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Chen JR, Aguirre-Carvajal K, Xue DY, Chang HC, Arone-Maxwell L, Lin YP, Armijos-Jaramillo V, Oliva R. Exploring the genetic makeup of Xanthomonas species causing bacterial spot in Taiwan: evidence of population shift and local adaptation. Front Microbiol 2024; 15:1408885. [PMID: 38846563 PMCID: PMC11153759 DOI: 10.3389/fmicb.2024.1408885] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2024] [Accepted: 05/13/2024] [Indexed: 06/09/2024] Open
Abstract
The introduction of plant pathogens can quickly reshape disease dynamics in island agro-ecologies, representing a continuous challenge for local crop management strategies. Xanthomonas pathogens causing tomato bacterial spot were probably introduced in Taiwan several decades ago, creating a unique opportunity to study the genetic makeup and adaptive response of this alien population. We examined the phenotypic and genotypic identity of 669 pathogen entries collected across different regions of Taiwan in the last three decades. The analysis detected a major population shift, where X. euvesicatoria and X. vesicatoria races T1 and T2 were replaced by new races of X. perforans. After its introduction, race T4 quickly became dominant in all tomato-growing areas of the island. The genomic analysis of 317 global genomes indicates that the Xanthomonas population in Taiwan has a narrow genetic background, most likely resulting from a small number of colonization events. However, despite the apparent genetic uniformity, X. perforans race T4 shows multiple phenotypic responses in tomato lines. Additionally, an in-depth analysis of effector composition suggests diversification in response to local adaptation. These include unique mutations on avrXv3 which might allow the pathogen to overcome Xv3/Rx4 resistance gene. The findings underscore the dynamic evolution of a pathogen when introduced in a semi-isolated environment and provide insights into the potential management strategies for this important disease of tomato.
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Affiliation(s)
- Jaw-Rong Chen
- Safe and Sustainable Value Chain, World Vegetable Center, Shanhua, Taiwan
| | - Kevin Aguirre-Carvajal
- Research Center of Information and Communication Technologies, University of A Coruña, A Coruña, Spain
- Bio-Cheminformatics Research Group, Universidad de Las Américas, Quito, Ecuador
| | - Dao-Yuan Xue
- Seed and Seedling Management Section, Taiwan Seed Improvement and Propagation Station, Ministry of Agriculture, Taichung, Taiwan
| | - Hung-Chia Chang
- Safe and Sustainable Value Chain, World Vegetable Center, Shanhua, Taiwan
| | | | - Ya-Ping Lin
- Safe and Sustainable Value Chain, World Vegetable Center, Shanhua, Taiwan
| | - Vinicio Armijos-Jaramillo
- Bio-Cheminformatics Research Group, Universidad de Las Américas, Quito, Ecuador
- Facultad de Ingeniería y Ciencias Aplicadas, Universidad de Las Américas, Quito, Ecuador
| | - Ricardo Oliva
- Safe and Sustainable Value Chain, World Vegetable Center, Shanhua, Taiwan
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Adhikari P, Siddique MI, Louws FJ, Panthee DR. Identification of quantitative trait loci associated with bacterial spot race T4 resistance in intra-specific populations of tomato (Solanum lycopersicum L.). PLoS One 2023; 18:e0295551. [PMID: 38079392 PMCID: PMC10712892 DOI: 10.1371/journal.pone.0295551] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2023] [Accepted: 11/22/2023] [Indexed: 12/18/2023] Open
Abstract
Bacterial spot of tomato is a serious disease caused by at least four species and four races of Xanthomonas- X. euvesicatoria (race T1), X. vesicatoria (race T2), X. perforans (race T3 and T4), and X. gardneri, with X. perforans race T4 being predominant in the southeast USA. Practical management of this disease is challenging because of the need for more effective chemicals and commercially resistant cultivars. Identification of genetic resistance is the first step to developing a disease-resistant variety. The objective of this study was to identify quantitative trait loci (QTL) conferring resistance to race T4 in two independent recombinant inbred lines (RILs) populations NC 10204 (intra-specific) and NC 13666 (interspecific) developed by crossing NC 30P x NC22L-1(2008) and NC 1CELBR x PI 270443, respectively. Seven QTLs on chromosomes 2, 6, 7, 11, and 12 were identified in NC 10204. The QTL on chromosome 6 explained the highest percentage of phenotypic variance (up to 21.3%), followed by the QTL on chromosome 12 (up to 8.2%). On the other hand, the QTLs on chromosomes 1, 3, 4, 6, 7, 8, 9, and 11 were detected in NC 13666. The QTLs on chromosomes 6, 7, and 11 were co-located in NC 10204 and NC 13666 populations. The donor of the resistance associated with these QTL in NC 10204 is a released breeding line with superior horticultural traits. Therefore, both the donor parent and the QTL information will be useful in tomato breeding programs as there will be minimal linkage drag associated with the bacterial spot resistance.
