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Kovács D, Biró JB, Ahmed S, Kovács M, Sigmond T, Hotzi B, Varga M, Vincze VV, Mohammad U, Vellai T, Barna J. Age-dependent heat shock hormesis to HSF-1 deficiency suggests a compensatory mechanism mediated by the unfolded protein response and innate immunity in young Caenorhabditis elegans. Aging Cell 2024:e14246. [PMID: 38895933 DOI: 10.1111/acel.14246] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2023] [Revised: 05/31/2024] [Accepted: 06/04/2024] [Indexed: 06/21/2024] Open
Abstract
The transcription factor HSF-1 (heat shock factor 1) acts as a master regulator of heat shock response in eukaryotic cells to maintain cellular proteostasis. The protein has a protective role in preventing cells from undergoing ageing, and neurodegeneration, and also mediates tumorigenesis. Thus, modulating HSF-1 activity in humans has a promising therapeutic potential for treating these pathologies. Loss of HSF-1 function is usually associated with impaired stress tolerance. Contrary to this conventional knowledge, we show here that inactivation of HSF-1 in the nematode Caenorhabditis elegans results in increased thermotolerance at young adult stages, whereas HSF-1 deficiency in animals passing early adult stages indeed leads to decreased thermotolerance, as compared to wild-type. Furthermore, a gene expression analysis supports that in young adults, distinct cellular stress response and immunity-related signaling pathways become induced upon HSF-1 deficiency. We also demonstrate that increased tolerance to proteotoxic stress in HSF-1-depleted young worms requires the activity of the unfolded protein response of the endoplasmic reticulum and the SKN-1/Nrf2-mediated oxidative stress response pathway, as well as an innate immunity-related pathway, suggesting a mutual compensatory interaction between HSF-1 and these conserved stress response systems. A similar compensatory molecular network is likely to also operate in higher animal taxa, raising the possibility of an unexpected outcome when HSF-1 activity is manipulated in humans.
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Affiliation(s)
- Dániel Kovács
- Department of Genetics, ELTE Eötvös Loránd University, Budapest, Hungary
| | | | - Saqib Ahmed
- Department of Genetics, ELTE Eötvös Loránd University, Budapest, Hungary
| | - Márton Kovács
- Department of Genetics, ELTE Eötvös Loránd University, Budapest, Hungary
| | - Tímea Sigmond
- Department of Genetics, ELTE Eötvös Loránd University, Budapest, Hungary
| | - Bernadette Hotzi
- Department of Genetics, ELTE Eötvös Loránd University, Budapest, Hungary
| | - Máté Varga
- Department of Genetics, ELTE Eötvös Loránd University, Budapest, Hungary
| | | | - Umar Mohammad
- Department of Genetics, ELTE Eötvös Loránd University, Budapest, Hungary
| | - Tibor Vellai
- Department of Genetics, ELTE Eötvös Loránd University, Budapest, Hungary
- HUN-REN-ELTE Genetics Research Group, Eötvös Loránd University, Budapest, Hungary
| | - János Barna
- Department of Genetics, ELTE Eötvös Loránd University, Budapest, Hungary
- HUN-REN-ELTE Genetics Research Group, Eötvös Loránd University, Budapest, Hungary
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Zhang Z, Li J, Li F, Wang T, Luo X, Li B, You Y, Wu C, Liu X. Jujubae Fructus extract prolongs lifespan and improves stress tolerance in Caenorhabditis elegans dependent on DAF-16/SOD-3. Sci Rep 2024; 14:13713. [PMID: 38877105 PMCID: PMC11178930 DOI: 10.1038/s41598-024-64045-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2024] [Accepted: 06/04/2024] [Indexed: 06/16/2024] Open
Abstract
Jujubae Fructus, the fruit of Ziziphus jujuba Mill has been used as one of the medicine food homology species for thousands of years in China. Studies have shown that the active ingredients of Jujubae Fructus have a variety of biological effects, but its role in the aging process still lacks knowledge. Here, we investigated the effect of Jujubae Fructus extract (JE) on Caenorhabditis elegans lifespan and its potential mechanism. The lifespan of C. elegans treated with JE was signifificantly increased in a dose-dependent manner. In addition, JE treatment prolonged the reproductive period and increased normal activity during aging in C. elegans. Similarly, JE supplementation also enhanced the resistance to heat and oxidative stress in C. elegans. Furthermore, the mutant worms' lifespan assays demonstrated that JE requires daf-16 to prolong lifespan. DAF-16::GFP analysis of TJ356 showed that JE treatment translocates DAF-16::GFP to nucleus in transgenic worms. By analyzing the downstream of daf-16, we identify that JE may regulate sod3 downstream of daf-16. Mutant worms' lifespan and transgenic reporter gene expression assays revealed that increasing SOD-3 expression was critical for extending longevity in C. elegans with JE therapy. Collectively, these data indicate that JE may have an important role in C. elegans longevity that is dependent on DAF-16 and SOD-3.
