1
|
Kiouvrekis Y, Vasileiou NGC, Katsarou EI, Lianou DT, Michael CK, Zikas S, Katsafadou AI, Bourganou MV, Liagka DV, Chatzopoulos DC, Fthenakis GC. The Use of Machine Learning to Predict Prevalence of Subclinical Mastitis in Dairy Sheep Farms. Animals (Basel) 2024; 14:2295. [PMID: 39199829 PMCID: PMC11350869 DOI: 10.3390/ani14162295] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2024] [Revised: 08/02/2024] [Accepted: 08/05/2024] [Indexed: 09/01/2024] Open
Abstract
The objective of the study was to develop a computational model with which predictions regarding the level of prevalence of mastitis in dairy sheep farms could be performed. Data for the construction of the model were obtained from a large Greece-wide field study with 111 farms. Unsupervised learning methodology was applied for clustering data into two clusters based on 18 variables (17 independent variables related to health management practices applied in farms, climatological data at the locations of the farms, and the level of prevalence of subclinical mastitis as the target value). The K-means tool showed the highest significance for the classification of farms into two clusters for the construction of the computational model: median (interquartile range) prevalence of subclinical mastitis among farms was 20.0% (interquartile range: 15.8%) and 30.0% (16.0%) (p = 0.002). Supervised learning tools were subsequently used to predict the level of prevalence of the infection: decision trees, k-NN, neural networks, and Support vector machines. For each of these, combinations of hyperparameters were employed; 83 models were produced, and 4150 assessments were made in total. A computational model obtained by means of Support vector machines (kernel: 'linear', regularization parameter C = 3) was selected. Thereafter, the model was assessed through the results of the prevalence of subclinical mastitis in 373 records from sheep flocks unrelated to the ones employed for the selection of the model; the model was used for evaluation of the correct classification of the data in each of 373 sets, each of which included a test (prediction) subset with one record that referred to the farm under assessment. The median prevalence of the infection in farms classified by the model in each of the two categories was 10.4% (5.5%) and 36.3% (9.7%) (p < 0.0001). The overall accuracy of the model for the results presented by the K-means tool was 94.1%; for the estimation of the level of prevalence (<25.0%/≥25.0%) in the farms, it was 96.3%. The findings of this study indicate that machine learning algorithms can be usefully employed in predicting the level of subclinical mastitis in dairy sheep farms. This can facilitate setting up appropriate health management measures for interventions in the farms.
Collapse
Affiliation(s)
- Yiannis Kiouvrekis
- Faculty of Public and One Health, University of Thessaly, 43100 Karditsa, Greece (A.I.K.)
- School of Business, University of Nicosia, Nicosia 2417, Cyprus
| | | | | | - Daphne T. Lianou
- Veterinary Faculty, University of Thessaly, 43100 Karditsa, Greece
| | | | - Sotiris Zikas
- Faculty of Public and One Health, University of Thessaly, 43100 Karditsa, Greece (A.I.K.)
| | - Angeliki I. Katsafadou
- Faculty of Public and One Health, University of Thessaly, 43100 Karditsa, Greece (A.I.K.)
| | - Maria V. Bourganou
- Faculty of Public and One Health, University of Thessaly, 43100 Karditsa, Greece (A.I.K.)
| | - Dimitra V. Liagka
- Faculty of Animal Science, University of Thessaly, 41110 Larissa, Greece
| | | | | |
Collapse
|
2
|
Smistad M, Inglingstad RAE, Skeie S. Seasonal dynamics of bulk milk somatic cell count in grazing Norwegian dairy goats. JDS COMMUNICATIONS 2024; 5:205-209. [PMID: 38646570 PMCID: PMC11026911 DOI: 10.3168/jdsc.2023-0457] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/15/2023] [Accepted: 11/02/2023] [Indexed: 04/23/2024]
Abstract
Somatic cell count (SCC) is a widely used indicator of milk quality in the dairy industry. It is a relatively good indicator of udder health in dairy cows, but strongly confounded by non-infection factors, including season, in dairy goats. This study's objectives were to estimate the variation in SCC explained by season and stage of lactation. We also investigated associations between SCC and other milk quality parameters routinely measured, including total bacterial count, fat, protein, and lactose content, in different seasons and stages of lactation. In this observational study, we included results from the routine analyses of bulk milk samples (n = 5,180) collected every third day in 88 Norwegian goat herds through one year. Herd information was collected via a questionnaire and from the dairy herd recording system. The herds had a notable increase in bulk SCC associated with the pasture season. The median bulk SCC was 470,000 cells/mL in deliveries from the indoor spring period and 1,100,000 cells/mL in the pasture season. During the indoor fall season, when most goat herds are in late lactation, the median SCC was 940,000 cells/mL. The combined effect of the season and herd stage of lactation explained 53.5% of the variation in bulk milk SCC. Fat and protein contents varied significantly with season and stage of lactation, and the association with SCC was non-significant for fat content and explained less than 3% of the variation in protein content. Lactose content was associated with SCC, stage of lactation, and season. Total bacterial count was associated with SCC and the indoor seasons. Determination of normal seasonal variation of goat bulk milk SCC is necessary to establish thresholds for defining milk as abnormal and unacceptable for further processing and improving the usefulness of SCC as a tool for milk quality improvement in dairy goats. The results suggest that SCC thresholds for taking action to improve the milk quality should be adjusted for season and stage of lactation.
