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Foo J, Basanta D, Rockne RC, Strelez C, Shah C, Ghaffarian K, Mumenthaler SM, Mitchell K, Lathia JD, Frankhouser D, Branciamore S, Kuo YH, Marcucci G, Vander Velde R, Marusyk A, Hang S, Hari K, Jolly MK, Hatzikirou H, Poels K, Spilker M, Shtylla B, Robertson-Tessi M, Anderson ARA. Roadmap on plasticity and epigenetics in cancer. Phys Biol 2022; 19. [PMID: 35078159 PMCID: PMC9190291 DOI: 10.1088/1478-3975/ac4ee2] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2021] [Accepted: 01/25/2022] [Indexed: 11/22/2022]
Abstract
The role of plasticity and epigenetics in shaping cancer evolution and response to therapy has taken center stage with recent technological advances including single cell sequencing. This roadmap article is focused on state-of-the-art mathematical and experimental approaches to interrogate plasticity in cancer, and addresses the following themes and questions: is there a formal overarching framework that encompasses both non-genetic plasticity and mutation-driven somatic evolution? How do we measure and model the role of the microenvironment in influencing/controlling non-genetic plasticity? How can we experimentally study non-genetic plasticity? Which mathematical techniques are required or best suited? What are the clinical and practical applications and implications of these concepts?
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Affiliation(s)
- Jasmine Foo
- University of Minnesota System, School of Mathematics, Minneapolis, Minnesota, 55455-2020, UNITED STATES
| | - David Basanta
- Integrated Mathematical Oncology, H Lee Moffitt Cancer Center and Research Center Inc, H Lee Moffitt Cancer Center and Research Institute, 12902 Magnolia Drive, MRC-3 West/IMO, Tampa, Florida 33612USA, Tampa, Florida, 33612-9416, UNITED STATES
| | - Russell C Rockne
- Computational and Quantitative Medicine; Division of Mathematical Oncology, Beckman Research Institute, 1500 E Duarte Rd, Rose Vogel Building (74), Duarte, California, 91010, UNITED STATES
| | - Carly Strelez
- Lawrence J. Ellison Institute , Transformative Medicine, Los Angeles, CA 90064, UNITED STATES
| | - Curran Shah
- Lawrence J. Ellison Institute , Transformative Medicine, Los Angeles, CA 90064, UNITED STATES
| | - Kimya Ghaffarian
- Lawrence J. Ellison Institute , Transformative Medicine, Los Angeles, CA 90064, UNITED STATES
| | - Shannon M Mumenthaler
- Lawrence J. Ellison Institute , Transformative Medicine, Los Angeles, CA 90064, UNITED STATES
| | - Kelly Mitchell
- Department of Cardiovascular & Metabolic Sciences, Cleveland Clinic, Lerner Research Institute, Cleveland, Ohio, 44195-5243, UNITED STATES
| | - Justin D Lathia
- Department of Cardiovascular & Metabolic Sciences, Cleveland Clinic, Lerner Research Institute, Cleveland, Ohio, 44195-5243, UNITED STATES
| | - David Frankhouser
- Computational and Quantitative Medicine; Division of Mathematical Oncology, Beckman Research Institute, 1500 E Duarte Rd, Rose Vogel Building (74), Duarte, California, 91010, UNITED STATES
| | - Sergio Branciamore
- Computational and Quantitative Medicine; Division of Mathematical Oncology, Beckman Research Institute, 1500 E Duarte Rd, Rose Vogel Building (74), Duarte, California, 91010, UNITED STATES
| | - Ya-Huei Kuo
- Hematologic Malignancies Translational Science, City of Hope National Medical Center, Beckman Research Institute, 1500 E Duarte Rd, Rose Vogel Building (74), Duarte, California, 91010, UNITED STATES
| | - Guido Marcucci
- Hematologic Malignancies Translational Science, City of Hope National Medical Center, Beckman Research Institute, 1500 E Duarte Rd, Rose Vogel Building (74), Duarte, California, 91010, UNITED STATES
| | - Robert Vander Velde
- Department of Cancer Physiology, H Lee Moffitt Cancer Center and Research Center Inc, H Lee Moffitt Cancer Center and Research Institute, 12902 Magnolia Drive, MRC-3 West/IMO, Tampa, Florida 33612USA, Tampa, Florida, 33612-9416, UNITED STATES
| | - Andriy Marusyk
- Cancer Physiology, Moffitt Cancer Center, 12902 USF Magnolia Drive, Tampa, Florida, 33612, UNITED STATES
| | - Sui Hang
- Institute for Systems Biology, Systems Biology, WA , WA 98109, UNITED STATES
| | - Kishore Hari
- Indian Institute of Science, 560012 Bangalore, Bangalore, 560012, INDIA
| | - Mohit Kumar Jolly
- Centre for BioSystems Science and Engineering,, Indian Institute of Science, 560012 Bangalore, Bangalore, 560012, INDIA
| | - Haralampos Hatzikirou
- Khalifa University, P.O. Box: 127788, Abu Dhabi, Abu Dhabi, NA, UNITED ARAB EMIRATES
| | - Kamrine Poels
- Early Clinical Development, Pfizer Global Research and Development, Early Clinical Development, Groton, Connecticut, 06340, UNITED STATES
| | - Mary Spilker
- Medicine Design, Pfizer Global Research and Development, Medicine Design, Groton, Connecticut, 06340, UNITED STATES
| | - Blerta Shtylla
- Early Clinical Development, Pfizer Global Research and Development, Early Clinical Development, Groton, Connecticut, 06340, UNITED STATES
| | - Mark Robertson-Tessi
- Integrated Mathematical Oncology Department, Moffitt Cancer Center, 12902 USF Magnolia Drive, Tampa, Florida, 33612, UNITED STATES
| | - Alexander R A Anderson
- Integrated Mathematical Oncology, Moffitt Cancer Center, Co-Director of Integrated Mathematical Oncology, 12902 Magnolia Drive, SRB 4 Rm 24000H, Tampa, Florida 33612, Tampa, 33612, UNITED STATES
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