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Affiliation(s)
- Zhi Zhang
- Department of Nutrition and Food Hygiene, College of Public Health, Xinxiang Medical University, 601 Jinsui Avenue, Xinxiang City, Henan Province, China
- Key Laboratory of Animal Ecology and Conservation Biology, Institute of Zoology, Chinese Academy of Sciences, Beijing, China
| | - Jiajia Li
- Institute of Translational Medicine, Zhoukou Normal University, No.6, Middle Wenchang Avenue, Chuanhui District, Zhoukou, China
| | - Feng Li
- Department of Nutrition and Food Hygiene, College of Public Health, Xinxiang Medical University, 601 Jinsui Avenue, Xinxiang City, Henan Province, China
- Institute of Translational Medicine, Zhoukou Normal University, No.6, Middle Wenchang Avenue, Chuanhui District, Zhoukou, China
| | - Tao Wang
- Institute of Translational Medicine, Zhoukou Normal University, No.6, Middle Wenchang Avenue, Chuanhui District, Zhoukou, China
| | - Xiaoyan Luo
- Department of Nutrition and Food Hygiene, College of Public Health, Xinxiang Medical University, 601 Jinsui Avenue, Xinxiang City, Henan Province, China
| | - Bing Li
- Institute of Translational Medicine, Zhoukou Normal University, No.6, Middle Wenchang Avenue, Chuanhui District, Zhoukou, China
| | - Yilin You
- College of Food Science and Nutritional Engineering, Beijing Key Laboratory of Viticulture and Enology, China Agricultural University, Beijing, China
| | - Changjing Wu
- Institute of Translational Medicine, Zhoukou Normal University, No.6, Middle Wenchang Avenue, Chuanhui District, Zhoukou, China.
| | - Xiaomeng Liu
- Department of Nutrition and Food Hygiene, College of Public Health, Xinxiang Medical University, 601 Jinsui Avenue, Xinxiang City, Henan Province, China.
- Institute of Translational Medicine, Zhoukou Normal University, No.6, Middle Wenchang Avenue, Chuanhui District, Zhoukou, China.
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Bardan Sarmiento M, Gang SS, van Oosten-Hawle P, Troemel ER. CUL-6/cullin ubiquitin ligase-mediated degradation of HSP-90 by intestinal lysosomes promotes thermotolerance. Cell Rep 2024; 43:114279. [PMID: 38795346 DOI: 10.1016/j.celrep.2024.114279] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2023] [Revised: 04/10/2024] [Accepted: 05/10/2024] [Indexed: 05/27/2024] Open
Abstract
Heat shock can be a lethal stressor. Previously, we described a CUL-6/cullin-ring ubiquitin ligase complex in the nematode Caenorhabditis elegans that is induced by intracellular intestinal infection and proteotoxic stress and that promotes improved survival upon heat shock (thermotolerance). Here, we show that CUL-6 promotes thermotolerance by targeting the heat shock protein HSP-90 for degradation. We show that CUL-6-mediated lowering of HSP-90 protein levels, specifically in the intestine, improves thermotolerance. Furthermore, we show that lysosomal function is required for CUL-6-mediated promotion of thermotolerance and that CUL-6 directs HSP-90 to lysosome-related organelles upon heat shock. Altogether, these results indicate that a CUL-6 ubiquitin ligase promotes organismal survival upon heat shock by promoting HSP-90 degradation in intestinal lysosomes. Thus, HSP-90, a protein commonly associated with protection against heat shock and promoting degradation of other proteins, is itself degraded to protect against heat shock.
