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Zhang Y, Qu H, Tian Y, Na F, Yan J, Wu Y, Cui X, Li Z, Zhao M. PB-LNet: a model for predicting pathological subtypes of pulmonary nodules on CT images. BMC Cancer 2023; 23:936. [PMID: 37789252 PMCID: PMC10548640 DOI: 10.1186/s12885-023-11364-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2022] [Accepted: 09/04/2023] [Indexed: 10/05/2023] Open
Abstract
OBJECTIVE To investigate the correlation between CT imaging features and pathological subtypes of pulmonary nodules and construct a prediction model using deep learning. METHODS We collected information of patients with pulmonary nodules treated by surgery and the reference standard for diagnosis was post-operative pathology. After using elastic distortion for data augmentation, the CT images were divided into a training set, a validation set and a test set in a ratio of 6:2:2. We used PB-LNet to analyze the nodules in pre-operative CT and predict their pathological subtypes. Accuracy was used as the model evaluation index and Class Activation Map was applied to interpreting the results. Comparative experiments with other models were carried out to achieve the best results. Finally, images from the test set without data augmentation were analyzed to judge the clinical utility. RESULTS Four hundred seventy-seven patients were included and the nodules were divided into six groups: benign lesions, precursor glandular lesions, minimally invasive adenocarcinoma, invasive adenocarcinoma Grade 1, Grade 2 and Grade 3. The accuracy of the test set was 0.84. Class Activation Map confirmed that PB-LNet classified the nodules mainly based on the lungs in CT images, which is in line with the actual situation in clinical practice. In comparative experiments, PB-LNet obtained the highest accuracy. Finally, 96 images from the test set without data augmentation were analyzed and the accuracy was 0.89. CONCLUSIONS In classifying CT images of lung nodules into six categories based on pathological subtypes, PB-LNet demonstrates satisfactory accuracy without the need of delineating nodules, while the results are interpretable. A high level of accuracy was also obtained when validating on real data, therefore demonstrates its usefulness in clinical practice.
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Affiliation(s)
- Yuchong Zhang
- Department of Medical Oncology, the First Hospital of China Medical University, NO.155, North Nanjing Street, Heping District, Shenyang, Liaoning Province, 110001, China
| | - Hui Qu
- College of Medicine and Biological Information Engineering, Northeastern University, NO. 3-11, Wenhua Road, Heping District, Shenyang, 110819, Liaoning Province, China
| | - Yumeng Tian
- Department of Medical Oncology, the First Hospital of China Medical University, NO.155, North Nanjing Street, Heping District, Shenyang, Liaoning Province, 110001, China
| | - Fangjian Na
- Network Information Center, China Medical University, NO.77 Puhe Road, Shenbei New District, Shenyang, Liaoning Province, 110122, China
| | - Jinshan Yan
- Department of Medical Oncology, the First Hospital of China Medical University, NO.155, North Nanjing Street, Heping District, Shenyang, Liaoning Province, 110001, China
| | - Ying Wu
- Phase I Clinical Trails Center, the First Hospital of China Medical University, 210 1st Baita Street, Hunnan Distriction, Shenyang, Liaoning Province, 110101, China
| | - Xiaoyu Cui
- College of Medicine and Biological Information Engineering, Northeastern University, NO. 3-11, Wenhua Road, Heping District, Shenyang, 110819, Liaoning Province, China.
- Key Laboratory of Intelligent Computing in Medical Image, Ministry of Education, Shenyang, China.
| | - Zhi Li
- Department of Medical Oncology, the First Hospital of China Medical University, NO.155, North Nanjing Street, Heping District, Shenyang, Liaoning Province, 110001, China.
| | - Mingfang Zhao
- Department of Medical Oncology, the First Hospital of China Medical University, NO.155, North Nanjing Street, Heping District, Shenyang, Liaoning Province, 110001, China.
