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Ning Z, Wang S, Guo C, Zhang M. The impact of environmental factors on the transport and survival of pathogens in agricultural soils from karst areas of Yunnan province, China: Laboratory column simulated leaching experiments. Front Microbiol 2023; 14:1143900. [PMID: 37007467 PMCID: PMC10060967 DOI: 10.3389/fmicb.2023.1143900] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2023] [Accepted: 02/22/2023] [Indexed: 03/18/2023] Open
Abstract
IntroductionGroundwater is considered the best candidate for drinking water supply in the karst area. The groundwater water resources, however, are vulnerable to pathogenic microorganism contamination because of the typically thin soil layers overlying aquifers and the high permeability of the aquifer host rock, resulting in short residence times and low natural attenuation capacities. Until now, little attention has been paid to the critical environmental factors affecting the pathogenic microorganism contamination in soil-groundwater systems in the karst area.MethodsIn the study, orthogonality column experiments with controlling ambient temperatures, pH values of inlet water, and soil porosities were carried out to investigate the transport and lifespan of pathogenic microorganisms in the leachate of agricultural soils in the karst area of Yunnan province, China. The pathogenic indicators, i.e., total bacteria count (TBC) and total coliforms count (TCC), and hydrochemical parameters, i.e., pH and permanganate index (CODMn) in the leaching water, were systematically monitored.Results and DiscussionThe results showed that bacteria including coliforms can survive for prolonged periods of time in karst soils. The soils overlying the karst rocks were unable to impede the bacteria from seeping into the groundwater. The soils, in turn, likely served as both reservoirs and incubators for pathogenic bacteria. The ambient temperature was the most predominant influential factor affecting both TBC and TCC. The bacteria concentrations were proportional to the temperature in the leachate. Therefore, more attention should be paid to temperature variations in protecting the water supply, particularly in the high-temperature period, such as during the summer months.
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Affiliation(s)
- Zhuo Ning
- Institute of Hydrogeology and Environmental Geology, Chinese Academy of Geological Sciences, Shijiazhuang, China
- Key Laboratory of Groundwater Remediation of Hebei Province and China Geological Survey, Zhengding, China
| | - Shuaiwei Wang
- Institute of Hydrogeology and Environmental Geology, Chinese Academy of Geological Sciences, Shijiazhuang, China
- *Correspondence: Shuaiwei Wang,
| | - Caijuan Guo
- Institute of Hydrogeology and Environmental Geology, Chinese Academy of Geological Sciences, Shijiazhuang, China
| | - Min Zhang
- Institute of Hydrogeology and Environmental Geology, Chinese Academy of Geological Sciences, Shijiazhuang, China
- Key Laboratory of Groundwater Remediation of Hebei Province and China Geological Survey, Zhengding, China
- Min Zhang,
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A covariate-driven beta-binomial integer-valued GARCH model for bounded counts with an application. METRIKA 2023. [DOI: 10.1007/s00184-023-00894-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
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Boudou M, Cleary E, ÓhAiseadha C, Garvey P, McKeown P, O'Dwyer J, Hynds P. Spatiotemporal epidemiology of cryptosporidiosis in the Republic of Ireland, 2008-2017: development of a space-time "cluster recurrence" index. BMC Infect Dis 2021; 21:880. [PMID: 34454462 PMCID: PMC8401175 DOI: 10.1186/s12879-021-06598-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2021] [Accepted: 08/22/2021] [Indexed: 11/24/2022] Open
Abstract
Background Ireland frequently reports the highest annual Crude Incidence Rates (CIRs) of cryptosporidiosis in the EU, with national CIRs up to ten times the EU average. Accordingly, the current study sought to examine the spatiotemporal trends associated with this potentially severe protozoan infection. Methods Overall, 4509 cases of infection from January 2008 to December 2017 were geo-referenced to a Census Small Area (SA), with an ensemble of geo-statistical approaches including seasonal decomposition, Local Moran’s I, and space–time scanning used to elucidate spatiotemporal patterns of infection. Results One or more confirmed cases were notified in 3413 of 18,641 Census SAs (18.3%), with highest case numbers occurring in the 0–5-year range (n = 2672, 59.3%). Sporadic cases were more likely male (OR 1.4) and rural (OR 2.4), with outbreak-related cases more likely female (OR 1.4) and urban (OR 1.5). Altogether, 55 space–time clusters (≥ 10 confirmed cases) of sporadic infection were detected, with three “high recurrence” regions identified; no large urban conurbations were present within recurrent clusters. Conclusions Spatiotemporal analysis represents an important indicator of infection patterns, enabling targeted epidemiological intervention and surveillance. Presented results may also be used to further understand the sources, pathways, receptors, and thus mechanisms of cryptosporidiosis in Ireland. Supplementary Information The online version contains supplementary material available at 10.1186/s12879-021-06598-3.