Collapse
Affiliation(s)
- Marit Smistad
- TINE SA, R&D Department, Farm Advisory Services, Chr. Magnus Falsens vei 18, 1432 Ås, Norway
| | | | - Siv Skeie
- Faculty of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences, N-1432 Ås, Norway
| |
Collapse
|
3
|
Katsarou EI, Reid N, Lianou DT, Fthenakis GC. Stress related to wild canid predators near dairy sheep farms associated with increased somatic cell counts in bulk-tank milk. Sci Rep 2024; 14:3252. [PMID: 38331991 PMCID: PMC10853181 DOI: 10.1038/s41598-024-53887-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2023] [Accepted: 02/06/2024] [Indexed: 02/10/2024] Open
Abstract
We investigated the association between wild canid predators reported near sheep farms throughout Greece and somatic cell counts in bulk-tank milk as a reflection of milk quality. The study included 325 dairy sheep flocks, where bulk-tank milk somatic cell counts and total bacterial counts were measured and staphylococci were isolated. Farms were divided into three groups: Cohort A (farms with no reports of wild canid predators nearby), B (farms with canid predators (golden jackal and grey wolf) nearby yet with no experience of livestock losses to predation) and C (farms with canid predators nearby and livestock losses to predation). Somatic cell counts in bulk-tank milk of Cohort C farms were significantly higher, + 43% and + 29%, compared to those for Cohorts A and B, respectively: 0.617 × 106 cells mL-1 versus 0.433 × 106 or 0.477 × 106 cells mL-1, respectively. The presence of wild canid predators near sheep farms was associated with lower quality milk potentially indicative of stress consistent with the potential effects of a landscape of fear. Increasing biosecurity measures at livestock farms, e.g., fencing, and presence of livestock guard dogs could minimise predation risk, whilst also improving livestock welfare by reducing predator-associated stress.
Collapse
Affiliation(s)
- Eleni I Katsarou
- Veterinary Faculty, University of Thessaly, 43100, Karditsa, Greece
| | - Neil Reid
- Institute for Global Food Security (IGFS), School of Biological Sciences, Queen's University Belfast, Belfast, BT9 5DL, UK
| | - Daphne T Lianou
- Veterinary Faculty, University of Thessaly, 43100, Karditsa, Greece
| | | |
Collapse
|
4
|
Lianou DT, Michael CK, Fthenakis GC. Data on Mapping 444 Dairy Small Ruminant Farms during a Countrywide Investigation Performed in Greece. Animals (Basel) 2023; 13:2044. [PMID: 37370554 DOI: 10.3390/ani13122044] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2023] [Revised: 06/06/2023] [Accepted: 06/19/2023] [Indexed: 06/29/2023] Open
Abstract
The small ruminant industry is the most important branch of Greek agriculture. Nevertheless, despite the importance of small ruminant farming for Greece, no detailed mapping of the respective farms has been undertaken and published. The present work refers to mapping the dairy sheep and goat industry in Greece through an extensive, countrywide cross-sectional study, in which information was obtained from 325 sheep and 119 goat farms. The objectives were the collection, the classification and the presentation of data obtained from all these farms through interviews, using a questionnaire and through examination of samples collected during the visits. All the farms enrolled in the study were visited by the investigators. Initially, information was obtained by means of a detailed, structured questionnaire with 442 questions. Moreover, samples of milk were collected from the bulk-tank of each farm and faecal samples were collected from female animals in each farm. The milk samples were processed for cytological and microbiological examination. Staphylococcus spp. and Listeria spp. isolates were recovered and identified at a species level; furthermore, a full antibiotic sensitivity pattern assessment was conducted. Faecal samples were processed by standard parasitological tests for the identification of protozoan, trematode, cestode and gastrointestinal and respiratory nematode parasites. The paper presents the cumulative findings of the study, i.e., the answers to the questions during the interviews and the results of the laboratory examinations performed in the samples; the findings are presented separately for sheep and goat farms. The findings can be used as baseline measurements; individual farms and cohorts of farms can be compared against the current results to draw conclusions against the countrywide situation. Moreover, the current results can be used as reference points for the future, in order to assess changes that might have occurred in the meantime. The study also described the differences between farms with sheep or goats; in total, differences in 137 parameters were identified. Some of these can be attributed to the different management systems practiced; sheep flocks are managed mostly under the intensive or semi-intensive system, whilst goat herds are managed mostly under the semi-extensive or extensive system. These findings can be useful in the health management of small ruminants, in providing evidence-based support and within the scope of precise livestock medicine and health management.
