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For: de la Fuente IM. Quantitative analysis of cellular metabolic dissipative, self-organized structures. Int J Mol Sci 2010;11:3540-99. [PMID: 20957111 PMCID: PMC2956111 DOI: 10.3390/ijms11093540] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2010] [Revised: 09/11/2010] [Accepted: 09/12/2010] [Indexed: 11/16/2022]  Open
Number Cited by Other Article(s)
1
De la Fuente IM, Carrasco-Pujante J, Camino-Pontes B, Fedetz M, Bringas C, Pérez-Samartín A, Pérez-Yarza G, López JI, Malaina I, Cortes JM. Systemic cellular migration: The forces driving the directed locomotion movement of cells. PNAS NEXUS 2024;3:pgae171. [PMID: 38706727 PMCID: PMC11067954 DOI: 10.1093/pnasnexus/pgae171] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/21/2023] [Accepted: 04/11/2024] [Indexed: 05/07/2024]
2
Correspondence insights into the role of genes in cell functionality. Comments on "The gene: An appraisal" by K. Baverstock. PROGRESS IN BIOPHYSICS AND MOLECULAR BIOLOGY 2021;167:152-160. [PMID: 34624359 DOI: 10.1016/j.pbiomolbio.2021.09.006] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/25/2021] [Revised: 09/27/2021] [Accepted: 09/30/2021] [Indexed: 11/21/2022]
3
De la Fuente IM, Martínez L, Carrasco-Pujante J, Fedetz M, López JI, Malaina I. Self-Organization and Information Processing: From Basic Enzymatic Activities to Complex Adaptive Cellular Behavior. Front Genet 2021;12:644615. [PMID: 34093645 PMCID: PMC8176287 DOI: 10.3389/fgene.2021.644615] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2020] [Accepted: 04/16/2021] [Indexed: 11/13/2022]  Open
4
Maria G. In silico Determination of Some Conditions Leading to Glycolytic Oscillations and Their Interference With Some Other Processes in E. coli Cells. Front Chem 2020;8:526679. [PMID: 33195042 PMCID: PMC7655968 DOI: 10.3389/fchem.2020.526679] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2020] [Accepted: 09/23/2020] [Indexed: 01/05/2023]  Open
5
Chanda P, Costa E, Hu J, Sukumar S, Van Hemert J, Walia R. Information Theory in Computational Biology: Where We Stand Today. ENTROPY (BASEL, SWITZERLAND) 2020;22:E627. [PMID: 33286399 PMCID: PMC7517167 DOI: 10.3390/e22060627] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/30/2020] [Revised: 05/31/2020] [Accepted: 06/03/2020] [Indexed: 12/30/2022]
6
Cera L, Schalley CA. Under Diffusion Control: from Structuring Matter to Directional Motion. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2018;30:e1707029. [PMID: 29931699 DOI: 10.1002/adma.201707029] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2017] [Revised: 03/09/2018] [Indexed: 06/08/2023]
7
Kirby RJ, Qi F, Phatak S, Smith LH, Malany S. Assessment of drug-induced arrhythmic risk using limit cycle and autocorrelation analysis of human iPSC-cardiomyocyte contractility. Toxicol Appl Pharmacol 2016;305:250-258. [DOI: 10.1016/j.taap.2016.06.025] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2016] [Revised: 05/27/2016] [Accepted: 06/21/2016] [Indexed: 01/08/2023]
8
Moradi H, Majd VJ. Robust control of uncertain nonlinear switched genetic regulatory networks with time delays: A redesign approach. Math Biosci 2016;275:10-7. [PMID: 26924600 DOI: 10.1016/j.mbs.2016.02.006] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2014] [Revised: 02/10/2016] [Accepted: 02/17/2016] [Indexed: 10/22/2022]
9
Information theory in systems biology. Part I: Gene regulatory and metabolic networks. Semin Cell Dev Biol 2015;51:3-13. [PMID: 26701126 DOI: 10.1016/j.semcdb.2015.12.007] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2015] [Accepted: 12/07/2015] [Indexed: 11/22/2022]
10
De la Fuente IM. Elements of the cellular metabolic structure. Front Mol Biosci 2015;2:16. [PMID: 25988183 PMCID: PMC4428431 DOI: 10.3389/fmolb.2015.00016] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2014] [Accepted: 04/12/2015] [Indexed: 12/19/2022]  Open
11