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Zhou H, Chen J. An Enterprise Service Demand Classification Method Based on One-Dimensional Convolutional Neural Network with Cross-Entropy Loss and Enterprise Portrait. ENTROPY (BASEL, SWITZERLAND) 2023; 25:1211. [PMID: 37628241 PMCID: PMC10453757 DOI: 10.3390/e25081211] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2023] [Revised: 07/31/2023] [Accepted: 08/10/2023] [Indexed: 08/27/2023]
Abstract
To address the diverse needs of enterprise users and the cold-start issue of recommendation system, this paper proposes a quality-service demand classification method-1D-CNN-CrossEntorpyLoss, based on cross-entropy loss and one-dimensional convolutional neural network (1D-CNN) with the comprehensive enterprise quality portrait labels. The main idea of 1D-CNN-CrossEntorpyLoss is to use cross-entropy to minimize the loss of 1D-CNN model and enhance the performance of the enterprise quality-service demand classification. The transaction data of the enterprise quality-service platform are selected as the data source. Finally, the performance of 1D-CNN-CrossEntorpyLoss is compared with XGBoost, SVM, and logistic regression models. From the experimental results, it can be found that 1D-CNN-CrossEntorpyLoss has the best classification results with an accuracy of 72.44%. In addition, compared to the results without the enterprise-quality portrait, the enterprise-quality portrait improves the accuracy and recall of 1D-CNN-CrossEntorpyLoss model. It is also verified that the enterprise-quality portrait can further improve the classification ability of enterprise quality-service demand, and 1D-CNN-CrossEntorpyLoss is better than other classification methods, which can improve the precision service of the comprehensive quality service platform for MSMEs.
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Affiliation(s)
- Haixia Zhou
- School of Economics & Management, Beijing Information Science & Technology University, Beijing 100192, China;
| | - Jindong Chen
- School of Economics & Management, Beijing Information Science & Technology University, Beijing 100192, China;
- Beijing International Science and Technology Cooperation Base of Intelligent Decision and Big Data Application, Beijing 100192, China
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Jiang J, Li J, Li J, Pei H, Li M, Zou Q, Lv Z. A Machine Learning Method to Identify Umami Peptide Sequences by Using Multiplicative LSTM Embedded Features. Foods 2023; 12:foods12071498. [PMID: 37048319 PMCID: PMC10094688 DOI: 10.3390/foods12071498] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2023] [Revised: 03/24/2023] [Accepted: 03/30/2023] [Indexed: 04/05/2023] Open
Abstract
Umami peptides enhance the umami taste of food and have good food processing properties, nutritional value, and numerous potential applications. Wet testing for the identification of umami peptides is a time-consuming and expensive process. Here, we report the iUmami-DRLF that uses a logistic regression (LR) method solely based on the deep learning pre-trained neural network feature extraction method, unified representation (UniRep based on multiplicative LSTM), for feature extraction from the peptide sequences. The findings demonstrate that deep learning representation learning significantly enhanced the capability of models in identifying umami peptides and predictive precision solely based on peptide sequence information. The newly validated taste sequences were also used to test the iUmami-DRLF and other predictors, and the result indicates that the iUmami-DRLF has better robustness and accuracy and remains valid at higher probability thresholds. The iUmami-DRLF method can aid further studies on enhancing the umami flavor of food for satisfying the need for an umami-flavored diet.
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Affiliation(s)
- Jici Jiang
- College of Biomedical Engineering, Sichuan University, Chengdu 610065, China
| | - Jiayu Li
- College of Life Science, Sichuan University, Chengdu 610065, China
| | - Junxian Li
- College of Biomedical Engineering, Sichuan University, Chengdu 610065, China
| | - Hongdi Pei
- College of Biomedical Engineering, Sichuan University, Chengdu 610065, China
- Wu Yuzhang Honors College, Sichuan University, Chengdu 610065, China
| | - Mingxin Li
- College of Biomedical Engineering, Sichuan University, Chengdu 610065, China
| | - Quan Zou
- Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu 610054, China
- Yangtze Delta Region Institute (Quzhou), University of Electronic Science and Technology of China, Quzhou 324000, China
| | - Zhibin Lv
- College of Biomedical Engineering, Sichuan University, Chengdu 610065, China
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