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Salgado L, López-Sánchez CA, Colina A, Baragaño D, Forján R, Gallego JR. Hg and As pollution in the soil-plant system evaluated by combining multispectral UAV-RS, geochemical survey and machine learning. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2023; 333:122066. [PMID: 37343919 DOI: 10.1016/j.envpol.2023.122066] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/14/2023] [Revised: 06/14/2023] [Accepted: 06/15/2023] [Indexed: 06/23/2023]
Abstract
The combination of a low-density geochemical survey, multispectral data obtained with Unmanned Aerial Vehicle-Remote Sensing (UAV-RS), and a machine learning technique was tested in the search for a statistically robust prediction of contaminant distribution in soil and vegetation, for zones with a highly variable pollutant load. To this end, a novel methodology was devised by means of a limited geochemical study of topsoil and vegetation combined with multispectral data obtained by UAV-RS. The methodology was verified in an area affected by Hg and As contamination that typifies abandoned mining-metallurgy sites in recent decades. A broad selection of spectral indices were calculated to evaluate soil-plant system response, and four machine learning techniques (Multiple Linear Regression, Random Forest, Generalized Boosted Models, and Multivariate Adaptive Regression Spline) were tested to obtain robust statistical models. Random Forest (RF) provided the best non-biased models for As and Hg concentration in soil and vegetation, with R2 and rRMSE (%) ranging from 0.501 to 0.630 and from 180.72 to 46.31, respectively, and with acceptable values for RPD and RPIQ statistics. The prediction and mapping of contaminant content and distribution in the study area were well enough adjusted to the geochemical data and revealed superior accuracy for As than Hg, and for vegetation than topsoil. The results were more precise than those obtained in comparable studies that applied satellite or spectrometry data. In conclusion, the methodology presented emerges as a powerful tool for studies addressing soil and vegetation pollution and an alternative approach to classical geochemical studies, which are time-consuming and expensive.
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Affiliation(s)
- L Salgado
- SMartForest Research Group, Department of Biology of Organisms and Systems Biology, University of Oviedo, 33600 Mieres, Spain; Environmental Biogeochemistry & Raw Materials Group and Institute of Natural Resources and Territorial Planning (INDUROT), University of Oviedo, 33600 Mieres, Spain
| | - C A López-Sánchez
- SMartForest Research Group, Department of Biology of Organisms and Systems Biology, University of Oviedo, 33600 Mieres, Spain
| | - A Colina
- Environmental Biogeochemistry & Raw Materials Group and Institute of Natural Resources and Territorial Planning (INDUROT), University of Oviedo, 33600 Mieres, Spain; Department of Geography, Campus del Milán, University of Oviedo, 33011 Oviedo, Spain
| | - D Baragaño
- Environmental Biogeochemistry & Raw Materials Group and Institute of Natural Resources and Territorial Planning (INDUROT), University of Oviedo, 33600 Mieres, Spain; Escuela Politécnica de Ingeniería de Minas y Energía, University of Cantabria, 39316 Torrelavega, Spain
| | - R Forján
- Environmental Biogeochemistry & Raw Materials Group and Institute of Natural Resources and Territorial Planning (INDUROT), University of Oviedo, 33600 Mieres, Spain; Plant Production Area, Department of Biology of Organisms and Systems Biology, University of Oviedo, 33600 Mieres, Spain
| | - J R Gallego
- Environmental Biogeochemistry & Raw Materials Group and Institute of Natural Resources and Territorial Planning (INDUROT), University of Oviedo, 33600 Mieres, Spain.
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Comparison of UAS-Based Structure-from-Motion and LiDAR for Structural Characterization of Short Broadacre Crops. REMOTE SENSING 2021. [DOI: 10.3390/rs13193975] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The use of small unmanned aerial system (UAS)-based structure-from-motion (SfM; photogrammetry) and LiDAR point clouds has been widely discussed in the remote sensing community. Here, we compared multiple aspects of the SfM and the LiDAR point clouds, collected concurrently in five UAS flights experimental fields of a short crop (snap bean), in order to explore how well the SfM approach performs compared with LiDAR for crop phenotyping. The main methods include calculating the cloud-to-mesh distance (C2M) maps between the preprocessed point clouds, as well as computing a multiscale model-to-model cloud comparison (M3C2) distance maps between the derived digital elevation models (DEMs) and crop height models (CHMs). We also evaluated the crop height and the row width from the CHMs and compared them with field measurements for one of the data sets. Both SfM and LiDAR point clouds achieved an average RMSE of ~0.02 m for crop height and an average RMSE of ~0.05 m for row width. The qualitative and quantitative analyses provided proof that the SfM approach is comparable to LiDAR under the same UAS flight settings. However, its altimetric accuracy largely relied on the number and distribution of the ground control points.
