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Yan C, Li P, Yang M, Li Y, Li J, Zhang H, Liu C. Entropy Analysis of Heart Rate Variability in Different Sleep Stages. ENTROPY 2022; 24:e24030379. [PMID: 35327890 PMCID: PMC8947316 DOI: 10.3390/e24030379] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/16/2021] [Revised: 03/01/2022] [Accepted: 03/05/2022] [Indexed: 01/02/2023]
Abstract
How the complexity or irregularity of heart rate variability (HRV) changes across different sleep stages and the importance of these features in sleep staging are not fully understood. This study aimed to investigate the complexity or irregularity of the RR interval time series in different sleep stages and explore their values in sleep staging. We performed approximate entropy (ApEn), sample entropy (SampEn), fuzzy entropy (FuzzyEn), distribution entropy (DistEn), conditional entropy (CE), and permutation entropy (PermEn) analyses on RR interval time series extracted from epochs that were constructed based on two methods: (1) 270-s epoch length and (2) 300-s epoch length. To test whether adding the entropy measures can improve the accuracy of sleep staging using linear HRV indices, XGBoost was used to examine the abilities to differentiate among: (i) 5 classes [Wake (W), non-rapid-eye-movement (NREM), which can be divide into 3 sub-stages: stage N1, stage N2, and stage N3, and rapid-eye-movement (REM)]; (ii) 4 classes [W, light sleep (combined N1 and N2), deep sleep (N3), and REM]; and (iii) 3 classes: (W, NREM, and REM). SampEn, FuzzyEn, and CE significantly increased from W to N3 and decreased in REM. DistEn increased from W to N1, decreased in N2, and further decreased in N3; it increased in REM. The average accuracy of the three tasks using linear and entropy features were 42.1%, 59.1%, and 60.8%, respectively, based on 270-s epoch length; all were significantly lower than the performance based on 300-s epoch length (i.e., 54.3%, 63.1%, and 67.5%, respectively). Adding entropy measures to the XGBoost model of linear parameters did not significantly improve the classification performance. However, entropy measures, especially PermEn, DistEn, and FuzzyEn, demonstrated greater importance than most of the linear parameters in the XGBoost model.300-s270-s.
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Affiliation(s)
- Chang Yan
- School of Instrument Science and Engineering, Southeast University, Nanjing 210096, China; (M.Y.); (Y.L.); (J.L.)
- Correspondence: (C.Y.); (C.L.)
| | - Peng Li
- Division of Sleep and Circadian Disorders, Brigham and Women’s Hospital, Harvard Medical School, Boston, MA 02115, USA;
| | - Meicheng Yang
- School of Instrument Science and Engineering, Southeast University, Nanjing 210096, China; (M.Y.); (Y.L.); (J.L.)
| | - Yang Li
- School of Instrument Science and Engineering, Southeast University, Nanjing 210096, China; (M.Y.); (Y.L.); (J.L.)
| | - Jianqing Li
- School of Instrument Science and Engineering, Southeast University, Nanjing 210096, China; (M.Y.); (Y.L.); (J.L.)
| | - Hongxing Zhang
- State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences, Beijing Institute of Lifeomics, Beijing 102206, China;
| | - Chengyu Liu
- School of Instrument Science and Engineering, Southeast University, Nanjing 210096, China; (M.Y.); (Y.L.); (J.L.)
- Correspondence: (C.Y.); (C.L.)
