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Li YL, Leu HB, Ting CH, Lim SS, Tsai TY, Wu CH, Chung IF, Liang KH. Predicting long-term time to cardiovascular incidents using myocardial perfusion imaging and deep convolutional neural networks. Sci Rep 2024; 14:3802. [PMID: 38360974 PMCID: PMC10869727 DOI: 10.1038/s41598-024-54139-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2023] [Accepted: 02/08/2024] [Indexed: 02/17/2024] Open
Abstract
Myocardial perfusion imaging (MPI) is a clinical tool which can assess the heart's perfusion status, thereby revealing impairments in patients' cardiac function. Within the MPI modality, the acquired three-dimensional signals are typically represented as a sequence of two-dimensional grayscale tomographic images. Here, we proposed an end-to-end survival training approach for processing gray-scale MPI tomograms to generate a risk score which reflects subsequent time to cardiovascular incidents, including cardiovascular death, non-fatal myocardial infarction, and non-fatal ischemic stroke (collectively known as Major Adverse Cardiovascular Events; MACE) as well as Congestive Heart Failure (CHF). We recruited a total of 1928 patients who had undergone MPI followed by coronary interventions. Among them, 80% (n = 1540) were randomly reserved for the training and 5- fold cross-validation stage, while 20% (n = 388) were set aside for the testing stage. The end-to-end survival training can converge well in generating effective AI models via the fivefold cross-validation approach with 1540 patients. When a candidate model is evaluated using independent images, the model can stratify patients into below-median-risk (n = 194) and above-median-risk (n = 194) groups, the corresponding survival curves of the two groups have significant difference (P < 0.0001). We further stratify the above-median-risk group to the quartile 3 and 4 group (n = 97 each), and the three patient strata, referred to as the high, intermediate and low risk groups respectively, manifest statistically significant difference. Notably, the 5-year cardiovascular incident rate is less than 5% in the low-risk group (accounting for 50% of all patients), while the rate is nearly 40% in the high-risk group (accounting for 25% of all patients). Evaluation of patient subgroups revealed stronger effect size in patients with three blocked arteries (Hazard ratio [HR]: 18.377, 95% CI 3.719-90.801, p < 0.001), followed by those with two blocked vessels at HR 7.484 (95% CI 1.858-30.150; p = 0.005). Regarding stent placement, patients with a single stent displayed a HR of 4.410 (95% CI 1.399-13.904; p = 0.011). Patients with two stents show a HR of 10.699 (95% CI 2.262-50.601; p = 0.003), escalating notably to a HR of 57.446 (95% CI 1.922-1717.207; p = 0.019) for patients with three or more stents, indicating a substantial relationship between the disease severity and the predictive capability of the AI for subsequent cardiovascular inciidents. The success of the MPI AI model in stratifying patients into subgroups with distinct time-to-cardiovascular incidents demonstrated the feasibility of proposed end-to-end survival training approach.
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Affiliation(s)
- Yi-Lian Li
- Institute of Biomedical Informatics, National Yang Ming Chiao Tung University, Taipei City, Taiwan
| | - Hsin-Bang Leu
- Department of Medicine, Taipei Veterans General Hospital, Taipei City, Taiwan
| | - Chien-Hsin Ting
- Department of Nuclear Medicine, Taipei Veterans General Hospital, Taipei City, Taiwan
| | - Su-Shen Lim
- Department of Medicine, Taipei Veterans General Hospital, Taipei City, Taiwan
| | - Tsung-Ying Tsai
- Department of Medicine, Taipei Veterans General Hospital, Taipei City, Taiwan
| | - Cheng-Hsueh Wu
- Department of Medicine, Taipei Veterans General Hospital, Taipei City, Taiwan
| | - I-Fang Chung
- Institute of Biomedical Informatics, National Yang Ming Chiao Tung University, Taipei City, Taiwan.
| | - Kung-Hao Liang
- Department of Medical Research, Taipei Veterans General Hospital, Taipei City, Taiwan.