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Affiliation(s)
- Pragya Adhikari
- Department of Horticultural Science, Mountain Horticultural Crops Research and Extension Center, North Carolina State University, Mills River, North Carolina, United States of America
- Bayer Crop Science, Huxley, Iowa, United States of America
| | - Muhammad Irfan Siddique
- Department of Horticultural Science, Mountain Horticultural Crops Research and Extension Center, North Carolina State University, Mills River, North Carolina, United States of America
| | - Frank J. Louws
- Department of Horticultural Science, Mountain Horticultural Crops Research and Extension Center, North Carolina State University, Mills River, North Carolina, United States of America
- Department of Horticultural Science and Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, North Carolina, United States of America
| | - Dilip R. Panthee
- Department of Horticultural Science, Mountain Horticultural Crops Research and Extension Center, North Carolina State University, Mills River, North Carolina, United States of America
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Gupta S, Pandey S, Nandi SP, Singh M. Modulation of ethylene and ROS-scavenging enzymes by multifarious plant growth-promoting endophytes in tomato (Solanum lycopersicum) plants to combat Xanthomonas -induced stress. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2023; 202:107982. [PMID: 37651951 DOI: 10.1016/j.plaphy.2023.107982] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2023] [Revised: 07/26/2023] [Accepted: 08/18/2023] [Indexed: 09/02/2023]
Abstract
The purpose of the current study was to explore root endophytes- Priestia megaterium T3 and Bacillus cereus T4 from Moringa olefiera for the suppression of leaf spot disease in tomato plants challenged with Xanthomonas vesicatoria. Both strains had plant growth-stimulating characteristics including auxin production, solubilization of inorganic phosphate and zinc complexes, and production of ammonia, siderophore, as well as hydrolytic enzymes. An agar well diffusion and fluorescence viability assay have validated the antibacterial effect of the cell-free culture supernatant of strains T3 and T4. Liquid chromatography-mass spectrometry (LC-MS) profiling has identified the secondary metabolites in the cell-free supernatant of strains T3 and T4. The bio-priming of tomato seeds with a consortium of T3 and T4 strains has significantly declined ethylene (by 0.61-fold) and hydrogen peroxide (H2O2, 0.64-fold) concentration thus, maintaining a lower content of ROS-induced malondialdehyde (MDA, 0.91-fold) as compared to control counterparts. Consequently, the leaf spot disease severity was reduced by ∼70% in consortium-treated tomato plants in contrast to their pathogen-challenged control. The consortia (T3+T4) treatment has facilitated induced systemic resistance by enhancing enzymatic activities of phenylalanine ammonia-lyase (PAL), peroxidase (PO), polyphenol oxidase (PPO), catalase (CAT), and ascorbate oxidase (AO) to detoxify the excessive Xanthomonas-induced ROS accumulation in tomato plants. Conclusively, bacterial endophytes modulate X. vesicatoria-induced ROS response and ethylene levels in tomato plants. The current findings indicate that plant growth-promoting endophytic bacterial strains hold the potential to sustainably enhance plant growth and suppress bacterial leaf spot disease in tomato plants.