Collapse
Affiliation(s)
- Daphne T Lianou
- Veterinary Faculty, University of Thessaly, 43100 Karditsa, Greece
| | | | | |
Collapse
|
5
|
Vasileiou NGC, Fthenakis GC, Mavrogianni VS. Comparison of the Efficacy of Intramammary or Injectable Antibiotic Administration against Staphylococcal Mastitis in Ewes. Pathogens 2022; 11:pathogens11101164. [PMID: 36297221 PMCID: PMC9607280 DOI: 10.3390/pathogens11101164] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2022] [Revised: 10/04/2022] [Accepted: 10/07/2022] [Indexed: 11/05/2022] Open
Abstract
The objectives of the work were (a) to compare the efficacy of two routes for antibiotic administration in the treatment of mastitis in ewes and (b) to assess the potential importance of the timing of the initiation of the therapeutic regime on the outcome of the treatment. The ewes were allocated at random into three equal groups; intramammary inoculation with a Staphylococcus simulans isolate was performed, and clinical mastitis developed. The ewes in groups T1 (n = 6) and T2 (n = 6) were treated by the intramammary administration of ampicillin and dicloxacillin (two administrations with a 12-h interval). The ewes in group T3 (n = 6) were treated by the intramuscular injection of ampicillin and dicloxacillin (0.75 mL per 10 kg bodyweight, three injections with a 24-h interval). In the ewes in groups T1 and T3, treatment started immediately when the clinical signs of mastitis were first detected during the periodic examination of the ewes; in the ewes in group T2, treatment started 24 h after the clinical signs of mastitis were first detected. The animals were monitored clinically; mammary secretion samples were collected for bacteriological and cytological examinations. The median duration of the clinical signs was 4.75, 7.13, and 4.75 d for T1, T2, and T3; significant differences in clinical severity between the groups were seen until the 7th day post-treatment. The median duration of bacterial recovery was 3.25, 8.00, and 8.00 d for T1, T2, and T3; significant differences in the frequency of bacterial recovery between the groups were seen until (64.1%, 94.9%, and 96.2% of the samples) and after (2.9%, 16.7%, and 11.8%) the 7th day post-treatment. The median period required for the complete cure (clinical, bacteriological, and cytological) was shorter in the T1 than in the T2 and T3 ewe groups: 20.0, 32.0, and 24.5 d, respectively. The findings cover a gap in the available literature regarding the treatment of clinical mastitis in ewes. Early treatment resulted in the improved cure of the infection. The comparison of the intramammary and injectable routes for antibiotic administration indicated some benefit for the former, primarily in the post-treatment somatic cell counts.
Collapse
Affiliation(s)
| | | | - Vasia S. Mavrogianni
- Veterinary Faculty, University of Thessaly, 43100 Karditsa, Greece
- Correspondence:
| |
Collapse
|
6
|
Administration of Vaccines in Dairy Sheep and Goat Farms:Patterns of Vaccination, Associations with Health and Production Parameters, Predictors. Vaccines (Basel) 2022; 10:vaccines10091372. [PMID: 36146451 PMCID: PMC9502793 DOI: 10.3390/vaccines10091372] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2022] [Revised: 08/12/2022] [Accepted: 08/20/2022] [Indexed: 11/16/2022] Open
Abstract
This paper reports findings regarding patterns of vaccine usage in sheep and goat farms, in 325 sheep flocks and 119 goat herds throughout Greece. The objectives of the study were (a) to describe the patterns of vaccine administration in small ruminant farms and (b) to highlight factors that were associated with vaccinations in the farms. Vaccination against brucellosis was performed in all farms into the study. Among optional vaccinations, anti-clostridial vaccination was most frequently performed (in 97.8% of farms), followed by vaccination against contagious agalactia, (56.5% of farms), pneumonia (41.2%), chlamydial abortion (38.1%), staphylococcal mastitis (36.0%), and paratuberculosis (9.5%). Vaccinations against pneumonia and staphylococcal mastitis were performed more frequently in sheep flocks, whilst vaccinations against paratuberculosis were performed more frequently in goat herds. On average, 2.8 and 2.7 optional vaccinations (i.e., additionally to vaccination against brucellosis) were performed in sheep and goat farms, respectively. The increased number of vaccines administered was associated with a higher average milk production in the respective farms. There was an association of vaccination against staphylococcal mastitis with a reduced recovery of staphylococci from the bulk-tank raw milk. In multivariable analyses, significant associations of the administration of the various optional vaccines were seen with 15 variables, 11 related to health management practices and 4 related to the demographic characteristics of farmers; the collaboration with a veterinarian, the daily number of milking sessions, and the period spent daily by the farmer at the farm premises were each associated with the administration of vaccines against three infections.
Collapse
|
7
|
Lianou DT, Petinaki E, Michael CK, Skoulakis A, Cripps PJ, Katsarou EI, Papadopoulos E, Billinis C, Katsafadou AI, Mavrogianni VS, Caroprese M, Fthenakis GC. Zoonotic Problems Reported by Sheep and Goat Farmers and Factors Potentially Contributing to the Occurrence of Brucellosis among Them. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2022; 19:10372. [PMID: 36012008 PMCID: PMC9408422 DOI: 10.3390/ijerph191610372] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/28/2022] [Revised: 08/01/2022] [Accepted: 08/18/2022] [Indexed: 06/15/2023]
Abstract
The study aimed to investigate the occurrence of zoonotic problems reported by dairy small ruminant farmers in Greece and to study potential associations with socio-demographic characteristics of the farmers and management practices applied in the farms. A countrywide investigation was performed in 325 sheep and 119 goat farms in the 13 administrative regions of Greece. The selected farms were visited and interviews were conducted with respective farmers. The occurrence of zoonotic problems in the farmers was recorded. A total biosecurity score (0−6) was devised, based on biosecurity practices followed in farms. Sixty-seven farmers (15.10%, 95% confidence intervals (CI): 12.1−18.7%) reported experiencing a zoonotic problem. Most of the farmers (n = 57) (85.1%, 95% CI: 74.76−91.7%, of those with a zoonotic problem) (12.8%, 95% CI: 10.0−16.3%, of all) reported that the zoonotic problem had been brucellosis. Odds ratio for the occurrence of brucellosis in goat farmers was 1.879 (95% CI: 1.051−3.359) compared to the occurrence of the infection in sheep farmers (p = 0.033). For the outcome ‘occurrence of brucellosis’ in sheep farmers, the application of hand-milking, the availability of a separate lambing area and the presence of cats in the farm emerged as significant (p < 0.01); for the same outcome in goat farmers, only the availability of a separate kidding area emerged as significant (p = 0.001). The mean biosecurity score in farms in the continental area of the country was significantly higher than in the islands: 3.45 ± 0.05 versus 2.76 ± 0.28, respectively (p = 0.006), whilst there was also a significantly higher score in farms, where the farmer reported occurrence of brucellosis: 3.68 ± 0.15 versus 3.34 ± 0.06 in farms, where the farmer did not report such an incident (p = 0.042). In farms, where the above predictors prevail, farmers should be warned of an increased potential risk for human infection and biosecurity measures should be implemented and tightened.