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Affiliation(s)
| | - Spencer S Gang
- School of Biological Sciences, University of California, San Diego, La Jolla, CA, USA
| | | | - Emily R Troemel
- School of Biological Sciences, University of California, San Diego, La Jolla, CA, USA.
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4
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Banse SA, Jackson EG, Sedore CA, Onken B, Hall D, Coleman-Hulbert A, Huynh P, Garrett T, Johnson E, Harinath G, Inman D, Guo S, Morshead M, Xue J, Falkowski R, Chen E, Herrera C, Kirsch AJ, Perez VI, Guo M, Lithgow GJ, Driscoll M, Phillips PC. The coupling between healthspan and lifespan in Caenorhabditis depends on complex interactions between compound intervention and genetic background. Aging (Albany NY) 2024; 16:5829-5855. [PMID: 38613792 PMCID: PMC11042945 DOI: 10.18632/aging.205743] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2023] [Accepted: 01/11/2024] [Indexed: 04/15/2024]
Abstract
Aging is characterized by declining health that results in decreased cellular resilience and neuromuscular function. The relationship between lifespan and health, and the influence of genetic background on that relationship, has important implications in the development of pharmacological anti-aging interventions. Here we assessed swimming performance as well as survival under thermal and oxidative stress across a nematode genetic diversity test panel to evaluate health effects for three compounds previously studied in the Caenorhabditis Intervention Testing Program and thought to promote longevity in different ways - NP1 (nitrophenyl piperazine-containing compound 1), propyl gallate, and resveratrol. Overall, we find the relationships among median lifespan, oxidative stress resistance, thermotolerance, and mobility vigor to be complex. We show that oxidative stress resistance and thermotolerance vary with compound intervention, genetic background, and age. The effects of tested compounds on swimming locomotion, in contrast, are largely species-specific. In this study, thermotolerance, but not oxidative stress or swimming ability, correlates with lifespan. Notably, some compounds exert strong impact on some health measures without an equally strong impact on lifespan. Our results demonstrate the importance of assessing health and lifespan across genetic backgrounds in the effort to identify reproducible anti-aging interventions, with data underscoring how personalized treatments might be required to optimize health benefits.
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Affiliation(s)
- Stephen A. Banse
- Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403, USA
| | - E. Grace Jackson
- Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403, USA
| | - Christine A. Sedore
- Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403, USA
| | - Brian Onken
- Department of Molecular Biology and Biochemistry, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA
| | - David Hall
- The Buck Institute for Research on Aging, Novato, CA 94945, USA
| | | | - Phu Huynh
- Department of Molecular Biology and Biochemistry, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA
| | - Theo Garrett
- The Buck Institute for Research on Aging, Novato, CA 94945, USA
| | - Erik Johnson
- Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403, USA
| | - Girish Harinath
- Department of Molecular Biology and Biochemistry, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA
| | - Delaney Inman
- The Buck Institute for Research on Aging, Novato, CA 94945, USA
| | - Suzhen Guo
- Department of Molecular Biology and Biochemistry, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA
| | | | - Jian Xue
- Department of Molecular Biology and Biochemistry, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA
| | - Ron Falkowski
- Department of Molecular Biology and Biochemistry, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA
| | - Esteban Chen
- Department of Molecular Biology and Biochemistry, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA
| | - Christopher Herrera
- Department of Molecular Biology and Biochemistry, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA
| | - Allie J. Kirsch
- Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403, USA
| | - Viviana I. Perez
- Division of Aging Biology, National Institute on Aging, Bethesda, MD 20892, USA
| | - Max Guo
- Division of Aging Biology, National Institute on Aging, Bethesda, MD 20892, USA
