Fused Spectral and Structural Data. FORESTS 2021. [DOI: 10.3390/f12091145] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
The frequency and severity of spruce bark beetle outbreaks are increasing in boreal forests leading to widespread tree mortality and fuel conditions promoting extreme wildfire. Detection of beetle infestation is a forest health monitoring (FHM) priority but is hampered by the challenges of detecting early stage (“green”) attack from the air. There is indication that green stage might be detected from vertical gradients of spectral data or from shortwave infrared information distributed within a single crown. To evaluate the efficacy of discriminating “non-infested”, “green”, and “dead” health statuses at the landscape scale in Alaska, USA, this study conducted spectral and structural fusion of data from: (1) Unoccupied aerial vehicle (UAV) multispectral (6 cm) + structure from motion point clouds (~700 pts m−2); and (2) Goddard Lidar Hyperspectral Thermal (G-LiHT) hyperspectral (400 to 1000 nm, 0.5 m) + SWIR-band lidar (~32 pts m−2). We achieved 78% accuracy for all three health statuses using spectral + structural fusion from either UAV or G-LiHT and 97% accuracy for non-infested/dead using G-LiHT. We confirm that UAV 3D spectral (e.g., greenness above versus below median height in crown) and lidar apparent reflectance metrics (e.g., mean reflectance at 99th percentile height in crown), are of high value, perhaps capturing the vertical gradient of needle degradation. In most classification exercises, UAV accuracy was lower than G-LiHT indicating that collecting ultra-high spatial resolution data might be less important than high spectral resolution information. While the value of passive optical spectral information was largely confined to the discrimination of non-infested versus dead crowns, G-LiHT hyperspectral band selection (~400, 675, 755, and 940 nm) could inform future FHM mission planning regarding optimal wavelengths for this task. Interestingly, the selected regions mostly did not align with the band designations for our UAV multispectral data but do correspond to, e.g., Sentinel-2 red edge bands, suggesting a path forward for moderate scale bark beetle detection when paired with suitable structural data.
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Accurate mapping of Brazil nut trees (Bertholletia excelsa) in Amazonian forests using WorldView-3 satellite images and convolutional neural networks. ECOL INFORM 2021. [DOI: 10.1016/j.ecoinf.2021.101302] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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