Collapse
Affiliation(s)
- Daphne T. Lianou
- Veterinary Faculty, University of Thessaly, 43100 Karditsa, Greece
| | - Efthymia Petinaki
- Department of Microbiology, University Hospital of Larissa, 41110 Larissa, Greece
| | | | - Anargyros Skoulakis
- Department of Microbiology, University Hospital of Larissa, 41110 Larissa, Greece
| | - Peter J. Cripps
- Veterinary Faculty, University of Thessaly, 43100 Karditsa, Greece
| | | | - Elias Papadopoulos
- Laboratory of Parasitology and Parasitic Diseases, School of Veterinary Medicine, Faculty of Health Sciences, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece
| | - Charalambos Billinis
- Veterinary Faculty, University of Thessaly, 43100 Karditsa, Greece
- Faculty of Public and One Health, University of Thessaly, 43100 Karditsa, Greece
| | | | | | - Mariangela Caroprese
- Department of Agriculture, Food, Natural Resources and Engineering (DAFNE), University of Foggia, 71122 Foggia, Italy
| | | |
Collapse
|
8
|
Lianou DT, Skoulakis A, Michael CK, Katsarou EI, Chatzopoulos DC, Solomakos N, Tsilipounidaki K, Florou Z, Cripps PJ, Katsafadou AI, Vasileiou NGC, Dimoveli KS, Bourganou MV, Liagka DV, Papatsiros VG, Kontou PI, Mavrogianni VS, Caroprese M, Petinaki E, Fthenakis GC. Isolation of Listeria ivanovii from Bulk-Tank Milk of Sheep and Goat Farms-From Clinical Work to Bioinformatics Studies: Prevalence, Association with Milk Quality, Antibiotic Susceptibility, Predictors, Whole Genome Sequence and Phylogenetic Relationships. BIOLOGY 2022; 11:biology11060871. [PMID: 35741392 PMCID: PMC9220212 DOI: 10.3390/biology11060871] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/02/2022] [Revised: 06/04/2022] [Accepted: 06/05/2022] [Indexed: 02/03/2023]
Abstract
Simple Summary An extensive countrywide study in Greece revealed that isolation of the zoonotic pathogens Listeria monocytogenes and Listeria ivanovii from the milk produced in sheep or goat farms was infrequent: 1.2% of farms sampled. The presence of pigs on the farms, low average relative humidity in the environment and a high number of animals on the farms were found to be associated with the isolations. Detailed assessment of the L. ivanovii strains, for which there is a paucity of information worldwide, revealed that the isolated strains belonged to the L. ivanovii subsp. ivanovii branch. All strains of the branch appeared to be very similar, with the distance between them being small, which suggests that global spread of this clonal branch is a recent evolutionary event or that the branch is characterized by a slow evolutionary rate. Abstract A cross-sectional study was performed in 325 sheep and 119 goat dairy farms in Greece. Samples of bulk-tank milk were examined by standard microbiological techniques for Listeria spp. Listeria monocytogenes was isolated from one (0.3%) and Listeria ivanovii from three (0.9%) sheep farms. No associations between the isolation of L. monocytogenes or L. ivanovii and milk quality were found. No resistance to antibiotics was identified. Three variables emerged as significant predictors of isolation of the organism: the presence of pigs, low average relative humidity and a high number of ewes on the farm. The three L. ivanovii isolates were assessed in silico for identification of plasmids, prophages, antibiotic resistance genes, virulence factors, CRISPRs and CAS genes. Phylogenetic analysis using the core genome revealed that the three strains belonged to the L. ivanovii subsp. ivanovii branch and were especially close to the PAM 55 strain. All strains of the branch appeared to be very similar, with the distance between them being small.
Collapse
Affiliation(s)
- Daphne T. Lianou
- Veterinary Faculty, University of Thessaly, 43100 Karditsa, Greece; (D.T.L.); (C.K.M.); (E.I.K.); (N.S.); (P.J.C.); (K.S.D.); (V.G.P.); (V.S.M.)
| | | | - Charalambia K. Michael
- Veterinary Faculty, University of Thessaly, 43100 Karditsa, Greece; (D.T.L.); (C.K.M.); (E.I.K.); (N.S.); (P.J.C.); (K.S.D.); (V.G.P.); (V.S.M.)
| | - Eleni I. Katsarou
- Veterinary Faculty, University of Thessaly, 43100 Karditsa, Greece; (D.T.L.); (C.K.M.); (E.I.K.); (N.S.); (P.J.C.); (K.S.D.); (V.G.P.); (V.S.M.)
| | - Dimitris C. Chatzopoulos
- Faculty of Public and One Health, University of Thessaly, 43100 Karditsa, Greece; (D.C.C.); (A.I.K.); (M.V.B.)
| | - Nikolaos Solomakos
- Veterinary Faculty, University of Thessaly, 43100 Karditsa, Greece; (D.T.L.); (C.K.M.); (E.I.K.); (N.S.); (P.J.C.); (K.S.D.); (V.G.P.); (V.S.M.)
| | | | - Zoe Florou
- University Hospital of Larissa, 41110 Larissa, Greece; (K.T.); (Z.F.); (E.P.)