| | | | - Monica Driscoll
- Department of Molecular Biology and Biochemistry, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA
| | - Patrick C. Phillips
- Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403, USA
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5
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Ma QW, Han RT, Wu ZJ, Zhou JJ, Chen MT, Zhang XZ, Ma WZ, Feng N. Melatonin derivative 6a as a PARP-1 inhibitor for the treatment of Parkinson's disease. Front Pharmacol 2024; 15:1363212. [PMID: 38476326 PMCID: PMC10927953 DOI: 10.3389/fphar.2024.1363212] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2023] [Accepted: 02/12/2024] [Indexed: 03/14/2024] Open
Abstract
Both continuous oxidative stress and poly (ADP-ribose) polymerase 1 (PARP-1) activation occur in neurodegenerative diseases such as Parkinson's disease. PARP-1 inhibition can reverse mitochondrial damage and has a neuroprotective effect. In a previous study, we synthesized melatonin derivative 6a (MD6a) and reported that it has excellent antioxidant activity and significantly reduces α-synuclein aggregation in Caenorhabditis elegans; however, the underlying mechanism is largely unknown. In the present study, we revealed that MD6a is a potential PARP-1 inhibitor, leading to mammalian targe of rapamycin/heat shock factor 1 signaling downregulation and reducing heat shock protein 4 and 6 expression, thus helping to maintain protein homeostasis and improve mitochondrial function. Together, these findings suggest that MD6a might be a viable candidate for the prevention and treatment of Parkinson's disease.
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Affiliation(s)
- Qing-Wei Ma
- School of Pharmacy and Food Engineering, Wuyi University, Jiangmen, China
| | - Rui-Ting Han
- School of Pharmacy and Food Engineering, Wuyi University, Jiangmen, China
| | - Zi-Jie Wu
- School of Pharmacy and Food Engineering, Wuyi University, Jiangmen, China
| | - Jun-Jie Zhou
- School of Pharmacy and Food Engineering, Wuyi University, Jiangmen, China
| | - Meng-Ting Chen
- School of Pharmacy and Food Engineering, Wuyi University, Jiangmen, China
| | - Xiang-Zhi Zhang
- School of Pharmacy and Food Engineering, Wuyi University, Jiangmen, China
| | - Wen-Zhe Ma
- State Key Laboratory of Quality Research in Chinese Medicine, Macau University of Science and Technology, Macao, China
| | - Na Feng
- School of Pharmacy and Food Engineering, Wuyi University, Jiangmen, China
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Taouktsi E, Kyriakou E, Voulgaraki E, Verganelakis D, Krokou S, Rigas S, Voutsinas GE, Syntichaki P. Mitochondrial p38 Mitogen-Activated Protein Kinase: Insights into Its Regulation of and Role in LONP1-Deficient Nematodes. Int J Mol Sci 2023; 24:17209. [PMID: 38139038 PMCID: PMC10743222 DOI: 10.3390/ijms242417209] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2023] [Revised: 11/30/2023] [Accepted: 12/05/2023] [Indexed: 12/24/2023] Open
Abstract
p38 Mitogen-Activated Protein Kinase (MAPK) cascades are central regulators of numerous physiological cellular processes, including stress response signaling. In C. elegans, mitochondrial dysfunction activates a PMK-3/p38 MAPK signaling pathway (MAPKmt), but its functional role still remains elusive. Here, we demonstrate the induction of MAPKmt in worms deficient in the lonp-1 gene, which encodes the worm ortholog of mammalian mitochondrial LonP1. This induction is subjected to negative regulation by the ATFS-1 transcription factor through the CREB-binding protein (CBP) ortholog CBP-3, indicating an interplay between both activated MAPKmt and mitochondrial Unfolded Protein Response (UPRmt) surveillance pathways. Our results also reveal a genetic interaction in lonp-1 mutants between PMK-3 kinase and the ZIP-2 transcription factor. ZIP-2 has an established role in innate immunity but can also modulate the lifespan by maintaining mitochondrial homeostasis during ageing. We show that in lonp-1 animals, ZIP-2 is activated in a PMK-3-dependent manner but does not confer increased survival to pathogenic bacteria. However, deletion of zip-2 or pmk-3 shortens the lifespan of lonp-1 mutants, suggesting a possible crosstalk under conditions of mitochondrial perturbation that influences the ageing process. Furthermore, loss of pmk-3 specifically diminished the extreme heat tolerance of lonp-1 worms, highlighting the crucial role of PMK-3 in the heat shock response upon mitochondrial LONP-1 inactivation.