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Individual Tree Detection and Qualitative Inventory of a Eucalyptus sp. Stand Using UAV Photogrammetry Data. REMOTE SENSING 2021. [DOI: 10.3390/rs13183655] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Digital aerial photogrammetry (DAP) data acquired by unmanned aerial vehicles (UAV) have been increasingly used for forest inventory and monitoring. In this study, we evaluated the potential of UAV photogrammetry data to detect individual trees, estimate their heights (ht), and monitor the initial silvicultural quality of a 1.5-year-old Eucalyptus sp. stand in northeastern Brazil. DAP estimates were compared with accurate tree locations obtained with real time kinematic (RTK) positioning and direct height measurements obtained in the field. In addition, we assessed the quality of a DAP-UAV digital terrain model (DTM) derived using an alternative ground classification approach and investigated its performance in the retrieval of individual tree attributes. The DTM built for the stand presented an RMSE of 0.099 m relative to the RTK measurements, showing no bias. The normalized 3D point cloud enabled the identification of over 95% of the stand trees and the estimation of their heights with an RMSE of 0.36 m (11%). However, ht was systematically underestimated, with a bias of 0.22 m (6.7%). A linear regression model, was fitted to estimate tree height from a maximum height metric derived from the point cloud reduced the RMSE by 20%. An assessment of uniformity indices calculated from both field and DAP heights showed no statistical difference. The results suggest that products derived from DAP-UAV may be used to generate accurate DTMs in young Eucalyptus sp. stands, detect individual trees, estimate ht, and determine stand uniformity with the same level of accuracy obtained in traditional forest inventories.
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Abstract
Remote sensing techniques based on images acquired from unmanned aerial vehicles (UAVs) could represent an effective tool to speed up the data acquisition process in phenotyping trials and, consequently, to reduce the time and cost of the field work. In this study, we assessed the ability of a UAV equipped with RGB-NIR cameras in highlighting differences in geometrical and spectral canopy characteristics between eight olive cultivars planted at different planting distances in a hedgerow olive orchard. The relationships between measured and estimated canopy height, projected canopy area and canopy volume were linear regardless of the different cultivars and planting distances (RMSE of 0.12 m, 0.44 m2 and 0.68 m3, respectively). A good relationship (R2 = 0.95) was found between the pruning mass material weighted on the ground and its volume estimated by aerial images. NDVI measured in February 2019 was related to fruit yield per tree measured in November 2018, whereas no relationships were observed with the fruit yield measured in November 2019 due to abiotic and biotic stresses that occurred before harvest. These results confirm the reliability of UAV imagery and structure from motion techniques in estimating the olive geometrical canopy characteristics and suggest further potential applications of UAVs in early discrimination of yield efficiency between different cultivars and in estimating the pruning material volume.
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Recent Advances in Unmanned Aerial Vehicles Forest Remote Sensing—A Systematic Review. Part II: Research Applications. FORESTS 2021. [DOI: 10.3390/f12040397] [Citation(s) in RCA: 29] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Abstract
Forest sustainable management aims to maintain the income of woody goods for companies, together with preserving non-productive functions as a benefit for the community. Due to the progress in platforms and sensors and the opening of the dedicated market, unmanned aerial vehicle–remote sensing (UAV–RS) is improving its key role in the forestry sector as a tool for sustainable management. The use of UAV (Unmanned Aerial Vehicle) in precision forestry has exponentially increased in recent years, as demonstrated by more than 600 references published from 2018 until mid-2020 that were found in the Web of Science database by searching for “UAV” + “forest”. This result is even more surprising when compared with similar research for “UAV” + “agriculture”, from which emerge about 470 references. This shows how UAV–RS research forestry is gaining increasing popularity. In Part II of this review, analyzing the main findings of the reviewed papers (227), numerous strengths emerge concerning research technical issues. UAV–RS is fully applicated for obtaining accurate information from practical parameters (height, diameter at breast height (DBH), and biomass). Research effectiveness and soundness demonstrate that UAV–RS is now ready to be applied in a real management context. Some critical issues and barriers in transferring research products are also evident, namely, (1) hyperspectral sensors are poorly used, and their novel applications should be based on the capability of acquiring tree spectral signature especially for pest and diseases detection, (2) automatic processes for image analysis are poorly flexible or based on proprietary software at the expense of flexible and open-source tools that can foster researcher activities and support technology transfer among all forestry stakeholders, and (3) a clear lack exist in sensors and platforms interoperability for large-scale applications and for enabling data interoperability.