| | - Peter J. Cripps
- Veterinary Faculty, University of Thessaly, 43100 Karditsa, Greece; (D.T.L.); (C.K.M.); (E.I.K.); (N.S.); (P.J.C.); (K.S.D.); (V.G.P.); (V.S.M.)
| | - Angeliki I. Katsafadou
- Faculty of Public and One Health, University of Thessaly, 43100 Karditsa, Greece; (D.C.C.); (A.I.K.); (M.V.B.)
| | - Natalia G. C. Vasileiou
- Faculty of Animal Science, University of Thessaly, 41110 Larissa, Greece; (N.G.C.V.); (D.V.L.)
| | - Konstantina S. Dimoveli
- Veterinary Faculty, University of Thessaly, 43100 Karditsa, Greece; (D.T.L.); (C.K.M.); (E.I.K.); (N.S.); (P.J.C.); (K.S.D.); (V.G.P.); (V.S.M.)
| | - Maria V. Bourganou
- Faculty of Public and One Health, University of Thessaly, 43100 Karditsa, Greece; (D.C.C.); (A.I.K.); (M.V.B.)
| | - Dimitra V. Liagka
- Faculty of Animal Science, University of Thessaly, 41110 Larissa, Greece; (N.G.C.V.); (D.V.L.)
| | - Vasileios G. Papatsiros
- Veterinary Faculty, University of Thessaly, 43100 Karditsa, Greece; (D.T.L.); (C.K.M.); (E.I.K.); (N.S.); (P.J.C.); (K.S.D.); (V.G.P.); (V.S.M.)
| | | | - Vasia S. Mavrogianni
- Veterinary Faculty, University of Thessaly, 43100 Karditsa, Greece; (D.T.L.); (C.K.M.); (E.I.K.); (N.S.); (P.J.C.); (K.S.D.); (V.G.P.); (V.S.M.)
| | - Mariangela Caroprese
- Department of Agriculture, Food, Natural Resources and Engineering (DAFNE), University of Foggia, 71122 Foggia, Italy;
| | - Efthymia Petinaki
- University Hospital of Larissa, 41110 Larissa, Greece; (K.T.); (Z.F.); (E.P.)
| | - George C. Fthenakis
- Veterinary Faculty, University of Thessaly, 43100 Karditsa, Greece; (D.T.L.); (C.K.M.); (E.I.K.); (N.S.); (P.J.C.); (K.S.D.); (V.G.P.); (V.S.M.)
- Correspondence:
| |
Collapse
|
9
|
Lianou DT, Fthenakis GC. Use of Antibiotics Against Bacterial Infections on Dairy Sheep and Goat Farms: Patterns of Usage and Associations with Health Management and Human Resources. Antibiotics (Basel) 2022; 11:antibiotics11060753. [PMID: 35740159 PMCID: PMC9219691 DOI: 10.3390/antibiotics11060753] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2022] [Revised: 05/28/2022] [Accepted: 05/31/2022] [Indexed: 11/29/2022] Open
Abstract
The objectives of the study were (a) to describe the patterns of antibiotic usage against four major clinical problems and (b) to evaluate factors that were associated with their use on small ruminant farms. Sheep and goat farmers mostly administered the antibiotics to animals at the dose prescribed (80.4%) and observed the necessary withdrawal period (98.7%), but fewer farmers (22.3%) weighed the animals to calculate their bodyweight before antibiotic administration. For the treatment of clinical mastitis, oxytetracycline, penicillin and streptomycin were the antibiotics used more frequently; 2.03 different antibiotics were used per sheep flock and 2.06 per goat herd, most frequently administered in injectable forms (88.8% of farms). In cases of abortion, oxytetracycline was administered more frequently; 1.12 different antibiotics were used per sheep flock and 1.03 per goat herd. In 94 farms (21.2%), routine administration of antibiotics was performed to newborns; oxytetracycline and ampicillin were administered more often. For the treatment of pneumonia in newborns, oxytetracycline, penicillin and tulathromycin were used more frequently; 1.33 antibiotics were used per sheep flock and 1.29 per goat herd. For the treatment of diarrhoea in lambs and kids, oxytetracycline, amoxicillin and penicillin were the antibiotics used more frequently; 1.34 antibiotics were used per sheep flock and 1.59 per goat herd. Results of multivariable analyses indicated 16 variables associated with the various outcomes for usage of antibiotics for the treatment of the above clinical problems. Of these, 11 variables were associated with the farmers: education of farmers was significant for three outcomes; the age, the experience, the professional involvement and farming family tradition of farmers and the daily period spent at the farm were each significant for one outcome.