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Characterisation of neonatal cardiac dynamics using ordinal partition network. Med Biol Eng Comput 2022; 60:829-842. [PMID: 35119556 DOI: 10.1007/s11517-021-02481-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2021] [Accepted: 11/24/2021] [Indexed: 10/19/2022]
Abstract
The maturation of the autonomic nervous system (ANS) starts in the gestation period and it is completed after birth in a variable time, reaching its peak in adulthood. However, the development of ANS maturation is not entirely understood in newborns. Clinically, the ANS condition is evaluated with monitoring of gestational age, Apgar score, heart rate, and by quantification of heart rate variability using linear methods. Few researchers have addressed this problem from the perspective nonlinear data analysis. This paper proposes a new data-driven methodology using nonlinear time series analysis, based on complex networks, to classify ANS conditions in newborns. We map 74 time series given by RR intervals from premature and full-term newborns to ordinal partition networks and use complexity quantifiers to discriminate the dynamical process present in both conditions. We obtain three complexity quantifiers (permutation, conditional, and global node entropies) using network mappings from forward and reverse directions, and considering different time lags and embedding dimensions. The results indicate that time asymmetry is present in the data of both groups and the complexity quantifiers can differentiate the groups analysed. We show that the conditional and global node entropies are sensitive for detecting subtle differences between the neonates, particularly for small embedding dimensions (m < 7). This study reinforces the assessment of nonlinear techniques for RR interval time series analysis. Graphical Abstract.
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The distribution of information for sEMG signals in the rectal cancer treatment process. Biosystems 2018; 176:13-16. [PMID: 30578825 DOI: 10.1016/j.biosystems.2018.12.004] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2018] [Revised: 12/05/2018] [Accepted: 12/17/2018] [Indexed: 12/28/2022]
Abstract
The electrical activity of external anal sphincter can be registered with surface electromyography. This signals are known to be highly complex and nonlinear. This work aims in characterisation of the information carried in the signals by harvesting the concept of information entropy. We will focus of two classical measures of the complexity. Firstly the Shannon entropy is addressed. It is related to the probability spectrum of the possible states. Secondly the Spectral entropy is described, as a simple frequency-domain analog of the time-domain Shannon characteristics. We discuss the power spectra for separate time scales and present the characteristics which can represent the dynamics of electrical activity of this specific muscle group. We find that the rest and maximum contraction states represent rather different spectral characteristic of entropy, with close-to-normal contraction and negatively skewed rest state.
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Li Y, Li P, Wang X, Karmakar C, Liu C, Liu C. Short-term QT interval variability in patients with coronary artery disease and congestive heart failure: a comparison with healthy control subjects. Med Biol Eng Comput 2018; 57:389-400. [PMID: 30143993 DOI: 10.1007/s11517-018-1870-8] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2017] [Accepted: 07/02/2018] [Indexed: 02/01/2023]
Abstract
This study aimed to test how different QT interval variability (QTV) indices change in patients with coronary artery disease (CAD) and congestive heart failure (CHF). Twenty-nine healthy volunteers, 29 age-matched CAD patients, and 20 age-matched CHF patients were studied. QT time series were derived from 5-min resting lead-II electrocardiogram (ECG). Time domain indices [mean, SD, and QT variability index (QTVI)], frequency-domain indices (LF and HF), and nonlinear indices [sample entropy (SampEn), permutation entropy (PE), and dynamical patterns] were calculated. In order to account for possible influence of heart rate (HR) on QTV, all the calculations except QTVI were repeated on HR-corrected QT time series (QTc) using three correction methods (i.e., Bazett, Fridericia, and Framingham method). Results showed that CHF patients exhibited increased mean, increased SD, increased LF and HF, decreased T-wave amplitude, increased QTVI, and decreased PE, while showed no significant changes in SampEn. Interestingly, CHF patients also showed significantly changed distribution of the dynamical patterns with less monotonously changing patterns while more fluctuated patterns. In CAD group, only QTVI was found significantly increased as compared with healthy controls. Results after HR correction were in common with those before HR correction except for QTc based on Bazett correction. Graphical abstract Fig. The framework of this paper. The arrows show the sequential analysis of the data.