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Affiliation(s)
- M Boudou
- Environmental Sustainability and Health Institute (ESHI), Technological University Dublin, Greenway Hub, Grangegorman, Dublin 7, D07 H6K8, Republic of Ireland.
| | - E Cleary
- Environmental Sustainability and Health Institute (ESHI), Technological University Dublin, Greenway Hub, Grangegorman, Dublin 7, D07 H6K8, Republic of Ireland
| | - C ÓhAiseadha
- Department of Public Health, Health Service Executive (HSE), Dr. Steevens' Hospital, Dublin 8, Republic of Ireland
| | - P Garvey
- Health Protection Surveillance Centre, 25 Middle Gardiner Street, Dublin 1, Republic of Ireland
| | - P McKeown
- Health Protection Surveillance Centre, 25 Middle Gardiner Street, Dublin 1, Republic of Ireland
| | - J O'Dwyer
- School of Biological, Earth and Environmental Sciences, Environmental Research Institute (ERI), University College Cork, Cork, Republic of Ireland.,Irish Centre for Research in Applied Geosciences (iCRAG), University College Dublin, Dublin 4, Republic of Ireland
| | - Paul Hynds
- Environmental Sustainability and Health Institute (ESHI), Technological University Dublin, Greenway Hub, Grangegorman, Dublin 7, D07 H6K8, Republic of Ireland. .,Irish Centre for Research in Applied Geosciences (iCRAG), University College Dublin, Dublin 4, Republic of Ireland.
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Getaneh DK, Hordofa LO, Ayana DA, Tessema TS, Regassa LD. Prevalence of Escherichia coli O157:H7 and associated factors in under-five children in Eastern Ethiopia. PLoS One 2021; 16:e0246024. [PMID: 33508023 PMCID: PMC7842931 DOI: 10.1371/journal.pone.0246024] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2020] [Accepted: 01/12/2021] [Indexed: 01/07/2023] Open
Abstract
BACKGROUND Escherichia coli O157:H7 (E. coli O157:H7) is one of the most potent zoonotic pathogens that causes mild diarrhea and leads to hemolytic uremic syndrome or death. This study was aimed to assess the prevalence and determinants of E. coli O157:H7 related to diarrhea among under-five children with acute diarrhea. METHODS A cross-sectional study design was carried out in 2018 on 378 under-five-year children recruited randomly from hospitals in Eastern Ethiopia. Stool specimens were collected and processed using enrichment, differential and selective medium. Among isolates, E. coli O157:H7 was confirmed using latex test (Oxoid, Basingstoke, Hants, England). Factors associated with E. coli O157:H7 infection were identified using binary and multivariable logistic regression. Associations were reported by odds ratio with 95% confidence interval. RESULTS The prevalence of E. coli O157:H7 related diarrhea was 15.3% (95%CI: 11.8-19.5). The E. coli O157:H7 infection was positively associated with rural residence (AOR;3.75, 95%CI:1.26-11.20), consumption of undercooked meat (AOR;3.95, 95%CI: 1.23-12.67), raw vegetables and/or fruit juice (AOR;3.37, 95%CI:1.32-8.62), presence of bloody diarrhea (AOR;4.42, 95% CI:1.78-10.94), number of under-five children in a household (AOR;7.16, 95%CI: 2.90-17.70), presence of person with diarrhea in a household (AOR;4.22, 95% CI: 1.84-12.69), owning domestic animal (AOR;3.87, 95% CI: 1.48-10.12) and uneducated mother (AOR;3.14, 95%CI: 1.05-9.42). CONCLUSION The Prevalence of E. coli O157:H7 related diarrhea among under-five children is relatively high in Eastern Ethiopia. The E. coli infection was associated with sanitation and hygiene in a household. Thus, education focused on food cooking and handling, child care, and household sanitation associated with animal manure in rural resident children are helpful in.