Collapse
|
10
|
Detection of Zoonotic Gastrointestinal Pathogens in Dairy Sheep and Goats by Using FilmArray® Multiplex-PCR Technology. Microorganisms 2022; 10:microorganisms10040714. [PMID: 35456765 PMCID: PMC9030461 DOI: 10.3390/microorganisms10040714] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2022] [Revised: 03/16/2022] [Accepted: 03/23/2022] [Indexed: 02/01/2023] Open
Abstract
The objectives of this study were (a) to detect gastrointestinal pathogens in faecal samples of sheep and goats using the FilmArray® GI Panel and (b) to evaluate factors that were associated with their presence. Faecal samples from ewes or does in 70 sheep flocks and 24 goat herds in Greece were tested for the presence of 22 gastrointestinal pathogens by means of the BioFire® FilmArray® Gastrointestinal (GI) Panel. The most frequently detected pathogens were Shiga-like toxin-producing Escherichia coli stx1/stx2 (94.7% of farms), Giardia lamblia (59.6%), and Campylobacter spp. (50.0% of farms). Other pathogens detected were Cryptosporidium spp., Salmonella spp., enterotoxigenic E. coli lt/st, Yersinia enterocolitica, E. coli O157, Rotavirus A, Shigella/enteroinvasive E. coli, and Plesiomonasshigelloides. There was a difference in the prevalence of detection of pathogens between sheep and goat farms only for Salmonella spp.: 18.3% versus 0.0%, respectively. Mixed infections were detected in 76 farms (80.9% of farms), specifically 57 sheep flocks and 19 goat herds, with on average, 2.5 ± 0.1 pathogens detected per farm. The body condition score of ewes in farms, in which only one pathogen was detected in faecal samples, was significantly higher than that of ewes in farms, in which at least two pathogens were detected: 2.55 ± 0.11 versus 2.31 ± 0.04. In sheep flocks, the number of pathogens in faecal samples was significantly higher in farms with semi-extensive management. In goat herds, the number of pathogens in faecal samples was positively correlated with average precipitation and inversely correlated with temperature range in the respective locations.
Collapse
|
11
|
High prevalence of antibiotic resistance in pathogenic foodborne bacteria isolated from bovine milk. Sci Rep 2022; 12:3878. [PMID: 35264647 PMCID: PMC8907330 DOI: 10.1038/s41598-022-07845-6] [Citation(s) in RCA: 20] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2021] [Accepted: 02/07/2022] [Indexed: 01/27/2023] Open
Abstract
This study aimed to investigate the prevalence of foodborne pathogenic bacteria in bovine milk, their antibiogram phenotype, and the carriage of antibiotic resistance genes. Raw bovine milk samples (n = 100) were randomly collected from different suppliers in the northwest of Iran. Antibiotic-resistant patterns and the presence of antibiotic resistance genes were evaluated in the isolates. Escherichia coli, Listeria monocytogenes, Staphylococcus aureus, and Salmonella spp. were isolated from 78%, 47%, 25%, and 21% of samples, respectively. All isolates showed high rates of resistance to amoxicillin, penicillin, and cefalexin. The blaTEM and blaSHV genes were detected in 50.0% and 6.4% of E. coli isolates, respectively. Also, 28.5% and 19.0% of Salmonella isolates were positive for blaTEM and blaSHV. The frequency of mecA and blaZ in S. aureus isolates was 20.0% and 12.0%, respectively. The high prevalence of bovine milk contamination with antimicrobial-resistant species in this study necessitates precise control on antibiotic prescription in veterinary medicine.
Collapse
|
12
|
High Milk Somatic Cell Counts and Increased Teladorsagia Burdens Overshadow Non-Infection-Related Factors as Predictors of Fat and Protein Content of Bulk-Tank Raw Milk in Sheep and Goat Farms. Foods 2022; 11:foods11030443. [PMID: 35159593 PMCID: PMC8834117 DOI: 10.3390/foods11030443] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2021] [Revised: 01/28/2022] [Accepted: 01/30/2022] [Indexed: 11/29/2022] Open
Abstract
This paper presents the results of an extensive countrywide investigation performed in 325 dairy sheep flocks and 119 goat herds throughout Greece. The objectives of the study were (a) to investigate fat and protein content in the bulk-tank raw milk of small ruminant farms in Greece and (b) to identify factors potentially influencing that content and factors that can contribute to increased content. The mean fat/protein contents in bulk-tank raw milk of sheep and goats were 6.16 ± 0.05%/4.43 ± 0.01% and 4.77 ± 0.44%/3.23 ± 0.30%, respectively. Significant differences were seen in protein content between farms in the various parts of the country. For sheep, multivariable analyses revealed breed and age of lamb removal from dams as significant for fat content, and somatic cell counts, management system in the farm, administration of anthelmintic treatment during the last stage of pregnancy, and farmer education as significant for protein content. For goats, significant factors were month into lactation period, age of kid removal from dams, and breed for fat content, and somatic cell counts, month into lactation, grazing duration, and % Teladorsagia larvae in faecal samples for protein content. For concurrently high fat and protein content, in multivariable analyses, the following emerged as significant factors: somatic cell counts in milk, numbers of parasite eggs in faeces, and veterinary collaboration (sheep), and month into lactation and somatic cell counts in milk (goats). The results indicate that high somatic cell counts in milk (reflecting the presence of mastitis) and gastrointestinal parasitic infections (mainly Teladorsagia infection) appear to exert a more significant influence on fat and protein content of milk, in comparison to non-infection-related factors.
Collapse
|
13
|
Safety Issues Regarding the Detection of Antibiotics Residues, Microbial Indicators and Somatic Cell Counts in Ewes’ and Goats’ Milk Reared in Two Different Farming Systems. APPLIED SCIENCES-BASEL 2022. [DOI: 10.3390/app12031009] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Milk samples of ewes’ and goats’ unprocessed milk were collected from milk tanks from various farms in Epirus, Greece and classified in two groups according to the type of farming. Analyses of the samples included microbial inhibition assays to detect the presence of antibiotic residues, isolation of Staphylococcus aureus and Escherichia coli strains as microbiological indicators for susceptibility to antimicrobial medicines, Somatic Cells and Coagulase Negative Staphylococci (CNS) counts. These findings were correlated with each other as well as to the stage of the lactation period and to the type of the farming practices. Monitoring of bulk tank milk for residues of antibiotics should be performed after heating of the milk, on a regular basis, and should include at least two different tests. The results point out that the type of farming affects the CNS counts as well as the prevalence of residues in the milk. Furthermore, the inverse correlation between CNS counts and prevalence of residues of antibiotics suggests a possible protective role of CNS. Resistance of the bacterial indicators to antibiotics was random and relatively rare, perhaps acquired in past due to misuse of antibiotics, turning the indicator microorganisms to reservoir of resistance.
