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Othman Kombo K, Nur Hidayat S, Puspita M, Kusumaatmaja A, Roto R, Nirwati H, Susilowati R, Lutfia Haksari E, Wibowo T, Wandita S, Wahyono, Julia M, Triyana K. A machine learning-based electronic nose for detecting neonatal sepsis: Analysis of volatile organic compound biomarkers in fecal samples. Clin Chim Acta 2024; 565:119974. [PMID: 39326694 DOI: 10.1016/j.cca.2024.119974] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2024] [Revised: 09/17/2024] [Accepted: 09/18/2024] [Indexed: 09/28/2024]
Abstract
BACKGROUND Neonatal sepsis is a global health threat, contributing to high morbidity and mortality rates among newborns. Recognizing the profound impact of neonatal sepsis on long-term health outcomes emphasizes the critical need for timely detection to mitigate its consequences and ensure optimal health for the affected newborns. Currently, various diagnostic approaches have been implemented, but they are limited by their invasiveness, high costs, centralized testing, frequent delays, inaccuracies in results, and the need for sophisticated laboratory equipment. METHODS We introduced a novel, non-invasive, cost-efficient, and easy-to-use technology that can provide rapid results at a point-of-care. The technology utilized a lab-built metal oxide semiconductor-based electronic nose (cNose) combined with volatile organic compound (VOC) biomarkers identified through gas chromatography-mass spectrometry (GC-MS) analysis. The system was evaluated using fecal profiling tests involving a total of 32 samples, including 17 positive and 15 negative sepsis, confirmed by blood culture. To assess the performance in discriminating patients from healthy controls, four machine learning algorithms were implemented. RESULTS Based on the cross-validation results, the MLPNN model provided the best results in distinguishing between neonates with positive and negative sepsis, achieving high-performance results of 90.63 % accuracy, 88.24 % sensitivity, and 93.33 % specificity at a 95 % confidence interval. Specific VOCs associated with neonatal sepsis, such as alcohols, acids, and esters, were successfully identified through GC-MS analysis, further validating the diagnostic capability of the cNose device. CONCLUSION The overall observations show the feasibility of using cNose system as a promising tool for real-time and bedside sepsis detection, potentially improving patient outcomes.
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Affiliation(s)
- Kombo Othman Kombo
- Department of Physics, Faculty of Mathematics and Natural Sciences, Universitas Gadjah Mada, Sekip Utara PO Box BLS 21, Yogyakarta 55281, Indonesia; Department of Natural Sciences, College of Science and Technical Education, Mbeya University of Science and Technology, P.O.Box 131, Mbeya, Tanzania
| | - Shidiq Nur Hidayat
- Department of Physics, Faculty of Mathematics and Natural Sciences, Universitas Gadjah Mada, Sekip Utara PO Box BLS 21, Yogyakarta 55281, Indonesia
| | - Mayumi Puspita
- Department of Physics, Faculty of Mathematics and Natural Sciences, Universitas Gadjah Mada, Sekip Utara PO Box BLS 21, Yogyakarta 55281, Indonesia
| | - Ahmad Kusumaatmaja
- Department of Physics, Faculty of Mathematics and Natural Sciences, Universitas Gadjah Mada, Sekip Utara PO Box BLS 21, Yogyakarta 55281, Indonesia
| | - Roto Roto
- Department of Chemistry, Faculty of Mathematics and Natural Sciences, Universitas Gadjah Mada, Sekip Utara, Yogyakarta 55281, Indonesia
| | - Hera Nirwati
- Department of Microbiology, Faculty of Medicine, Public Health and Nursing, Universitas Gadjah Mada, Jl. Farmako Sekip Utara, Yogyakarta 55281, Indonesia
| | - Rina Susilowati
- Department of Histology and Cell Biology, Faculty of Medicine, Public Health and Nursing, Universitas Gadjah Mada, Jl. Farmako Sekip Utara, Yogyakarta 55281, Indonesia
| | - Ekawaty Lutfia Haksari
- Department of Child Health, Faculty of Medicine, Public Health and Nursing, Universitas Gadjah Mada/Dr. Sardjito Hospital, Yogyakarta 55281, Indonesia
| | - Tunjung Wibowo
- Department of Child Health, Faculty of Medicine, Public Health and Nursing, Universitas Gadjah Mada/Dr. Sardjito Hospital, Yogyakarta 55281, Indonesia
| | - Setya Wandita
- Department of Child Health, Faculty of Medicine, Public Health and Nursing, Universitas Gadjah Mada/Dr. Sardjito Hospital, Yogyakarta 55281, Indonesia
| | - Wahyono
- Department of Computer Science and Electronics, Universitas Gadjah Mada, Sekip Utara BLS 21, 55281 Yogyakarta, Indonesia
| | - Madarina Julia
- Department of Child Health, Faculty of Medicine, Public Health and Nursing, Universitas Gadjah Mada/Dr. Sardjito Hospital, Yogyakarta 55281, Indonesia
| | - Kuwat Triyana
- Department of Physics, Faculty of Mathematics and Natural Sciences, Universitas Gadjah Mada, Sekip Utara PO Box BLS 21, Yogyakarta 55281, Indonesia.