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Affiliation(s)
- Yang Li
- School of Control Science and Engineering, Shandong University, Jinan, People's Republic of China
| | - Peng Li
- School of Control Science and Engineering, Shandong University, Jinan, People's Republic of China
| | - Xinpei Wang
- School of Control Science and Engineering, Shandong University, Jinan, People's Republic of China
| | - Chandan Karmakar
- School of Information Technology, Deakin University, Melbourne, VIC, Australia
| | - Changchun Liu
- School of Control Science and Engineering, Shandong University, Jinan, People's Republic of China.
| | - Chengyu Liu
- School of Instrument Science and Engineering, Southeast University, Nanjing, People's Republic of China
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Wdowczyk J, Makowiec D, Gruchała M, Wejer D, Struzik ZR. Dynamical Landscape of Heart Rhythm in Long-Term Heart Transplant Recipients: A Way to Discern Erratic Rhythms. Front Physiol 2018; 9:274. [PMID: 29686620 PMCID: PMC5900061 DOI: 10.3389/fphys.2018.00274] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2017] [Accepted: 03/08/2018] [Indexed: 12/26/2022] Open
Abstract
It is commonly believed that higher values of heart rate variability (HRV) indices account for better organization of the network of feedback reflexes driving an organism's response to actual bodily needs. In order to evaluate this organization in heart transplant (HTX) recipients, 58 nocturnal Holter signals of 14 HTX patients were analyzed. Their dynamical properties were evaluated by short-term HRV indices and measures grounded on entropy. Estimates grouped according to the patients' clinical progress: free of complications versus with complications, and arranged in order of the length of time since the HTX, lead us to the conclusion that higher HRV is associated with a worse outcome for HTX patients. Moreover, short-term HRV indices that are constant, rather than increasing over time, serve well in the prognosis of the future state of a HTX patient. These findings suggest that increases observed in HRV indices are related to erratic rhythms resulting from remodeling of the cardiac tissue (including heterogeneous innervation) in long-term HTX patients. Therefore, we hypothesize that dynamical landscape markers (entropy and fragmentation measures together with the short-term HRV indices) can serve as a tool in the exploration of the genesis of (non-respiratory sinus) arrhythmia.
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Affiliation(s)
- Joanna Wdowczyk
- First Cardiology Clinic, Medical University of Gdańsk, Gdańsk, Poland
| | - Danuta Makowiec
- Faculty of Mathematics, Physics and Informatics, Institute of Theoretical Physics and Astrophysics, University of Gdańsk, Gdańsk, Poland
| | - Marcin Gruchała
- First Cardiology Clinic, Medical University of Gdańsk, Gdańsk, Poland
| | - Dorota Wejer
- Faculty of Mathematics, Physics and Informatics, Institute of Experimental Physics, University of Gdańsk, Gdańsk, Poland
| | - Zbigniew R Struzik
- Laboratory for Advanced Brain Signal Processing, RIKEN Brain Science Institute, Wako, Japan.,Graduate School of Education, University of Tokyo, Tokyo, Japan
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Makowiec D, Wejer D, Graff B, Struzik ZR. Dynamical Pattern Representation of Cardiovascular Couplings Evoked by Head-up Tilt Test. ENTROPY 2018; 20:e20040235. [PMID: 33265326 PMCID: PMC7512750 DOI: 10.3390/e20040235] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/14/2018] [Revised: 03/23/2018] [Accepted: 03/23/2018] [Indexed: 11/17/2022]
Abstract
Shannon entropy (ShE) is a recognised tool for the quantization of the temporal organization of time series. Transfer entropy (TE) provides insight into the dependence between coupled systems. Here, signals are analysed that were produced by the cardiovascular system when a healthy human underwent a provocation test using the head-up tilt (HUT) protocol. The information provided by ShE and TE is evaluated from two aspects: that of the algorithmic stability and that of the recognised physiology of the cardiovascular response to the HUT test. To address both of these aspects, two types of symbolization of three-element subsequent values of a signal are considered: one, well established in heart rate research, referring to the variability in a signal, and a novel one, revealing primarily the dynamical trends. The interpretation of ShE shows a strong dependence on the method that was used in signal pre-processing. In particular, results obtained from normalized signals turn out to be less conclusive than results obtained from non-normalized signals. Systematic investigations based on surrogate data tests are employed to discriminate between genuine properties—in particular inter-system coupling—and random, incidental fluctuations. These properties appear to determine the occurrence of a high percentage of zero values of TE, which strongly limits the reliability of the couplings measured. Nevertheless, supported by statistical corroboration, we identify distinct timings when: (i) evoking cardiac impact on the vascular system, and (ii) evoking vascular impact on the cardiac system, within both the principal sub-systems of the baroreflex loop.
