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Khrunin AV, Khvorykh GV, Arapova AS, Kulinskaya AE, Koltsova EA, Petrova EA, Kimelfeld EI, Limborska SA. The Study of the Association of Polymorphisms in LSP1, GPNMB, PDPN, TAGLN, TSPO, and TUBB6 Genes with the Risk and Outcome of Ischemic Stroke in the Russian Population. Int J Mol Sci 2023; 24:ijms24076831. [PMID: 37047799 PMCID: PMC10095190 DOI: 10.3390/ijms24076831] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2023] [Revised: 03/31/2023] [Accepted: 04/03/2023] [Indexed: 04/09/2023] Open
Abstract
To date, there has been great progress in understanding the genetic basis of ischemic stroke (IS); however, several aspects of the condition remain underexplored, including the influence of genetic factors on post-stroke outcomes and the identification of causative loci. We proposed that an analysis of the results obtained from animal models of brain ischemia could be helpful. To this end, we developed a bioinformatic approach for exploring single-nucleotide polymorphisms (SNPs) in human orthologs of rat genes expressed differentially after induced brain ischemia. Using this approach, we identified and analyzed 11 SNPs from 6 genes in 553 Russian individuals (331 patients with IS and 222 controls). We assessed the association of SNPs with the risk of IS and IS outcomes. We found that the SNPs rs858239 (GPNMB), rs907611 (LSP1), and rs494356 (TAGLN) were associated with different parameters of IS functional outcomes. In addition, the SNP rs1261025 (PDPN) was associated significantly with IS itself (p = 0.0188, recessive model). All these associations were demonstrated for the first time. Analysis of the literature suggests that they should be characterized as being inflammation related. This supports the pivotal role of inflammation in both the incidence of stroke and post-stroke outcomes. We believe the findings reported here will help with stroke prognosis in the future.
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Affiliation(s)
- Andrey V. Khrunin
- National Research Centre “Kurchatov Institute”, Kurchatov Sq. 2, Moscow 123182, Russia
| | - Gennady V. Khvorykh
- National Research Centre “Kurchatov Institute”, Kurchatov Sq. 2, Moscow 123182, Russia
| | - Anna S. Arapova
- National Research Centre “Kurchatov Institute”, Kurchatov Sq. 2, Moscow 123182, Russia
- Faculty of Biotechnology and Industrial Ecology, Mendeleev University of Chemical Technology of Russia, Miusskaya Sq. 9, Moscow 125047, Russia
| | - Anna E. Kulinskaya
- National Research Centre “Kurchatov Institute”, Kurchatov Sq. 2, Moscow 123182, Russia
- Faculty of Biotechnology and Industrial Ecology, Mendeleev University of Chemical Technology of Russia, Miusskaya Sq. 9, Moscow 125047, Russia
| | - Evgeniya A. Koltsova
- Department of Neurology, Neurosurgery and Medical Genetics of Pirogov Russian National Research Medical University, Moscow 117997, Russia
| | - Elizaveta A. Petrova
- Department of Neurology, Neurosurgery and Medical Genetics of Pirogov Russian National Research Medical University, Moscow 117997, Russia
| | - Ekaterina I. Kimelfeld
- Department of Neurology, Neurosurgery and Medical Genetics of Pirogov Russian National Research Medical University, Moscow 117997, Russia
| | - Svetlana A. Limborska
- National Research Centre “Kurchatov Institute”, Kurchatov Sq. 2, Moscow 123182, Russia
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Limborska SA, Filippenkov IB. Special Issue: “Genomics of Stroke”. Genes (Basel) 2022; 13:genes13030415. [PMID: 35327969 PMCID: PMC8955494 DOI: 10.3390/genes13030415] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2022] [Accepted: 01/29/2022] [Indexed: 02/04/2023] Open
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