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Rogers HP, Hseu A, Kim J, Silberholz E, Jo S, Dorste A, Jenkins K. Voice as a Biomarker of Pediatric Health: A Scoping Review. CHILDREN (BASEL, SWITZERLAND) 2024; 11:684. [PMID: 38929263 PMCID: PMC11201680 DOI: 10.3390/children11060684] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/23/2024] [Revised: 05/24/2024] [Accepted: 05/29/2024] [Indexed: 06/28/2024]
Abstract
The human voice has the potential to serve as a valuable biomarker for the early detection, diagnosis, and monitoring of pediatric conditions. This scoping review synthesizes the current knowledge on the application of artificial intelligence (AI) in analyzing pediatric voice as a biomarker for health. The included studies featured voice recordings from pediatric populations aged 0-17 years, utilized feature extraction methods, and analyzed pathological biomarkers using AI models. Data from 62 studies were extracted, encompassing study and participant characteristics, recording sources, feature extraction methods, and AI models. Data from 39 models across 35 studies were evaluated for accuracy, sensitivity, and specificity. The review showed a global representation of pediatric voice studies, with a focus on developmental, respiratory, speech, and language conditions. The most frequently studied conditions were autism spectrum disorder, intellectual disabilities, asphyxia, and asthma. Mel-Frequency Cepstral Coefficients were the most utilized feature extraction method, while Support Vector Machines were the predominant AI model. The analysis of pediatric voice using AI demonstrates promise as a non-invasive, cost-effective biomarker for a broad spectrum of pediatric conditions. Further research is necessary to standardize the feature extraction methods and AI models utilized for the evaluation of pediatric voice as a biomarker for health. Standardization has significant potential to enhance the accuracy and applicability of these tools in clinical settings across a variety of conditions and voice recording types. Further development of this field has enormous potential for the creation of innovative diagnostic tools and interventions for pediatric populations globally.
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Affiliation(s)
- Hannah Paige Rogers
- Department of Cardiology, Boston Children’s Hospital, Harvard Medical School, 300 Longwood Avenue, Boston, MA 02115, USA
| | - Anne Hseu
- Department of Otolaryngology, Boston Children’s Hospital, 333 Longwood Ave, Boston, MA 02115, USA
| | - Jung Kim
- Department of Pediatrics, Boston Children’s Hospital, Boston, MA 02115, USA
| | | | - Stacy Jo
- Department of Otolaryngology, Boston Children’s Hospital, 333 Longwood Ave, Boston, MA 02115, USA
| | - Anna Dorste
- Boston Children’s Hospital, 300 Longwood Avenue, Boston, MA 02115, USA
| | - Kathy Jenkins
- Department of Cardiology, Boston Children’s Hospital, Harvard Medical School, 300 Longwood Avenue, Boston, MA 02115, USA
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Khalilzad Z, Tadj C. Use of psychoacoustic spectrum warping, decision template fusion, and neighborhood component analysis in newborn cry diagnostic systems. THE JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA 2024; 155:901-914. [PMID: 38310608 DOI: 10.1121/10.0024618] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2023] [Accepted: 01/10/2024] [Indexed: 02/06/2024]
Abstract
Dealing with newborns' health is a delicate matter since they cannot express needs, and crying does not reflect their condition. Although newborn cries have been studied for various purposes, there is no prior research on distinguishing a certain pathology from other pathologies so far. Here, an unsophisticated framework is proposed for the study of septic newborns amid a collective of other pathologies. The cry was analyzed with music inspired and speech processing inspired features. Furthermore, neighborhood component analysis (NCA) feature selection was employed with two goals: (i) Exploring how the elements of each feature set contributed to classification outcome; (ii) investigating to what extent the feature space could be compacted. The attained results showed success of both experiments introduced in this study, with 88.66% for the decision template fusion (DTF) technique and a consistent enhancement in comparison to all feature sets in terms of accuracy and 86.22% for the NCA feature selection method by drastically downsizing the feature space from 86 elements to only 6 elements. The achieved results showed great potential for identifying a certain pathology from other pathologies that may have similar effects on the cry patterns as well as proving the success of the proposed framework.