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Nganje TN, Agbor EE, Adamu CI, Ukpong AJ, Katte BF, Edet AE, Hursthouse AS. Public health challenges as a result of contaminated water sources in Kumba, Cameroon. ENVIRONMENTAL GEOCHEMISTRY AND HEALTH 2020; 42:1167-1195. [PMID: 31346854 DOI: 10.1007/s10653-019-00375-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2019] [Accepted: 07/09/2019] [Indexed: 06/10/2023]
Abstract
Kumba, the largest city in the Southwest Region of Cameroon, is characterized by the prevalence of waterborne diseases due to ingestion of contaminated water. Sixty-four water samples were collected from different sources including pipe-borne (PW), surface/stream (SW) and groundwater (HDW) sources as well as the catchment area (CW) in Kumba metropolis. These water samples were analyzed for physicochemical and microbiological parameters and the results compared with international standards. The results of physiochemical parameters showed that the water samples were mildly acidic, not saline and soft. The levels of some trace elements (Al, Fe, As, Cd, Co, Cu, Fe, Mn, Pb) in some water samples were higher than permissible limits. Water Quality Index, Contamination Index (Cd) and Trace Element Toxicity Index were used to evaluate the water samples. Results showed that most of the water sources are poor and unsafe for consumption due to high concentrations of Al, Fe, Mn and Pb. Microbiological parameters revealed that 74% of the water samples are in the class of high risk to grossly polluted. Pollution associated with the catchment area was probably the main factor controlling the quality of pipe-borne water, while that of the surface and groundwater may be attributed to geogenic and anthropogenic sources including unlined pit latrines. Water sources, especially those ingested by humans in Kumba, should be properly managed including regular treatment so as to protect the health of humans and improve the quality of life.
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Affiliation(s)
- T N Nganje
- Department of Geology, University of Calabar, P.M.B. 1115, Calabar, Nigeria.
| | - E E Agbor
- Department of Biochemistry, University of Dschang, P.O.B. 67, Calabar, Cameroon
| | - C I Adamu
- Department of Geology, University of Calabar, P.M.B. 1115, Calabar, Nigeria
| | - A J Ukpong
- Department of Geology, University of Calabar, P.M.B. 1115, Calabar, Nigeria
| | - B F Katte
- Department of Animal Production, University of Dschang, P.O.B. 222, Calabar, Cameroon
| | - A E Edet
- Department of Geology, University of Calabar, P.M.B. 1115, Calabar, Nigeria
| | - A S Hursthouse
- School of Computing, Engineering and Physical Sciences, University of the West of Scotland, Paisley, Scotland, PA1 2BE, UK
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Buckerfield SJ, Waldron S, Quilliam RS, Naylor LA, Li S, Oliver DM. How can we improve understanding of faecal indicator dynamics in karst systems under changing climatic, population, and land use stressors? - Research opportunities in SW China. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 646:438-447. [PMID: 30056232 DOI: 10.1016/j.scitotenv.2018.07.292] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2018] [Revised: 07/10/2018] [Accepted: 07/20/2018] [Indexed: 06/08/2023]
Abstract