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Ogunpola A, Saeed F, Basurra S, Albarrak AM, Qasem SN. Machine Learning-Based Predictive Models for Detection of Cardiovascular Diseases. Diagnostics (Basel) 2024; 14:144. [PMID: 38248021 PMCID: PMC10813849 DOI: 10.3390/diagnostics14020144] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2023] [Revised: 12/21/2023] [Accepted: 12/25/2023] [Indexed: 01/23/2024] Open
Abstract
Cardiovascular diseases present a significant global health challenge that emphasizes the critical need for developing accurate and more effective detection methods. Several studies have contributed valuable insights in this field, but it is still necessary to advance the predictive models and address the gaps in the existing detection approaches. For instance, some of the previous studies have not considered the challenge of imbalanced datasets, which can lead to biased predictions, especially when the datasets include minority classes. This study's primary focus is the early detection of heart diseases, particularly myocardial infarction, using machine learning techniques. It tackles the challenge of imbalanced datasets by conducting a comprehensive literature review to identify effective strategies. Seven machine learning and deep learning classifiers, including K-Nearest Neighbors, Support Vector Machine, Logistic Regression, Convolutional Neural Network, Gradient Boost, XGBoost, and Random Forest, were deployed to enhance the accuracy of heart disease predictions. The research explores different classifiers and their performance, providing valuable insights for developing robust prediction models for myocardial infarction. The study's outcomes emphasize the effectiveness of meticulously fine-tuning an XGBoost model for cardiovascular diseases. This optimization yields remarkable results: 98.50% accuracy, 99.14% precision, 98.29% recall, and a 98.71% F1 score. Such optimization significantly enhances the model's diagnostic accuracy for heart disease.
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Affiliation(s)
- Adedayo Ogunpola
- DAAI Research Group, College of Computing and Digital Technology, Birmingham City University, Birmingham B4 7XG, UK; (A.O.); (S.B.)
| | - Faisal Saeed
- DAAI Research Group, College of Computing and Digital Technology, Birmingham City University, Birmingham B4 7XG, UK; (A.O.); (S.B.)
| | - Shadi Basurra
- DAAI Research Group, College of Computing and Digital Technology, Birmingham City University, Birmingham B4 7XG, UK; (A.O.); (S.B.)
| | - Abdullah M. Albarrak
- Computer Science Department, College of Computer and Information Sciences, Imam Mohammad Ibn Saud Islamic University (IMSIU), Riyadh 11432, Saudi Arabia; (A.M.A.); (S.N.Q.)
| | - Sultan Noman Qasem
- Computer Science Department, College of Computer and Information Sciences, Imam Mohammad Ibn Saud Islamic University (IMSIU), Riyadh 11432, Saudi Arabia; (A.M.A.); (S.N.Q.)
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Amini M, Pursamimi M, Hajianfar G, Salimi Y, Saberi A, Mehri-Kakavand G, Nazari M, Ghorbani M, Shalbaf A, Shiri I, Zaidi H. Machine learning-based diagnosis and risk classification of coronary artery disease using myocardial perfusion imaging SPECT: A radiomics study. Sci Rep 2023; 13:14920. [PMID: 37691039 PMCID: PMC10493219 DOI: 10.1038/s41598-023-42142-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2023] [Accepted: 09/06/2023] [Indexed: 09/12/2023] Open
Abstract
This study aimed to investigate the diagnostic performance of machine learning-based radiomics analysis to diagnose coronary artery disease status and risk from rest/stress Myocardial Perfusion Imaging (MPI) single-photon emission computed tomography (SPECT). A total of 395 patients suspicious of coronary artery disease who underwent 2-day stress-rest protocol MPI SPECT were enrolled in this study. The left ventricle myocardium, excluding the cardiac cavity, was manually delineated on rest and stress images to define a volume of interest. Added to clinical features (age, sex, family history, diabetes status, smoking, and ejection fraction), a total of 118 radiomics features, were extracted from rest and stress MPI SPECT images to establish different feature sets, including Rest-, Stress-, Delta-, and Combined-radiomics (all together) feature sets. The data were randomly divided into 80% and 20% subsets for training and testing, respectively. The performance of classifiers built from combinations of three feature selections, and nine machine learning algorithms was evaluated for two different diagnostic tasks, including 1) normal/abnormal (no CAD vs. CAD) classification, and 2) low-risk/high-risk CAD classification. Different metrics, including the area under the ROC curve (AUC), accuracy (ACC), sensitivity (SEN), and specificity (SPE), were reported for models' evaluation. Overall, models built on the Stress feature set (compared to other feature sets), and models to diagnose the second task (compared to task 1 models) revealed better performance. The Stress-mRMR-KNN (feature set-feature selection-classifier) reached the highest performance for task 1 with AUC, ACC, SEN, and SPE equal to 0.61, 0.63, 0.64, and 0.6, respectively. The Stress-Boruta-GB model achieved the highest performance for task 2 with AUC, ACC, SEN, and SPE of 0.79, 0.76, 0.75, and 0.76, respectively. Diabetes status from the clinical feature family, and dependence count non-uniformity normalized, from the NGLDM family, which is representative of non-uniformity in the region of interest were the most frequently selected features from stress feature set for CAD risk classification. This study revealed promising results for CAD risk classification using machine learning models built on MPI SPECT radiomics. The proposed models are helpful to alleviate the labor-intensive MPI SPECT interpretation process regarding CAD status and can potentially expedite the diagnostic process.
