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Yu H, Nong X, Huang W, Bhanumas C, Deng X, Ding Y, Liu W. Odorant-Binding and Chemosensory Proteins in Fig Wasps: Evolutionary Insights From Comparative Studies. J Mol Evol 2024; 92:42-60. [PMID: 38280051 DOI: 10.1007/s00239-023-10152-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2023] [Accepted: 12/22/2023] [Indexed: 01/29/2024]
Abstract
Fig wasps (Agaonidae; Hymenoptera) are the only pollinating insects of fig trees (Ficus; Moraceae), forming the most closely and highly specific mutualism with the host. We used transcriptome sequences of 25 fig wasps from six genera to explore the evolution of key molecular components of fig wasp chemosensory genes: odorant-binding proteins (OBPs) and chemosensory proteins (CSPs). We identified a total 321 OBPs and 240 CSPs, with each species recording from 6 to 27 OBP genes and 6-19 CSP genes. 318 OBP genes are clustered into 17 orthologous groups and can be divided into two groups: PBP sensitive to pheromone and GOBP sensitive to general odor molecules, such as alcohols, esters, acids, ketones, and terpenoids. 240 CSP genes are clustered into 12 orthologous groups, which can be divided into three major groups and have functions, such as olfactory, tissue formation and/or regeneration, developmental, and some specific and unknown function. The gene sequences of most orthologous groups vary greatly among species and are consistent with the phylogenetic relationships between fig wasps. Strong purifying selection of both OBP and CSP genes was detected, as shown by low ω values. A positive selection was detected in one locus in CSP1. In conclusion, the evolution of chemosensory proteins OBPs and CSPs in fig wasps is relatively conservative, and they play an indispensable role in the life activities of fig wasps. Our results provide a starting point for understanding the molecular basis of the chemosensory systems of fig wasps.
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Affiliation(s)
- Hui Yu
- Plant Resources Conservation and Sustainable Utilization, The Chinese Academy of Sciences, Guangzhou, 510650, China.
- Guangdong Provincial Key Laboratory of Applied Botany, The Chinese Academy of Sciences, Guangzhou, 510650, China.
| | - Xiaojue Nong
- Plant Resources Conservation and Sustainable Utilization, The Chinese Academy of Sciences, Guangzhou, 510650, China
| | - Weicheng Huang
- Plant Resources Conservation and Sustainable Utilization, The Chinese Academy of Sciences, Guangzhou, 510650, China
| | | | - Xiaoxia Deng
- Plant Resources Conservation and Sustainable Utilization, The Chinese Academy of Sciences, Guangzhou, 510650, China
- Guangdong Provincial Key Laboratory of Applied Botany, The Chinese Academy of Sciences, Guangzhou, 510650, China
| | - Yamei Ding
- Plant Resources Conservation and Sustainable Utilization, The Chinese Academy of Sciences, Guangzhou, 510650, China
| | - Wanzhen Liu
- Plant Resources Conservation and Sustainable Utilization, The Chinese Academy of Sciences, Guangzhou, 510650, China
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Olfactory and gustatory receptor genes in fig wasps: Evolutionary insights from comparative studies. Gene 2023; 850:146953. [PMID: 36243214 DOI: 10.1016/j.gene.2022.146953] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2022] [Revised: 09/17/2022] [Accepted: 10/03/2022] [Indexed: 11/07/2022]
Abstract
The mechanisms of chemoreception in fig wasps (Hymenoptera, Agaonidae) are of primary importance in their co-evolutionary relationship with the fig trees they pollinate. We used transcriptome sequences of 25 fig wasps in six genera that allowed a comparative approach to the evolution of key molecular components of fig wasp chemoreception: their odorant (OR) and gustatory (GR) receptor genes. In total, we identified 311 ORs and 47 GRs, with each species recording from 5 to 30 OR genes and 1-4 GR genes. 304 OR genes clustered into 18 orthologous groups known to be sensitive to cuticular hydrocarbons (CHC), pheromones, acids, alcohols and a variety of floral scents such as cineole, Linalool, and Heptanone. 45 GR genes clustered into 4 orthologous groups that contain sweet, bitter, CO2 and undocumented receptors. Gene sequences in most orthologous groups varied greatly among species, except for ORco (60.0% conserved) and sweet receptors (30.7% conserved). Strong purifying selection of both odorant and gustatory genes was detected, as shown by low ω values. Signatures of positive selection were detected in loci from both OR and GR orthologous groups. Fig wasps have relatively few olfactory and especially gustatory receptors, reflecting the natural history of the system. Amino acid sequences nonetheless vary significantly between species and are consistent with the phylogenetic relationships among fig wasps. The differences in ORs within some orthologous groups from the same species, but different hosts and from closely related species from one host can reach as low as 49.3% and 9.8% respectively, implying the ORs of fig wasps can evolve rapidly to novel ecological environments. Our results provide a starting point for understanding the molecular basis of the chemosensory systems of fig wasps.
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Lim K, Lee S, Orr M, Lee S. Harrison's rule corroborated for the body size of cleptoparasitic cuckoo bees (Hymenoptera: Apidae: Nomadinae) and their hosts. Sci Rep 2022; 12:10984. [PMID: 35768474 PMCID: PMC9243014 DOI: 10.1038/s41598-022-14938-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2022] [Accepted: 06/15/2022] [Indexed: 11/12/2022] Open
Abstract
Harrison’s rule, that body size is positively correlated between parasites and hosts, has been reported in a range of taxa, but whether the rule is applicable to cleptoparasitic insects is poorly understood. Subfamily Nomadinae, the largest group of cleptoparasitic bees, usurp the nests of a variety of host bees. Within the subfamily, Nomada exploits the most diverse hosts, using at least ten genera from five families. Here, we reassess the phylogeny of Nomadinae, including the expanded sampling of the genus Nomada, to explore host shift fluctuations throughout their evolutionary history and test the applicability of Harrison’s rule for the subfamily. Our phylogenetic results are mostly congruent with previous investigations, but we infer the tribe Hexepeolini as a sister taxon to the tribe Nomadini. Additionally, the results reveal discrepancies with the traditional classifications of Nomada. Ancestral state reconstruction of host use indicates that, early in their evolution, parasites used closer relatives, before attacking less related groups later. Lastly, we confirm Harrison’s rule in Nomadinae, supporting that body size dynamics influence the host shifts of cleptoparasitic bees.
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Affiliation(s)
- Kayun Lim
- Insect Biosystematics Laboratory, Department of Agricultural Biotechnology, Seoul National University, Seoul, 08826, Republic of Korea
| | - Seunghyun Lee
- Insect Biosystematics Laboratory, Department of Agricultural Biotechnology, Seoul National University, Seoul, 08826, Republic of Korea.,Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, 92 Box, No. 1 Beichen West Road, Chaoyang District, Beijing, 100101, People's Republic of China
| | - Michael Orr
- Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, 92 Box, No. 1 Beichen West Road, Chaoyang District, Beijing, 100101, People's Republic of China
| | - Seunghwan Lee
- Insect Biosystematics Laboratory, Department of Agricultural Biotechnology, Seoul National University, Seoul, 08826, Republic of Korea. .,Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul, 08826, Republic of Korea.
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