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Affiliation(s)
- Shikha Gupta
- Amity Institute of Organic Agriculture, Amity University Uttar Pradesh, Sector 125, Noida, Uttar Pradesh, 201313, India
| | - Sangeeta Pandey
- Amity Institute of Organic Agriculture, Amity University Uttar Pradesh, Sector 125, Noida, Uttar Pradesh, 201313, India.
| | - Shoma Paul Nandi
- Amity Institute of Biotechnology, Amity University Uttar Pradesh, Sector 125, Noida, Uttar Pradesh, 201313, India
| | - Monika Singh
- G.L. Bajaj Institute of Technology and Management, Greater Noida, G.B Nagar, Uttar Pradesh, 201306, India
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de Sousa DM, Janssen L, Rosa RB, Belmok A, Yamada JK, Corrêa RFT, de Souza Andrade M, Inoue-Nagata AK, Ribeiro BM, de Carvalho Pontes N. Isolation, characterization, and evaluation of putative new bacteriophages for controlling bacterial spot on tomato in Brazil. Arch Virol 2023; 168:222. [PMID: 37548749 DOI: 10.1007/s00705-023-05846-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2023] [Accepted: 07/07/2023] [Indexed: 08/08/2023]
Abstract
Bacterial spot is a highly damaging tomato disease caused by members of several species of the genus Xanthomonas. Bacteriophages have been studied for their potential use in the biological control of bacterial diseases. In the current study, bacteriophages were obtained from soil and tomato leaves in commercial fields in Brazil with the aim of obtaining biological control agents against bacterial spot. Phage isolation was carried out by co-cultivation with isolates of Xanthomonas euvesicatoria pv. perforans, which was prevalent in the collection areas. In a host range evaluation, none of the phage isolates was able to induce a lytic cycle in all of the bacterial isolates tested. In in vivo tests, treatment of susceptible bacterial isolates with the corresponding phage prior to application to tomato plants led to a reduction in the severity of the resulting disease. The level of disease control provided by phage application was equal to or greater than that achieved using copper hydroxide. Electron microscopy analysis showed that all of the phages had similar morphology, with head and tail structures similar to those of viruses belonging to the class Caudoviricetes. The presence of short, non-contractile tubular tails strongly suggested that these phages belong to the family Autographiviridae. This was confirmed by phylogenetic analysis, which further revealed that they all belong to the genus Pradovirus. The phages described here are closely related to each other and potentially belong to a new species within the genus. These phages will be evaluated in future studies against other tomato xanthomonad strains to assess their potential as biological control agents.
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Affiliation(s)
- Dayane Maria de Sousa
- Programa de Pós-Graduação em Olericultura, Instituto Federal Goiano (IF Goiano), Morrinhos, GO, Brazil
| | - Luis Janssen
- Laboratory of Baculovirus, Cell Biology Department, University of Brasília (UnB), Campus Universitário Darcy Ribeiro, Brasília, DF, Brazil
| | - Raphael Barboza Rosa
- Programa de Pós-Graduação em Olericultura, Instituto Federal Goiano (IF Goiano), Morrinhos, GO, Brazil
| | - Aline Belmok
- Laboratory of Baculovirus, Cell Biology Department, University of Brasília (UnB), Campus Universitário Darcy Ribeiro, Brasília, DF, Brazil
| | - Jaqueline Kiyomi Yamada
- Programa de Pós-Graduação em Olericultura, Instituto Federal Goiano (IF Goiano), Morrinhos, GO, Brazil
| | - Roberto Franco Teixeira Corrêa
- Laboratory of Baculovirus, Cell Biology Department, University of Brasília (UnB), Campus Universitário Darcy Ribeiro, Brasília, DF, Brazil
| | - Miguel de Souza Andrade
- Laboratory of Baculovirus, Cell Biology Department, University of Brasília (UnB), Campus Universitário Darcy Ribeiro, Brasília, DF, Brazil
| | | | - Bergmann Morais Ribeiro
- Laboratory of Baculovirus, Cell Biology Department, University of Brasília (UnB), Campus Universitário Darcy Ribeiro, Brasília, DF, Brazil
| | - Nadson de Carvalho Pontes
- Programa de Pós-Graduação em Olericultura, Instituto Federal Goiano (IF Goiano), Morrinhos, GO, Brazil.