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Affiliation(s)
- Danuta Makowiec
- Institute of Theoretical Physics and Astrophysics, Faculty of Mathematics, Physics and Informatics, University of Gdańsk, Wita Stwosza 57, 80-308 Gdańsk, Poland
| | - Dorota Wejer
- Institute of Experimental Physics, Faculty of Mathematics, Physics and Informatics, University of Gdańsk, Wita Stwosza 57, 80-308 Gdańsk, Poland
| | - Beata Graff
- Department of Hypertension and Diabetology, Medical University of Gdańsk, M. Skłodowskiej-Curie 3a, 80-210 Gdańsk, Poland
| | - Zbigniew R. Struzik
- Graduate School of Education, University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
- RIKEN, Brain Science Institute, 2-1 Hirosawa, Wako-shi 351-0198, Japan
- Correspondence: or ; Tel.: +81-48-462-1111
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Entropy Analysis of Short-Term Heartbeat Interval Time Series during Regular Walking. ENTROPY 2017. [DOI: 10.3390/e19100568] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Carricarte Naranjo C, Sanchez-Rodriguez LM, Brown Martínez M, Estévez Báez M, Machado García A. Permutation entropy analysis of heart rate variability for the assessment of cardiovascular autonomic neuropathy in type 1 diabetes mellitus. Comput Biol Med 2017; 86:90-97. [DOI: 10.1016/j.compbiomed.2017.05.003] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2016] [Revised: 05/05/2017] [Accepted: 05/06/2017] [Indexed: 01/29/2023]
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McCullough M, Small M, Iu HHC, Stemler T. Multiscale ordinal network analysis of human cardiac dynamics. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2017; 375:rsta.2016.0292. [PMID: 28507237 PMCID: PMC5434082 DOI: 10.1098/rsta.2016.0292] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 10/13/2016] [Indexed: 05/24/2023]
Abstract
In this study, we propose a new information theoretic measure to quantify the complexity of biological systems based on time-series data. We demonstrate the potential of our method using two distinct applications to human cardiac dynamics. Firstly, we show that the method clearly discriminates between segments of electrocardiogram records characterized by normal sinus rhythm, ventricular tachycardia and ventricular fibrillation. Secondly, we investigate the multiscale complexity of cardiac dynamics with respect to age in healthy individuals using interbeat interval time series and compare our findings with a previous study which established a link between age and fractal-like long-range correlations. The method we use is an extension of the symbolic mapping procedure originally proposed for permutation entropy. We build a Markov chain of the dynamics based on order patterns in the time series which we call an ordinal network, and from this model compute an intuitive entropic measure of transitional complexity. A discussion of the model parameter space in terms of traditional time delay embedding provides a theoretical basis for our multiscale approach. As an ancillary discussion, we address the practical issue of node aliasing and how this effects ordinal network models of continuous systems from discrete time sampled data, such as interbeat interval time series.This article is part of the themed issue 'Mathematical methods in medicine: neuroscience, cardiology and pathology'.