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Affiliation(s)
- Eirini Taouktsi
- Laboratory of Molecular Genetics of Aging, Biomedical Research Foundation of the Academy of Athens, Center of Basic Research, 11527 Athens, Greece; (E.T.); (E.K.); (E.V.); (D.V.); (S.K.)
- Department of Biotechnology, Agricultural University of Athens, 11855 Athens, Greece;
| | - Eleni Kyriakou
- Laboratory of Molecular Genetics of Aging, Biomedical Research Foundation of the Academy of Athens, Center of Basic Research, 11527 Athens, Greece; (E.T.); (E.K.); (E.V.); (D.V.); (S.K.)
| | - Evangelia Voulgaraki
- Laboratory of Molecular Genetics of Aging, Biomedical Research Foundation of the Academy of Athens, Center of Basic Research, 11527 Athens, Greece; (E.T.); (E.K.); (E.V.); (D.V.); (S.K.)
| | - Dimitris Verganelakis
- Laboratory of Molecular Genetics of Aging, Biomedical Research Foundation of the Academy of Athens, Center of Basic Research, 11527 Athens, Greece; (E.T.); (E.K.); (E.V.); (D.V.); (S.K.)
- Department of Biological Applications & Technology, University of Ioannina, 45500 Ioannina, Greece
| | - Stefania Krokou
- Laboratory of Molecular Genetics of Aging, Biomedical Research Foundation of the Academy of Athens, Center of Basic Research, 11527 Athens, Greece; (E.T.); (E.K.); (E.V.); (D.V.); (S.K.)
| | - Stamatis Rigas
- Department of Biotechnology, Agricultural University of Athens, 11855 Athens, Greece;
| | - Gerassimos E. Voutsinas
- Laboratory of Molecular Carcinogenesis and Rare Disease Genetics, Institute of Biosciences and Applications, National Center for Scientific Research “Demokritos”, Aghia Paraskevi Attikis, 15341 Athens, Greece;
| | - Popi Syntichaki
- Laboratory of Molecular Genetics of Aging, Biomedical Research Foundation of the Academy of Athens, Center of Basic Research, 11527 Athens, Greece; (E.T.); (E.K.); (E.V.); (D.V.); (S.K.)
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7
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Mercado-Sáenz S, González-Vidal A, Burgos-Molina AM, López-Díaz B, Sendra-Portero F, Ruiz-Gómez MJ. Pulsed magnetic field increases the effect of ultraviolet C radiation and thermal shock in aged yeasts. Int Microbiol 2023; 26:951-959. [PMID: 36997813 PMCID: PMC10622344 DOI: 10.1007/s10123-023-00352-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2023] [Revised: 02/02/2023] [Accepted: 03/25/2023] [Indexed: 04/01/2023]
Abstract
The study of the effects of the magnetic field (MF) on living matter continues to be a dilemma. Until now, the interaction mechanisms of MF with living matter that explain the observed phenomena are unknown. Despite the existing literature and the multiple effects described to date, there are few published articles that study the combined effect of MF with other physical agents during the cellular aging process. In this sense, the aim of this work is to study whether low frequency and intensity pulsed and sinusoidal MF exposure produce alterations in the cell killing effect of ultraviolet C (UVC) radiation and thermal shock during the chronological aging of S. cerevisiae. Yeast cells were exposed to 2.45 mT (50 Hz) sinusoidal MF and 1.5 mT (25 Hz) pulsed MF, during 40 days of aging, in combination with UVC radiation (50 J/m2) and/or thermal shock (52°C). Cell survival was evaluated by clonogenic assay. The exposure of yeast to pulsed MF produces an acceleration of aging, which is not observed in cells exposed to sinusoidal MF. The pulsed MF modifies the cellular response to damaging agents only in aged S. cerevisiae cells. In this sense, the pulsed MF applied increases the damage induced by UVC radiation and by thermal shock. In contrast, the sinusoidal MF used has no effect.