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Zhao J, Yuan Z, Han X, Bao T, Yang T, Liu Z, Liu H. The Carbonic Anhydrase βCA1 Functions in PopW-Mediated Plant Defense Responses in Tomato. Int J Mol Sci 2023; 24:11021. [PMID: 37446199 DOI: 10.3390/ijms241311021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2023] [Revised: 06/26/2023] [Accepted: 06/29/2023] [Indexed: 07/15/2023] Open
Abstract
β-Carbonic anhydrase (βCA) is very important for plant growth and development, but its function in immunity has also been examined. In this study, we found that the expression level of Solanum lycopersicum βCA1 (SlβCA1) was significantly upregulated in plants treated with Xanthomonas euvesicatoria 85-10. The protein was localized in the nucleus, cell membrane and chloroplast. Using tomato plants silenced with SlβCA1, we demonstrated that SlβCA1 plays an active role in plant disease resistance. Moreover, we found that the elicitor PopW upregulated the expression of SlβCA1, while the microbe-associated molecular pattern response induced by PopW was inhibited in TRV-SlβCA1. The interaction between PopW and SlβCA1 was confirmed. Here, we found that SlβCA1 was positively regulated during PopW-induced resistance to Xanthomonas euvesicatoria 85-10. These data indicate the importance of SlβCA1 in plant basic immunity and its recognition by the Harpin protein PopW as a new target for elicitor recognition.
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Affiliation(s)
- Jieru Zhao
- Department of Plant Pathology, College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, China
| | - Zhixiang Yuan
- Department of Plant Pathology, College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, China
| | - Xixi Han
- Department of Plant Pathology, College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, China
| | - Tingting Bao
- Department of Plant Pathology, College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, China
| | - Tingmi Yang
- Guangxi Academy of Specialty Crops, Guilin 541004, China
| | - Zhuang Liu
- Department of Plant Pathology, College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, China
| | - Hongxia Liu
- Department of Plant Pathology, College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, China
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Giri VP, Pandey S, Srivastava S, Shukla P, Kumar N, Kumari M, Katiyar R, Singh S, Mishra A. Chitosan fabricated biogenic silver nanoparticles (Ch@BSNP) protectively modulate the defense mechanism of tomato during bacterial leaf spot (BLS) disease. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2023; 197:107637. [PMID: 36933507 DOI: 10.1016/j.plaphy.2023.03.014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2022] [Revised: 02/26/2023] [Accepted: 03/07/2023] [Indexed: 06/18/2023]
Abstract
Herein, the impact of chitosan fabricated biogenic silver nanoparticles (Ch@BSNP) has been evaluated for the protective management of bacterial leaf spot (BLS) disease in tomatoes caused by Xanthomonas campestris (NCIM5028). The Ch@BSNP originated by the Trichoderma viride (MTCC5661) derived extracellular compounds and subsequent chitosan hybridization. Spherical-shaped Ch@BSNP (30-35 nm) treated diseased plants were able to combat the biotic stress, as evidenced by the decreased elevated response of stress markers viz; anthocyanin (34.02%), proline (45.00%), flavonoids (20.26%), lipid peroxidation (10.00%), guaiacol peroxidase (36.58%), ascorbate peroxidase (41.50%), polyphenol oxidase (25.34%) and phenylalanine ammonia-lyase (2.10 fold) as compared to untreated diseased plants. Increased biochemical content specifically sugar (15.43%), phenolics (49.10%), chlorophyll, and carotenoids were measured in Ch@BSNP-treated diseased plants compared to untreated X. campestris-infested plants. The Ch@BSNP considerably reduced stress by increasing net photosynthetic rate and water use efficiency along with decreased transpiration rate and stomatal conductance in comparison to infected plants. Additionally, the expression of defense-regulatory genes viz; growth responsive (AUX, GH3, SAUR), early defense responsive (WRKYTF22, WRKY33, NOS1), defense responsive (PR1, NHO1, NPR1), hypersensitivity responsive (Pti, RbohD, OXI1) and stress hormones responsive (MYC2, JAR1, ERF1) were found to be upregulated in diseased plants while being significantly downregulated in Ch@BSNP-treated diseased plants. Furthermore, fruits obtained from pathogen-compromised plants treated with Ch@BSNP had higher levels of health-promoting compounds including lycopene and beta-carotene than infected plant fruits. This nano-enabled and environmentally safer crop protection strategy may encourage a sustainable agri-system towards the world's growing food demand and promote food security.