De la Fuente IM, Cortés JM, Valero E, Desroches M, Rodrigues S, Malaina I, Martínez L. On the dynamics of the adenylate energy system: homeorhesis vs homeostasis. PLoS One 2014;9:e108676. [PMID: 25303477 PMCID: PMC4193753 DOI: 10.1371/journal.pone.0108676] [Citation(s) in RCA: 68] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2014] [Accepted: 09/03/2014] [Indexed: 11/20/2022]  Open
12
Metabolic Dissipative Structures. ACTA ACUST UNITED AC 2013. [DOI: 10.1007/978-3-642-38505-6_8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
13
De la Fuente IM, Cortes JM, Pelta DA, Veguillas J. Attractor metabolic networks. PLoS One 2013;8:e58284. [PMID: 23554883 PMCID: PMC3598861 DOI: 10.1371/journal.pone.0058284] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2012] [Accepted: 02/01/2013] [Indexed: 11/18/2022]  Open
14
Compartmentalization and metabolic channeling for multienzymatic biosynthesis: practical strategies and modeling approaches. ADVANCES IN BIOCHEMICAL ENGINEERING/BIOTECHNOLOGY 2013;137:41-65. [PMID: 23934361 DOI: 10.1007/10_2013_221] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
15
Guzun R, Gonzalez-Granillo M, Karu-Varikmaa M, Grichine A, Usson Y, Kaambre T, Guerrero-Roesch K, Kuznetsov A, Schlattner U, Saks V. Regulation of respiration in muscle cells in vivo by VDAC through interaction with the cytoskeleton and MtCK within Mitochondrial Interactosome. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2012;1818:1545-54. [PMID: 22244843 DOI: 10.1016/j.bbamem.2011.12.034] [Citation(s) in RCA: 71] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2011] [Revised: 12/26/2011] [Accepted: 12/29/2011] [Indexed: 01/06/2023]
16
Molecular system bioenergics of the heart: experimental studies of metabolic compartmentation and energy fluxes versus computer modeling. Int J Mol Sci 2011;12:9296-331. [PMID: 22272134 PMCID: PMC3257131 DOI: 10.3390/ijms12129296] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2011] [Revised: 11/30/2011] [Accepted: 11/30/2011] [Indexed: 12/11/2022]  Open
17
Fuente IMDL, Cortes JM, Perez-Pinilla MB, Ruiz-Rodriguez V, Veguillas J. The metabolic core and catalytic switches are fundamental elements in the self-regulation of the systemic metabolic structure of cells. PLoS One 2011;6:e27224. [PMID: 22125607 PMCID: PMC3220688 DOI: 10.1371/journal.pone.0027224] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2011] [Accepted: 10/12/2011] [Indexed: 11/18/2022]  Open
18
Tepp K, Shevchuk I, Chekulayev V, Timohhina N, Kuznetsov AV, Guzun R, Saks V, Kaambre T. High efficiency of energy flux controls within mitochondrial interactosome in cardiac intracellular energetic units. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2011;1807:1549-61. [PMID: 21872567 DOI: 10.1016/j.bbabio.2011.08.005] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/21/2011] [Revised: 07/27/2011] [Accepted: 08/12/2011] [Indexed: 02/07/2023]
19
Saks V, Kuznetsov AV, Gonzalez-Granillo M, Tepp K, Timohhina N, Karu-Varikmaa M, Kaambre T, Dos Santos P, Boucher F, Guzun R. Intracellular Energetic Units regulate metabolism in cardiac cells. J Mol Cell Cardiol 2011;52:419-36. [PMID: 21816155 DOI: 10.1016/j.yjmcc.2011.07.015] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/24/2011] [Revised: 06/20/2011] [Accepted: 07/18/2011] [Indexed: 12/30/2022]
20
Simkus R, Baronas R. Metabolic self-organization of bioluminescent Escherichia coli. LUMINESCENCE 2011;26:716-21. [PMID: 21538795 DOI: 10.1002/bio.1303] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2010] [Revised: 02/01/2011] [Accepted: 03/05/2011] [Indexed: 11/10/2022]
21
Guzun R, Karu-Varikmaa M, Gonzalez-Granillo M, Kuznetsov AV, Michel L, Cottet-Rousselle C, Saaremäe M, Kaambre T, Metsis M, Grimm M, Auffray C, Saks V. Mitochondria-cytoskeleton interaction: distribution of β-tubulins in cardiomyocytes and HL-1 cells. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2011;1807:458-69. [PMID: 21296049 DOI: 10.1016/j.bbabio.2011.01.010] [Citation(s) in RCA: 62] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2010] [Revised: 01/13/2011] [Accepted: 01/31/2011] [Indexed: 01/23/2023]
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