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Affiliation(s)
- M McCullough
- School of Mathematics and Statistics, The University of Western Australia, Crawley, Western Australia 6009, Australia
| | - M Small
- School of Mathematics and Statistics, The University of Western Australia, Crawley, Western Australia 6009, Australia
- Complex Data Modelling Group, Faculty of Engineering, Computing and Mathematics, The University of Western Australia, Crawley, Western Australia 6009, Australia
- Mineral Resources, CSIRO, Kensington, Western Australia 6151, Australia
| | - H H C Iu
- Complex Data Modelling Group, Faculty of Engineering, Computing and Mathematics, The University of Western Australia, Crawley, Western Australia 6009, Australia
- School of Electrical, Electronic and Computer Engineering, The University of Western Australia, Crawley, Western Australia 6009, Australia
| | - T Stemler
- School of Mathematics and Statistics, The University of Western Australia, Crawley, Western Australia 6009, Australia
- Complex Data Modelling Group, Faculty of Engineering, Computing and Mathematics, The University of Western Australia, Crawley, Western Australia 6009, Australia
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Multistructure index characterization of heart rate and systolic blood pressure reveals precursory signs of syncope. Sci Rep 2017; 7:419. [PMID: 28341843 PMCID: PMC5428319 DOI: 10.1038/s41598-017-00354-x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2016] [Accepted: 02/14/2017] [Indexed: 11/08/2022] Open
Abstract
Recurrent syncope - abrupt loss of consciousness - can have a serious impact on patients' quality of life, comparable with chronic illnesses. Vasovagal syncope (VVS) is a specific reflex syncope, in which an inappropriate reaction of the autonomic nervous system (ANS) plays a key role in the pathophysiology. In syncope diagnosis, an ideal diagnostic method should positively identify vasovagal sensitive patients, without the need to perform a specialised head-up tilt table (HUTT) test. We apply a novel methodology of multistructure index (MI) statistics for seamlessly evaluating the size spectrum of the asymmetry properties of magnitudes of neural reflexes responsible for maintaining the homeostatic dynamics of autonomic control. Simultaneous evaluation using the MI of the effects on heart rate and blood pressure involved in achieving homeostasis of contrasting properties of the dynamics of slow and fast neural regulation reveals a clear distinction between vasovagal patients and healthy subjects, who are/are not susceptible to spontaneous fainting. Remarkably, a healthy cardiovascular response to the HUTT test is indeed evident prior to the test, making the MI a robust novel indicator, clearly distinguishing the cardiovascular autonomic regulation of healthy people from that of vasovagal patients without the need to perform an actual HUTT test.
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Wejer D, Graff B, Makowiec D, Budrejko S, Struzik ZR. Complexity of cardiovascular rhythms during head-up tilt test by entropy of patterns. Physiol Meas 2017; 38:819-832. [PMID: 28263183 DOI: 10.1088/1361-6579/aa64a8] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
OBJECTIVE The head-up tilt (HUT) test, which provokes transient dynamical alterations in the regulation of cardiovascular system, provides insights into complex organization of this system. Based on signals with heart period intervals (RR-intervals) and/or systolic blood pressure (SBP), differences in the cardiovascular regulation between vasovagal patients (VVS) and the healthy people group (CG) are investigated. APPROACH Short-term relations among signal data represented symbolically by three-beat patterns allow to qualify and quantify the complexity of the cardiovascular regulation by Shannon entropy. Four types of patterns: permutation, ordinal, deterministic and dynamical, are used, and different resolutions of signal values in the the symbolization are applied in order to verify how entropy of patterns depends on a way in which values of signals are preprocessed. MAIN RESULTS At rest, in the physiologically important signal resolution ranges, independently of the type of patterns used in estimates, the complexity of SBP signals in VVS is different from the complexity found in CG. Entropy of VVS is higher than CG what could be interpreted as substantial presence of noisy ingredients in SBP of VVS. After tilting this relation switches. Entropy of CG occurs significantly higher than VVS for SBP signals. In the case of RR-intervals and large resolutions, the complexity after the tilt becomes reduced when compared to the complexity of RR-intervals at rest for both groups. However, in the case of VVS patients this reduction is significantly stronger than in CG. SIGNIFICANCE Our observations about opposite switches in entropy between CG and VVS might support a hypothesis that baroreflex in VVS affects stronger the heart rate because of the inefficient regulation (possibly impaired local vascular tone alternations) of the blood pressure.
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Affiliation(s)
- Dorota Wejer
- University of Gdańsk, Institute of Experimental Physics, 80-308 Gdańsk, ul Wita Stwosza 57, Poland
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