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Affiliation(s)
- Ved Prakash Giri
- Division of Microbial Technology, CSIR- National Botanical Research Institute, Lucknow, 226001, India; Department of Botany, Lucknow University, Hasanganj, Lucknow, 226007, India
| | - Shipra Pandey
- Division of Microbial Technology, CSIR- National Botanical Research Institute, Lucknow, 226001, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Sonal Srivastava
- Division of Microbial Technology, CSIR- National Botanical Research Institute, Lucknow, 226001, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Pallavi Shukla
- Division of Microbial Technology, CSIR- National Botanical Research Institute, Lucknow, 226001, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Navinit Kumar
- Division of Microbial Technology, CSIR- National Botanical Research Institute, Lucknow, 226001, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Madhuree Kumari
- Division of Microbial Technology, CSIR- National Botanical Research Institute, Lucknow, 226001, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India; Department of Biochemistry, Indian Institute of Science, Bengaluru, 560012, India
| | - Ratna Katiyar
- Department of Botany, Lucknow University, Hasanganj, Lucknow, 226007, India
| | - Shiv Singh
- Industrial Waste Utilization, Nano and Biomaterial Division, CSIR-Advanced Materials and Processes Research Institute, Bhopal, 462026, India
| | - Aradhana Mishra
- Division of Microbial Technology, CSIR- National Botanical Research Institute, Lucknow, 226001, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India.
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A Pan-Global Study of Bacterial Leaf Spot of Chilli Caused by Xanthomonas spp. PLANTS 2022; 11:plants11172291. [PMID: 36079673 PMCID: PMC9460788 DOI: 10.3390/plants11172291] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/24/2022] [Revised: 08/22/2022] [Accepted: 08/26/2022] [Indexed: 11/17/2022]
Abstract
Bacterial Leaf Spot (BLS) is a serious bacterial disease of chilli (Capsicum spp.) caused by at least four different Xanthomonas biotypes: X. euvesicatoria pv. euvesicatoria, X. euvesicatoria pv. perforans, X. hortorum pv. gardneri, and X. vesicatoria. Symptoms include black lesions and yellow halos on the leaves and fruits, resulting in reports of up to 66% losses due to unsalable and damaged fruits. BLS pathogens are widely distributed in tropical and subtropical regions. Xanthomonas is able to survive in seeds and crop residues for short periods, leading to the infections in subsequent crops. The pathogen can be detected using several techniques, but largely via a combination of traditional and molecular approaches. Conventional detection is based on microscopic and culture observations, while a suite of Polymerase Chain Reaction (PCR) and Loop-Mediated Isothermal Amplification (LAMP) assays are available. Management of BLS is challenging due to the broad genetic diversity of the pathogens, a lack of resilient host resistance, and poor efficacy of chemical control. Some biological control agents have been reported, including bacteriophage deployment. Incorporating stable host resistance is a critical component in ongoing integrated management for BLS. This paper reviews the current status of BLS of chilli, including its distribution, pathogen profiles, diagnostic options, disease management, and the pursuit of plant resistance.