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Affiliation(s)
- Silvia Mercado-Sáenz
- Laboratorio de Radiobiología, Departamento de Radiología y Medicina Física, Facultad de Medicina, Universidad de Málaga, Bulevar Louis Pasteur, 32, 29010, Málaga, Spain
| | - Alejandro González-Vidal
- Laboratorio de Radiobiología, Departamento de Radiología y Medicina Física, Facultad de Medicina, Universidad de Málaga, Bulevar Louis Pasteur, 32, 29010, Málaga, Spain
| | - Antonio M Burgos-Molina
- Laboratorio de Radiobiología, Departamento de Radiología y Medicina Física, Facultad de Medicina, Universidad de Málaga, Bulevar Louis Pasteur, 32, 29010, Málaga, Spain
| | - Beatriz López-Díaz
- Laboratorio de Radiobiología, Departamento de Radiología y Medicina Física, Facultad de Medicina, Universidad de Málaga, Bulevar Louis Pasteur, 32, 29010, Málaga, Spain
| | - Francisco Sendra-Portero
- Laboratorio de Radiobiología, Departamento de Radiología y Medicina Física, Facultad de Medicina, Universidad de Málaga, Bulevar Louis Pasteur, 32, 29010, Málaga, Spain
| | - Miguel J Ruiz-Gómez
- Laboratorio de Radiobiología, Departamento de Radiología y Medicina Física, Facultad de Medicina, Universidad de Málaga, Bulevar Louis Pasteur, 32, 29010, Málaga, Spain.
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8
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Shamshad A, Rashid M, Zaman QU. In-silico analysis of heat shock transcription factor (OsHSF) gene family in rice (Oryza sativa L.). BMC PLANT BIOLOGY 2023; 23:395. [PMID: 37592226 PMCID: PMC10433574 DOI: 10.1186/s12870-023-04399-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/03/2023] [Accepted: 08/03/2023] [Indexed: 08/19/2023]
Abstract
BACKGROUND One of the most important cash crops worldwide is rice (Oryza sativa L.). Under varying climatic conditions, however, its yield is negatively affected. In order to create rice varieties that are resilient to abiotic stress, it is essential to explore the factors that control rice growth, development, and are source of resistance. HSFs (heat shock transcription factors) control a variety of plant biological processes and responses to environmental stress. The in-silico analysis offers a platform for thorough genome-wide identification of OsHSF genes in the rice genome. RESULTS In this study, 25 randomly dispersed HSF genes with significant DNA binding domains (DBD) were found in the rice genome. According to a gene structural analysis, all members of the OsHSF family share Gly-66, Phe-67, Lys-69, Trp-75, Glu-76, Phe-77, Ala-78, Phe-82, Ile-93, and Arg-96. Rice HSF family genes are widely distributed in the vegetative organs, first in the roots and then in the leaf and stem; in contrast, in reproductive tissues, the embryo and lemma exhibit the highest levels of gene expression. According to chromosomal localization, tandem duplication and repetition may have aided in the development of novel genes in the rice genome. OsHSFs have a significant role in the regulation of gene expression, regulation in primary metabolism and tolerance to environmental stress, according to gene networking analyses. CONCLUSION Six genes viz; Os01g39020, Os01g53220, Os03g25080, Os01g54550, Os02g13800 and Os10g28340 were annotated as promising genes. This study provides novel insights for functional studies on the OsHSFs in rice breeding programs. With the ultimate goal of enhancing crops, the data collected in this survey will be valuable for performing genomic research to pinpoint the specific function of the HSF gene during stress responses.
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Affiliation(s)
- Areeqa Shamshad
- Nuclear Institute for Agriculture and Biology College, Pakistan Institute of Engineering and Applied Sciences (NIAB-C, PIEAS), Faisalabad, Pakistan
| | - Muhammad Rashid
- Nuclear Institute for Agriculture and Biology College, Pakistan Institute of Engineering and Applied Sciences (NIAB-C, PIEAS), Faisalabad, Pakistan
| | - Qamar Uz Zaman
- Department of Environmental Sciences, The University of Lahore, Lahore, 54590, Pakistan.
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