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Recent Advances in Unmanned Aerial Vehicle Forest Remote Sensing—A Systematic Review. Part I: A General Framework. FORESTS 2021. [DOI: 10.3390/f12030327] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
Natural, semi-natural, and planted forests are a key asset worldwide, providing a broad range of positive externalities. For sustainable forest planning and management, remote sensing (RS) platforms are rapidly going mainstream. In a framework where scientific production is growing exponentially, a systematic analysis of unmanned aerial vehicle (UAV)-based forestry research papers is of paramount importance to understand trends, overlaps and gaps. The present review is organized into two parts (Part I and Part II). Part II inspects specific technical issues regarding the application of UAV-RS in forestry, together with the pros and cons of different UAV solutions and activities where additional effort is needed, such as the technology transfer. Part I systematically analyzes and discusses general aspects of applying UAV in natural, semi-natural and artificial forestry ecosystems in the recent peer-reviewed literature (2018–mid-2020). The specific goals are threefold: (i) create a carefully selected bibliographic dataset that other researchers can draw on for their scientific works; (ii) analyze general and recent trends in RS forest monitoring (iii) reveal gaps in the general research framework where an additional activity is needed. Through double-step filtering of research items found in the Web of Science search engine, the study gathers and analyzes a comprehensive dataset (226 articles). Papers have been categorized into six main topics, and the relevant information has been subsequently extracted. The strong points emerging from this study concern the wide range of topics in the forestry sector and in particular the retrieval of tree inventory parameters often through Digital Aerial Photogrammetry (DAP), RGB sensors, and machine learning techniques. Nevertheless, challenges still exist regarding the promotion of UAV-RS in specific parts of the world, mostly in the tropical and equatorial forests. Much additional research is required for the full exploitation of hyperspectral sensors and for planning long-term monitoring.
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An Automatic UAV Based Segmentation Approach for Pruning Biomass Estimation in Irregularly Spaced Chestnut Orchards. FORESTS 2020. [DOI: 10.3390/f11030308] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
The agricultural and forestry sector is constantly evolving, also through the increased use of precision technologies including Remote Sensing (RS). Remotely biomass estimation (WaSfM) in wood production forests is already debated in the literature, but there is a lack of knowledge in quantifying pruning residues from canopy management. The aim of the present study was to verify the reliability of RS techniques for the estimation of pruning biomass through differences in the volume of canopy trees and to evaluate the performance of an unsupervised segmentation methodology as a feasible tool for the analysis of large areas. Remote sensed data were acquired on four uneven-aged and irregularly spaced chestnut orchards in Central Italy by an Unmanned Aerial Vehicle (UAV) equipped with a multispectral camera. Chestnut geometric features were extracted using both supervised and unsupervised crown segmentation and then applying a double filtering process based on Canopy Height Model (CHM) and vegetation index threshold. The results show that UAV monitoring provides good performance in detecting biomass reduction after pruning, despite some differences between the trees’ geometric features. The proposed unsupervised methodology for tree detection and vegetation cover evaluation purposes showed good performance, with a low undetected tree percentage value (1.7%). Comparing crown projected volume reduction extracted by means of supervised and unsupervised approach, R2 ranged from 0.76 to 0.95 among all the sites. Finally, the validation step was assessed by evaluating correlations between measured and estimated pruning wood biomass (Wpw) for single and grouped sites (0.53 < R2 < 0.83). The method described in this work could provide effective strategic support for chestnut orchard management in line with a precision agriculture approach. In the context of the Circular Economy, a fast and cost-effective tool able to estimate the amounts of wastes available as by-products such as chestnut pruning residues can be included in an alternative and virtuous supply chain.
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Metrics of Growth Habit Derived from the 3D Tree Point Cloud Used for Species Determination—A New Approach in Botanical Taxonomy Tested on Dragon Tree Group Example. FORESTS 2020. [DOI: 10.3390/f11030272] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Detailed, three-dimensional modeling of trees is a new approach in botanical taxonomy. Representations of individual trees are a prerequisite for accurate assessments of tree growth and morphological metronomy. This study tests the abilities of 3D modeling of trees to determine the various metrics of growth habit and compare morphological differences. The study included four species of the genus Dracaena: D. draco, D. cinnabari, D. ombet, and D. serrulata. Forty-nine 3D tree point clouds were created, and their morphological metrics were derived and compared. Our results indicate the possible application of 3D tree point clouds to dendrological taxonomy. Basic metrics of growth habit and coefficients derived from the 3D point clouds developed in the present study enable the statistical evaluation of differences among dragon tree species.
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