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Next-Generation Sequencing of Local Romanian Tomato Varieties and Bioinformatics Analysis of the Ve Locus. Int J Mol Sci 2022; 23:ijms23179750. [PMID: 36077147 PMCID: PMC9456471 DOI: 10.3390/ijms23179750] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2022] [Revised: 08/23/2022] [Accepted: 08/25/2022] [Indexed: 01/17/2023] Open
Abstract
Genetic variability is extremely important, not only for the species’ adaptation to environmental challenges, but also for the creation of novel varieties through plant breeding. Tomato is an important vegetable crop, as well as a model species in numerous genomic studies. Its genome was fully sequenced in 2012 for the ‘Heinz 1706’ variety, and since then, resequencing efforts have revealed genetic variability data that can be used for multiple purposes, including triggering mechanisms of biotic and abiotic stress resistance. The present study focused on the analysis of the genome variation for eight Romanian local tomato varieties using next-generation sequencing technique, and as a case study, the sequence analysis of the Ve1 and Ve2 loci, to determine which genotypes might be good candidates for future breeding of tomato varieties resistant to Verticillium species. The analysis of the Ve locus identified several genotypes that could be donors of the Ve1 gene conferring resistance to Verticillium race 1. Sequencing for the first time Romanian genotypes enriched the existing data on various world tomato genetic resources, but also opened the way for the molecular breeding in Romania. Plant breeders can use these data to create novel tomato varieties adapted to the ever-changing environment.
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Xia F, Xie X, Wang Z, Jin S, Yan K, Ji Z. A Novel Computational Framework for Precision Diagnosis and Subtype Discovery of Plant With Lesion. FRONTIERS IN PLANT SCIENCE 2022; 12:789630. [PMID: 35046977 PMCID: PMC8761810 DOI: 10.3389/fpls.2021.789630] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/05/2021] [Accepted: 11/03/2021] [Indexed: 05/14/2023]
Abstract
Plants are often attacked by various pathogens during their growth, which may cause environmental pollution, food shortages, or economic losses in a certain area. Integration of high throughput phenomics data and computer vision (CV) provides a great opportunity to realize plant disease diagnosis in the early stage and uncover the subtype or stage patterns in the disease progression. In this study, we proposed a novel computational framework for plant disease identification and subtype discovery through a deep-embedding image-clustering strategy, Weighted Distance Metric and the t-stochastic neighbor embedding algorithm (WDM-tSNE). To verify the effectiveness, we applied our method on four public datasets of images. The results demonstrated that the newly developed tool is capable of identifying the plant disease and further uncover the underlying subtypes associated with pathogenic resistance. In summary, the current framework provides great clustering performance for the root or leave images of diseased plants with pronounced disease spots or symptoms.