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Affiliation(s)
- Mehdi Amini
- Division of Nuclear Medicine and Molecular Imaging, Geneva University Hospital, CH-1211, Geneva 4, Switzerland
| | - Mohamad Pursamimi
- Department of Biomedical Engineering and Medical Physics, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Ghasem Hajianfar
- Division of Nuclear Medicine and Molecular Imaging, Geneva University Hospital, CH-1211, Geneva 4, Switzerland
| | - Yazdan Salimi
- Division of Nuclear Medicine and Molecular Imaging, Geneva University Hospital, CH-1211, Geneva 4, Switzerland
| | - Abdollah Saberi
- Division of Nuclear Medicine and Molecular Imaging, Geneva University Hospital, CH-1211, Geneva 4, Switzerland
| | - Ghazal Mehri-Kakavand
- Department of Medical Physics, School of Medicine, Semnan University of Medical Sciences, Semnan, Iran
| | - Mostafa Nazari
- Department of Biomedical Engineering and Medical Physics, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Mahdi Ghorbani
- Department of Biomedical Engineering and Medical Physics, Shahid Beheshti University of Medical Sciences, Tehran, Iran.
| | - Ahmad Shalbaf
- Department of Biomedical Engineering and Medical Physics, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Isaac Shiri
- Division of Nuclear Medicine and Molecular Imaging, Geneva University Hospital, CH-1211, Geneva 4, Switzerland
- Department of Cardiology, Inselspital, University of Bern, Bern, Switzerland
| | - Habib Zaidi
- Division of Nuclear Medicine and Molecular Imaging, Geneva University Hospital, CH-1211, Geneva 4, Switzerland.
- University Research and Innovation Center, Obuda University, Budapest, Hungary.
- Department of Nuclear Medicine and Molecular Imaging, University of Groningen, University of Medical Center Groningen, Groningen, The Netherlands.
- Department of Nuclear Medicine, University of Southern Denmark, Odense, Denmark.
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Jomthanachai S, Wong WP, Khaw KW. An Application of Machine Learning to Logistics Performance Prediction: An Economics Attribute-Based of Collective Instance. COMPUTATIONAL ECONOMICS 2023; 63:1-52. [PMID: 36747892 PMCID: PMC9891660 DOI: 10.1007/s10614-023-10358-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Accepted: 01/15/2023] [Indexed: 06/18/2023]
Abstract
In this work, a machine learning application was constructed to predict the logistics performance index based on economic attributes. The prediction procedure employs both linear and non-linear machine learning algorithms. The macroeconomic panel dataset is used in this investigation. Furthermore, it was combined with the microeconomic panel dataset obtained through the data envelopment analysis method for evaluating financial efficiency. The procedure was implemented in six ASEAN member countries. The non-linear algorithm of an artificial neural network performed best on the complex pattern of a collective instance of these six countries, followed by the penalized linear of the Ridge regression method. Due to the limited amount of training data for each country, the artificial neural network prediction procedure is only applicable to the datasets of Singapore, Malaysia, and the Philippines. Ridge regression fits the Indonesia, Thailand and Vietnam datasets. The results provide precise trend forecasting. Macroeconomic factors are driving up the logistics performance index in Vietnam in 2020. Malaysia logistics performance is influenced by the logistics business's financial efficiency. The results at the country level can be used to track, improve, and reform the country's short-term logistics and supply chain policies. This can bring significant gains in national logistics and supply chain capabilities, as well as support for global trade collaboration, all for the long-term development of the region.