Collapse
|
14
|
Lianou DT, Petinaki E, Cripps PJ, Gougoulis DA, Michael CK, Tsilipounidaki K, Skoulakis A, Katsafadou AI, Vasileiou NGC, Giannoulis T, Voidarou C, Mavrogianni VS, Caroprese M, Fthenakis GC. Antibiotic Resistance of Staphylococci from Bulk-Tank Milk of Sheep Flocks: Prevalence, Patterns, Association with Biofilm Formation, Effects on Milk Quality, and Risk Factors. BIOLOGY 2021; 10:biology10101016. [PMID: 34681114 PMCID: PMC8533144 DOI: 10.3390/biology10101016] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/15/2021] [Revised: 10/07/2021] [Accepted: 10/08/2021] [Indexed: 11/16/2022]
Abstract
Simple Summary This work investigated the presence of staphylococci resistant to antibiotics in the raw milk produced in sheep farms, which is intended for human consumption, in an extensive study performed throughout Greece. In 31% of flocks, staphylococci resistant to at least one antibiotic were recovered; in 12% of flocks, staphylococci resistant to at least three different antibiotic classes were found. Factors potentially associated with recovery of resistant isolates were the lack of experience by farmers (<5 years), the period immediately post lambing, and the intensive management system applied in the flocks. Abstract The objectives of this work were to study prevalence and characteristics of resistance to antibiotics of staphylococcal isolates from the bulk-tank milk of sheep flocks across Greece, to assess possible associations of the presence of antibiotic resistance with the quality of milk in these flocks and to evaluate flock-related factors potentially associated with antibiotic resistance among these isolates. A cross-sectional study was performed in 325 sheep flocks in Greece. Bulk-tank milk samples were collected for bacteriological examination; staphylococcal isolates were evaluated for resistance to 20 antibiotics. Oxacillin-resistant staphylococcal isolates, isolates resistant to any antibiotic, and multi-resistant isolates were recovered from 8.0%, 30.5%, and 12.0% of flocks, respectively. Of 232 isolates, 11.6% were resistant to oxacillin, 46.1% were resistant to at least one antibiotic, and 16.4% were multi-resistant. Resistance was seen more frequently among coagulase-negative (50.6%) than among Staphylococcus aureus (31.5%) isolates. Resistance was more frequent against penicillin and ampicillin (34.1% of isolates), clindamycin (17.7%), and fosfomycin (14.2%). An association was found between biofilm formation by staphylococci and resistance to fosfomycin. For recovery of oxacillin-resistant isolates, the lack of experience by farmers emerged as a significant factor; respective factors for the isolation of staphylococci resistant to any antibiotic or multi-resistant isolates were the early stage of the lactation period (0th–1st month) and the intensive management system applied in the flocks, respectively.
Collapse
Affiliation(s)
- Daphne T. Lianou
- Veterinary Faculty, University of Thessaly, 43100 Karditsa, Greece; (D.T.L.); (P.J.C.); (D.A.G.); (C.K.M.); (V.S.M.)
| | - Efthymia Petinaki
- University Hospital of Larissa, 41110 Larissa, Greece; (E.P.); (K.T.); (A.S.)
| | - Peter J. Cripps
- Veterinary Faculty, University of Thessaly, 43100 Karditsa, Greece; (D.T.L.); (P.J.C.); (D.A.G.); (C.K.M.); (V.S.M.)
| | - Dimitris A. Gougoulis
- Veterinary Faculty, University of Thessaly, 43100 Karditsa, Greece; (D.T.L.); (P.J.C.); (D.A.G.); (C.K.M.); (V.S.M.)
| | - Charalambia K. Michael
- Veterinary Faculty, University of Thessaly, 43100 Karditsa, Greece; (D.T.L.); (P.J.C.); (D.A.G.); (C.K.M.); (V.S.M.)
| | | | - Anargyros Skoulakis
- University Hospital of Larissa, 41110 Larissa, Greece; (E.P.); (K.T.); (A.S.)
| | | | - Natalia G. C. Vasileiou
- Faculty of Animal Science, University of Thessaly, 41110 Larissa, Greece; (N.G.C.V.); (T.G.)
| | - Themis Giannoulis
- Faculty of Animal Science, University of Thessaly, 41110 Larissa, Greece; (N.G.C.V.); (T.G.)
| | | | - Vasia S. Mavrogianni
- Veterinary Faculty, University of Thessaly, 43100 Karditsa, Greece; (D.T.L.); (P.J.C.); (D.A.G.); (C.K.M.); (V.S.M.)
| | - Mariangela Caroprese
- Department of Agriculture, Food, Natural Resources and Engineering (DAFNE), University of Foggia, 71122 Foggia, Italy;
| | - George C. Fthenakis
- Veterinary Faculty, University of Thessaly, 43100 Karditsa, Greece; (D.T.L.); (P.J.C.); (D.A.G.); (C.K.M.); (V.S.M.)