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Affiliation(s)
- Fei Xia
- College of Artificial Intelligence, Nanjing Agricultural University, Nanjing, China
| | - Xiaojun Xie
- College of Artificial Intelligence, Nanjing Agricultural University, Nanjing, China
- Center for Data Science and Intelligent Computing, Nanjing Agricultural University, Nanjing, China
| | - Zongqin Wang
- College of Artificial Intelligence, Nanjing Agricultural University, Nanjing, China
| | - Shichao Jin
- Plant Phenomics Research Centre, Academy for Advanced Interdisciplinary Studies, Regional Technique Innovation Center for Wheat Production, Key Laboratory of Crop Physiology and Ecology in Southern China, Ministry of Agriculture, Nanjing Agricultural University, Nanjing, China
- Collaborative Innovation Centre for Modern Crop Production co-sponsored by Province and Ministry, Jiangsu Key Laboratory for Information Agriculture, Nanjing Agricultural University, Nanjing, China
| | - Ke Yan
- Department of Building, School of Design and Environment, National University of Singapore, Singapore, Singapore
| | - Zhiwei Ji
- College of Artificial Intelligence, Nanjing Agricultural University, Nanjing, China
- Center for Data Science and Intelligent Computing, Nanjing Agricultural University, Nanjing, China
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Liu X, Meng G, Wang M, Qian Z, Zhang Y, Yang W. Tomato SlPUB24 enhances resistance to Xanthomonas euvesicatoria pv. perforans race T3. HORTICULTURE RESEARCH 2021; 8:30. [PMID: 33518716 PMCID: PMC7848003 DOI: 10.1038/s41438-021-00468-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2020] [Revised: 12/02/2020] [Accepted: 12/03/2020] [Indexed: 05/04/2023]
Abstract
Solanum lycopersicum var. cerasiforme accession PI 114490 has broad-spectrum resistance to bacterial spot caused by several species of Xanthomonas. Resistance is quantitatively inherited, and a common quantitative trait locus QTL-11B on chromosome 11 has been identified previously. In this study, the SlPub24 gene was characterized in QTL-11B. SlPub24 in PI 114490 was upregulated by infection with X. euvesicatoria pv. perforans race T3, but its transcription was low in the susceptible line OH 88119 whether or not it was infected by the pathogen. The differential expression of SlPub24 between PI 114490 and OH 88119 was due to great sequence variation in the promoter region. The promoter of SlPub24 in OH 88119 had very low activity and did not respond to pathogen infection. Transgenic lines of OH 88119 overexpressing SlPub24 isolated from PI 114490 showed significantly enhanced resistance, while mutants of Slpub24 generated by CRISPR/Cas9 editing showed more susceptibility to race T3 and to other races. The mutants also showed spontaneous cell death in leaves. The expression of the salicylic acid (SA) pathway gene phenylalanine ammonia-lyase (PAL) and signaling-related genes pathogenesis-related (PR1) and nonexpresser of PR1 (NPR1) were influenced by SlPub24. The content of SA in tomato plants was consistent with the level of SlPub24 expression. Furthermore, SlPUB24 interacted with the cell wall protein SlCWP and could regulate the degradation of SlCWP. The expression levels of SlCWP and SlCWINV1, a cell wall invertase gene, showed opposite patterns during pathogen infection. The activity of SlCWINV1 was lower in mutants than in PI 114490. The results are discussed in terms of the roles of the abovementioned genes, and a potential model for SlPUB24-mediated resistance to bacterial spot is proposed.
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Affiliation(s)
- Xin Liu
- Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, Department of Vegetable Science, China Agricultural University, Beijing, 100193, China
- Joint Laboratory for International Cooperation in Crop Molecular Breeding, Ministry of Education of the People's Republic of China, Beijing, 100193, China
| | - Ge Meng
- Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, Department of Vegetable Science, China Agricultural University, Beijing, 100193, China
- Joint Laboratory for International Cooperation in Crop Molecular Breeding, Ministry of Education of the People's Republic of China, Beijing, 100193, China
| | - Mengrui Wang
- Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, Department of Vegetable Science, China Agricultural University, Beijing, 100193, China
- Joint Laboratory for International Cooperation in Crop Molecular Breeding, Ministry of Education of the People's Republic of China, Beijing, 100193, China
| | - Zilin Qian
- Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, Department of Vegetable Science, China Agricultural University, Beijing, 100193, China
- Joint Laboratory for International Cooperation in Crop Molecular Breeding, Ministry of Education of the People's Republic of China, Beijing, 100193, China
| | - Yaxian Zhang
- Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, Department of Vegetable Science, China Agricultural University, Beijing, 100193, China
- Joint Laboratory for International Cooperation in Crop Molecular Breeding, Ministry of Education of the People's Republic of China, Beijing, 100193, China
| | - Wencai Yang
- Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, Department of Vegetable Science, China Agricultural University, Beijing, 100193, China.
- Joint Laboratory for International Cooperation in Crop Molecular Breeding, Ministry of Education of the People's Republic of China, Beijing, 100193, China.
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