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Affiliation(s)
- Zahra Khalilzad
- Department of Electrical Engineering, École de Technologie Supérieur, Université du Québec, Montréal, Québec H3C 1K3, Canada
| | - Chakib Tadj
- Department of Electrical Engineering, École de Technologie Supérieur, Université du Québec, Montréal, Québec H3C 1K3, Canada
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Khalilzad Z, Tadj C. Using CCA-Fused Cepstral Features in a Deep Learning-Based Cry Diagnostic System for Detecting an Ensemble of Pathologies in Newborns. Diagnostics (Basel) 2023; 13:diagnostics13050879. [PMID: 36900023 PMCID: PMC10000938 DOI: 10.3390/diagnostics13050879] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2022] [Revised: 02/14/2023] [Accepted: 02/21/2023] [Indexed: 03/02/2023] Open
Abstract
Crying is one of the means of communication for a newborn. Newborn cry signals convey precious information about the newborn's health condition and their emotions. In this study, cry signals of healthy and pathologic newborns were analyzed for the purpose of developing an automatic, non-invasive, and comprehensive Newborn Cry Diagnostic System (NCDS) that identifies pathologic newborns from healthy infants. For this purpose, Mel-frequency Cepstral Coefficients (MFCC) and Gammatone Frequency Cepstral Coefficients (GFCC) were extracted as features. These feature sets were also combined and fused through Canonical Correlation Analysis (CCA), which provides a novel manipulation of the features that have not yet been explored in the literature on NCDS designs, to the best of our knowledge. All the mentioned feature sets were fed to the Support Vector Machine (SVM) and Long Short-term Memory (LSTM). Furthermore, two Hyperparameter optimization methods, Bayesian and grid search, were examined to enhance the system's performance. The performance of our proposed NCDS was evaluated with two different datasets of inspiratory and expiratory cries. The CCA fusion feature set using the LSTM classifier accomplished the best F-score in the study, with 99.86% for the inspiratory cry dataset. The best F-score regarding the expiratory cry dataset, 99.44%, belonged to the GFCC feature set employing the LSTM classifier. These experiments suggest the high potential and value of using the newborn cry signals in the detection of pathologies. The framework proposed in this study can be implemented as an early diagnostic tool for clinical studies and help in the identification of pathologic newborns.
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Newborn Cry-Based Diagnostic System to Distinguish between Sepsis and Respiratory Distress Syndrome Using Combined Acoustic Features. Diagnostics (Basel) 2022; 12:diagnostics12112802. [PMID: 36428865 PMCID: PMC9689015 DOI: 10.3390/diagnostics12112802] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2022] [Revised: 11/05/2022] [Accepted: 11/11/2022] [Indexed: 11/18/2022] Open
Abstract
Crying is the only means of communication for a newborn baby with its surrounding environment, but it also provides significant information about the newborn's health, emotions, and needs. The cries of newborn babies have long been known as a biomarker for the diagnosis of pathologies. However, to the best of our knowledge, exploring the discrimination of two pathology groups by means of cry signals is unprecedented. Therefore, this study aimed to identify septic newborns with Neonatal Respiratory Distress Syndrome (RDS) by employing the Machine Learning (ML) methods of Multilayer Perceptron (MLP) and Support Vector Machine (SVM). Furthermore, the cry signal was analyzed from the following two different perspectives: 1) the musical perspective by studying the spectral feature set of Harmonic Ratio (HR), and 2) the speech processing perspective using the short-term feature set of Gammatone Frequency Cepstral Coefficients (GFCCs). In order to assess the role of employing features from both short-term and spectral modalities in distinguishing the two pathology groups, they were fused in one feature set named the combined features. The hyperparameters (HPs) of the implemented ML approaches were fine-tuned to fit each experiment. Finally, by normalizing and fusing the features originating from the two modalities, the overall performance of the proposed design was improved across all evaluation measures, achieving accuracies of 92.49% and 95.3% by the MLP and SVM classifiers, respectively. The MLP classifier was outperformed in terms of all evaluation measures presented in this study, except for the Area Under Curve of Receiver Operator Characteristics (AUC-ROC), which signifies the ability of the proposed design in class separation. The achieved results highlighted the role of combining features from different levels and modalities for a more powerful analysis of the cry signals, as well as including a neural network (NN)-based classifier. Consequently, attaining a 95.3% accuracy for the separation of two entangled pathology groups of RDS and sepsis elucidated the promising potential for further studies with larger datasets and more pathology groups.
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