Human exposure to water contaminated with faeces is a leading cause of worldwide ill-health. Contaminated water can be transmitted rapidly in karst terrain as a result of the connectivity of surface and groundwater systems, high transmissivity of aquifers over large areas, and well-developed underground conduit systems. Faecal indicator organisms (FIOs) are the most widely-used indicator of faecal contamination and microbial water quality; however, the conceptualisation of FIO risk and associated sources, pathways, and survival dynamics of FIOs in karst landscapes requires a degree of modification from traditional conceptual models of FIO fate and transfer in non-karst systems. While a number of reviews have provided detailed accounts of the state-of-the-science concerning FIO dynamics in catchments, specific reference to the uniqueness of karst and its influence on FIO fate and transfer is a common omission. In response, we use a mixed methods approach of critical review combined with a quantitative survey of 372 residents of a typical karst catchment in the southwest China karst region (SWCKR) to identify emerging research needs in an area where much of the population lives in poverty and is groundwater dependent. We found that the key research needs are to understand: 1) overland and subsurface FIO export pathways in karst hydrology under varying flow conditions; 2) urban and agricultural sources and loading in mixed land-use paddy farming catchments; 3) FIO survival in paddy farming systems and environmental matrices in karst terrain; 4) sediment-FIO interactions and legacy risk in karst terrain; and 5) key needs for improved hydrological modelling and risk assessment in karst landscapes. Improved knowledge of these research themes will enable the development of evidence-based faecal contamination mitigation strategies for managing land and water resources in the SWCKR, which is highly vulnerable to climate change impacts on water supply and quality of water resources.
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Affiliation(s)
- Sarah J Buckerfield
- Biological and Environmental Sciences, Faculty of Natural Sciences, University of Stirling, Stirling FK9 4LA, UK; Institute of Surface-Earth System Science, Tianjin University, Tianjin 300072, China.
| | - Susan Waldron
- School of Geographical and Earth Sciences, University of Glasgow, Glasgow G12 8QQ, UK
| | - Richard S Quilliam
- Biological and Environmental Sciences, Faculty of Natural Sciences, University of Stirling, Stirling FK9 4LA, UK
| | - Larissa A Naylor
- School of Geographical and Earth Sciences, University of Glasgow, Glasgow G12 8QQ, UK
| | - Siliang Li
- Institute of Surface-Earth System Science, Tianjin University, Tianjin 300072, China
| | - David M Oliver
- Biological and Environmental Sciences, Faculty of Natural Sciences, University of Stirling, Stirling FK9 4LA, UK
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Tarr GAM, Shringi S, Phipps AI, Besser TE, Mayer J, Oltean HN, Wakefield J, Tarr PI, Rabinowitz P. Geogenomic Segregation and Temporal Trends of Human Pathogenic Escherichia coli O157:H7, Washington, USA, 2005-2014 1. Emerg Infect Dis 2018; 24:32-39. [PMID: 29260688 PMCID: PMC5749469 DOI: 10.3201/eid2401.170851] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022] Open
Abstract
The often-noted and persistent increased incidence of Escherichia
coli O157:H7 infections in rural areas is not well understood. We
used a cohort of E. coli O157:H7 cases reported in Washington,
USA, during 2005–2014, along with phylogenomic characterization of the
infecting isolates, to identify geographic segregation of and temporal trends in
specific phylogenetic lineages of E. coli O157:H7. Kernel
estimation and generalized additive models demonstrated that pathogen lineages
were spatially segregated during the period of analysis and identified a focus
of segregation spanning multiple, predominantly rural, counties for each of the
main clinical lineages, Ib, IIa, and IIb. These results suggest the existence of
local reservoirs from which humans are infected. We also noted a secular
increase in the proportion of lineage IIa and IIb isolates. Spatial segregation
by phylogenetic lineage offers the potential to identify local reservoirs and
intervene to prevent continued transmission.
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