- Correspondence:
| |
Collapse
|
15
|
Kasapidou E, Basdagianni Z, Papadopoulos V, Karaiskou C, Kesidis A, Tsiotsias A. Effects of Intensive and Semi-Intensive Production on Sheep Milk Chemical Composition, Physicochemical Characteristics, Fatty Acid Profile, and Nutritional Indices. Animals (Basel) 2021; 11:ani11092578. [PMID: 34573544 PMCID: PMC8470749 DOI: 10.3390/ani11092578] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2021] [Revised: 08/27/2021] [Accepted: 08/30/2021] [Indexed: 12/04/2022] Open
Abstract
Simple Summary Intensive and semi-intensive sheep farming are the two farming systems usually employed in Greece. Several studies have been conducted on the effect of the farming system on sheep milk fatty acid composition. This study simultaneously examines milk basic composition, physicochemical characteristics, fatty acid composition, and nutritional value according to the production system. Bulk tank milk from farms using the intensive and semi-intensive production systems was analyzed. The results show that grazing can improve the fatty acid composition of milk. Thus, pasture-based feeding strategies could improve the fatty acid composition and the nutritional properties of sheep dairy products. Abstract Dairy sheep farming is a vital sector of the agricultural economy in Greece. Information on the effect of the farming system on sheep milk characteristics is critical for producing dairy products with improved nutritional value according to the current guidelines for healthy food consumption. This study aimed to investigate the basic composition, physicochemical characteristics, fatty acid composition, and nutritional indices of milk produced in intensive and semi-intensive sheep farms. Bulk tank milk samples from 20 intensive and 20 semi-intensive sheep farms were examined. Sheep in the intensive farms were kept indoors and were fed with roughage, silage, and concentrates. Sheep in the semi-intensive farms were kept indoors during the night and were moved to the pastures during the day. Sheep were fed with roughage, silage, and concentrates in combination with grazing. Milk composition and somatic cell count were determined with automatic analyzers. The physicochemical characteristics were determined with standard laboratory methods. The fatty acid composition was analyzed by gas chromatography. The farming system did not affect milk chemical composition and physicochemical characteristics. However, milk fatty acid composition and nutritional value were significantly improved in milk from farms using the semi-intensive production system, and this favorable effect was attributed to the inclusion of pasture in sheep diet.
Collapse
Affiliation(s)
- Eleni Kasapidou
- Department of Agriculture, School of Agricultural Sciences, University of Western Macedonia, 53100 Florina, Greece; (V.P.); (A.K.); (A.T.)
- Correspondence:
| | - Zoitsa Basdagianni
- Department of Animal Production, School of Agriculture, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece; (Z.B.); (C.K.)
| | - Vasileios Papadopoulos
- Department of Agriculture, School of Agricultural Sciences, University of Western Macedonia, 53100 Florina, Greece; (V.P.); (A.K.); (A.T.)
| | - Chrysoula Karaiskou
- Department of Animal Production, School of Agriculture, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece; (Z.B.); (C.K.)
| | - Anastasios Kesidis
- Department of Agriculture, School of Agricultural Sciences, University of Western Macedonia, 53100 Florina, Greece; (V.P.); (A.K.); (A.T.)
| | - Arsenios Tsiotsias
- Department of Agriculture, School of Agricultural Sciences, University of Western Macedonia, 53100 Florina, Greece; (V.P.); (A.K.); (A.T.)
| |
Collapse
|
16
|
Association of Staphylococcal Populations on Teatcups of Milking Parlours with Vaccination against Staphylococcal Mastitis in Sheep and Goat Farms. Pathogens 2021; 10:pathogens10040385. [PMID: 33804878 PMCID: PMC8063832 DOI: 10.3390/pathogens10040385] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2021] [Revised: 03/20/2021] [Accepted: 03/22/2021] [Indexed: 11/17/2022] Open
Abstract
There is a paucity of information regarding staphylococcal populations on teatcups of milking parlours in sheep and goat farms. The objectives were to describe the populations of staphylococci on teatcups in milking parlours in sheep or goat farms in two field investigations throughout Greece and to potentially associate the findings with the use of anti-staphylococcal mastitis vaccinations in the farms visited during the two investigations. In a cross-sectional (255 sheep and 66 goat farms across Greece) and a longitudinal (12 sheep farms, four samplings, throughout lactation) study, swab samples were collected from 1418 teatcups (upper and lower part) for staphylococcal recovery, identification and assessment of biofilm-formation. A total of 328 contaminated teatcups (23.1%) were found in 105 sheep (41.2%) and 35 goat (53.0%) farms. Staphylococci were more frequently recovered from the upper than the lower part of teatcups: 269 versus 139 teatcups, respectively. After identification, 253 staphylococcal isolates were found: Staphylococcus aureus, Staphylococcus equorum, Staphylococcus lentus, and Staphylococcus capitis predominated. Of these isolates, 87.4% were biofilm-forming. The proportion of contaminated teatcups was smaller in farms where vaccination against anti-staphylococcal mastitis in general or vaccination specifically against mastitis caused specifically by biofilm-forming staphylococcal strains was applied, 19.7% or 10.9%, respectively, versus 25.5% in farms without vaccination. In the longitudinal study, contaminated teatcups were identified in 28 (58.3%) sampling occasions, with staphylococci being recovered more frequently from their upper part. The same species as in the cross-sectional study predominated. Of these isolates, 61.9% were biofilm-forming. In farms where vaccination against mastitis caused specifically by biofilm-forming staphylococcal strains was applied, the proportion of contaminated teatcups was smaller: 20.4% versus 48.3% in farms without vaccination. There were no differences in proportions of contaminated teatcups between sampling occasions. In conclusion, the great majority of staphylococci recovered from teatcups of milking parlours in sheep and goat farms included biofilm-forming isolates. Reduced staphylococcal isolation was noted in farms where anti-staphylococcal vaccination was performed; this was possibly the effect of reduced excretion of staphylococci in the milk of vaccinated animals.
Collapse
|