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Affiliation(s)
- Suriyan Jomthanachai
- Faculty of Management Sciences, Prince of Songkla University (PSU), Songkhla, 90112 Thailand
| | - Wai Peng Wong
- School of Information Technology, Monash University, Malaysia Campus, Selangor, Malaysia
| | - Khai Wah Khaw
- School of Management, Universiti Sains Malaysia, 11800 Penang, Malaysia
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Papandrianos NI, Apostolopoulos ID, Feleki A, Moustakidis S, Kokkinos K, Papageorgiou EI. AI-based classification algorithms in SPECT myocardial perfusion imaging for cardiovascular diagnosis: a review. Nucl Med Commun 2023; 44:1-11. [PMID: 36514926 DOI: 10.1097/mnm.0000000000001634] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
In the last few years, deep learning has made a breakthrough and established its position in machine learning classification problems in medical image analysis. Deep learning has recently displayed remarkable applicability in a range of different medical applications, as well as in nuclear cardiology. This paper implements a literature review protocol and reports the latest advances in artificial intelligence (AI)-based classification in SPECT myocardial perfusion imaging in heart disease diagnosis. The representative and most recent works are reported to demonstrate the use of AI and deep learning technologies in medical image analysis in nuclear cardiology for cardiovascular diagnosis. This review also analyses the primary outcomes of the presented research studies and suggests future directions focusing on the explainability of the deployed deep-learning systems in clinical practice.
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Affiliation(s)
| | | | - Anna Feleki
- Department of Energy Systems, University of Thessaly, Larisa, Greece
| | - Serafeim Moustakidis
- Department of Energy Systems, University of Thessaly, Larisa, Greece
- AIDEAS OÜ, Tallinn, Estonia
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An Explainable Classification Method of SPECT Myocardial Perfusion Images in Nuclear Cardiology Using Deep Learning and Grad-CAM. APPLIED SCIENCES-BASEL 2022. [DOI: 10.3390/app12157592] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
Background: This study targets the development of an explainable deep learning methodology for the automatic classification of coronary artery disease, utilizing SPECT MPI images. Deep learning is currently judged as non-transparent due to the model’s complex non-linear structure, and thus, it is considered a «black box», making it hard to gain a comprehensive understanding of its internal processes and explain its behavior. Existing explainable artificial intelligence tools can provide insights into the internal functionality of deep learning and especially of convolutional neural networks, allowing transparency and interpretation. Methods: This study seeks to address the identification of patients’ CAD status (infarction, ischemia or normal) by developing an explainable deep learning pipeline in the form of a handcrafted convolutional neural network. The proposed RGB-CNN model utilizes various pre- and post-processing tools and deploys a state-of-the-art explainability tool to produce more interpretable predictions in decision making. The dataset includes cases from 625 patients as stress and rest representations, comprising 127 infarction, 241 ischemic, and 257 normal cases previously classified by a doctor. The imaging dataset was split into 20% for testing and 80% for training, of which 15% was further used for validation purposes. Data augmentation was employed to increase generalization. The efficacy of the well-known Grad-CAM-based color visualization approach was also evaluated in this research to provide predictions with interpretability in the detection of infarction and ischemia in SPECT MPI images, counterbalancing any lack of rationale in the results extracted by the CNNs. Results: The proposed model achieved 93.3% accuracy and 94.58% AUC, demonstrating efficient performance and stability. Grad-CAM has shown to be a valuable tool for explaining CNN-based judgments in SPECT MPI images, allowing nuclear physicians to make fast and confident judgments by using the visual explanations offered. Conclusions: Prediction results indicate a robust and efficient model based on the deep learning methodology which is proposed for CAD diagnosis in nuclear medicine.
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