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Benedetto A, Robotti E, Belay MH, Ghignone A, Fabbris A, Goggi E, Cerruti S, Manfredi M, Barberis E, Peletto S, Arillo A, Giaccio N, Masini MA, Brandi J, Cecconi D, Marengo E, Brizio P. Multi-Omics Approaches for Freshness Estimation and Detection of Illicit Conservation Treatments in Sea Bass ( Dicentrarchus Labrax): Data Fusion Applications. Int J Mol Sci 2024; 25:1509. [PMID: 38338789 PMCID: PMC10855268 DOI: 10.3390/ijms25031509] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2023] [Revised: 01/18/2024] [Accepted: 01/20/2024] [Indexed: 02/12/2024] Open
Abstract
Fish freshness consists of complex endogenous and exogenous processes; therefore, the use of a few parameters to unravel illicit practices could be insufficient. Moreover, the development of strategies for the identification of such practices based on additives known to prevent and/or delay fish spoilage is still limited. The paper deals with the identification of the effect played by a Cafodos solution on the conservation state of sea bass at both short-term (3 h) and long-term (24 h). Controls and treated samples were characterized by a multi-omic approach involving proteomics, lipidomics, metabolomics, and metagenomics. Different parts of the fish samples were studied (muscle, skin, eye, and gills) and sampled through a non-invasive procedure based on EVA strips functionalized by ionic exchange resins. Data fusion methods were then applied to build models able to discriminate between controls and treated samples and identify the possible markers of the applied treatment. The approach was effective in the identification of the effect played by Cafodos that proved to be different in the short- and long-term and complex, involving proteins, lipids, and small molecules to a different extent.
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Affiliation(s)
- Alessandro Benedetto
- Istituto Zooprofilattico Sperimentale del Piemonte, Liguria e Valle d’Aosta, Via Bologna 148, 10154 Torino, Italy; (A.B.); (S.P.); (A.A.); (N.G.); (P.B.)
| | - Elisa Robotti
- Department of Sciences and Technological Innovation, University of Piemonte Orientale, Viale Michel 11, 15121 Alessandria, Italy; (M.H.B.); (A.G.); (A.F.); (E.G.); (S.C.); (E.B.); (M.A.M.); (E.M.)
| | - Masho Hilawie Belay
- Department of Sciences and Technological Innovation, University of Piemonte Orientale, Viale Michel 11, 15121 Alessandria, Italy; (M.H.B.); (A.G.); (A.F.); (E.G.); (S.C.); (E.B.); (M.A.M.); (E.M.)
- Department of Chemistry, Mekelle University, Mekelle P.O. Box 231, Ethiopia
| | - Arianna Ghignone
- Department of Sciences and Technological Innovation, University of Piemonte Orientale, Viale Michel 11, 15121 Alessandria, Italy; (M.H.B.); (A.G.); (A.F.); (E.G.); (S.C.); (E.B.); (M.A.M.); (E.M.)
| | - Alessia Fabbris
- Department of Sciences and Technological Innovation, University of Piemonte Orientale, Viale Michel 11, 15121 Alessandria, Italy; (M.H.B.); (A.G.); (A.F.); (E.G.); (S.C.); (E.B.); (M.A.M.); (E.M.)
| | - Eleonora Goggi
- Department of Sciences and Technological Innovation, University of Piemonte Orientale, Viale Michel 11, 15121 Alessandria, Italy; (M.H.B.); (A.G.); (A.F.); (E.G.); (S.C.); (E.B.); (M.A.M.); (E.M.)
| | - Simone Cerruti
- Department of Sciences and Technological Innovation, University of Piemonte Orientale, Viale Michel 11, 15121 Alessandria, Italy; (M.H.B.); (A.G.); (A.F.); (E.G.); (S.C.); (E.B.); (M.A.M.); (E.M.)
| | - Marcello Manfredi
- Department of Translational Medicine, University of Piemonte Orientale, Via Solaroli 17, 28100 Novara, Italy;
| | - Elettra Barberis
- Department of Sciences and Technological Innovation, University of Piemonte Orientale, Viale Michel 11, 15121 Alessandria, Italy; (M.H.B.); (A.G.); (A.F.); (E.G.); (S.C.); (E.B.); (M.A.M.); (E.M.)
| | - Simone Peletto
- Istituto Zooprofilattico Sperimentale del Piemonte, Liguria e Valle d’Aosta, Via Bologna 148, 10154 Torino, Italy; (A.B.); (S.P.); (A.A.); (N.G.); (P.B.)
| | - Alessandra Arillo
- Istituto Zooprofilattico Sperimentale del Piemonte, Liguria e Valle d’Aosta, Via Bologna 148, 10154 Torino, Italy; (A.B.); (S.P.); (A.A.); (N.G.); (P.B.)
| | - Nunzia Giaccio
- Istituto Zooprofilattico Sperimentale del Piemonte, Liguria e Valle d’Aosta, Via Bologna 148, 10154 Torino, Italy; (A.B.); (S.P.); (A.A.); (N.G.); (P.B.)
| | - Maria Angela Masini
- Department of Sciences and Technological Innovation, University of Piemonte Orientale, Viale Michel 11, 15121 Alessandria, Italy; (M.H.B.); (A.G.); (A.F.); (E.G.); (S.C.); (E.B.); (M.A.M.); (E.M.)
| | - Jessica Brandi
- Department of Biotechnology, University of Verona, Strada le Grazie 15, 37134 Verona, Italy; (J.B.); (D.C.)
| | - Daniela Cecconi
- Department of Biotechnology, University of Verona, Strada le Grazie 15, 37134 Verona, Italy; (J.B.); (D.C.)
| | - Emilio Marengo
- Department of Sciences and Technological Innovation, University of Piemonte Orientale, Viale Michel 11, 15121 Alessandria, Italy; (M.H.B.); (A.G.); (A.F.); (E.G.); (S.C.); (E.B.); (M.A.M.); (E.M.)
| | - Paola Brizio
- Istituto Zooprofilattico Sperimentale del Piemonte, Liguria e Valle d’Aosta, Via Bologna 148, 10154 Torino, Italy; (A.B.); (S.P.); (A.A.); (N.G.); (P.B.)
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