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Kibar G, Sarıarslan B, Doğanay S, Yıldız G, Usta OB, Çetin B. Novel 3D-Printed Microfluidic Magnetic Platform for Rapid DNA Isolation. Anal Chem 2024; 96:1985-1992. [PMID: 38254336 DOI: 10.1021/acs.analchem.3c04412] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2024]
Abstract
This study presents a novel miniaturized device as a 3D-printed microfluidic magnetic platform specifically designed to manipulate magnetic microparticles in a microfluidic chip for rapid deoxyribonucleic acid (DNA) isolation. The novel design enables the movement of the magnetic particles in the same or opposite directions with the flow or suspends them in continuous flow. A computational model was developed to assess the effectiveness of the magnetic manipulation of the particles. Superparamagnetic monodisperse silica particles synthesized in-house are utilized for the isolation of fish sperm DNA and human placenta DNA. It was demonstrated that the proposed platform can perform DNA isolation within 10 min with an isolation efficiency of 50% at optimum operating conditions.
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Affiliation(s)
- Güneş Kibar
- Department of Materials Science and Engineering, Adana Alparslan Türkeş Science and Technology University, Adana 01250, Turkey
- Center for Engineering in Medicine and Surgery, Department of Surgery, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts 02114, United States
- UNAM─National Nanotechnology Research Center and Institute of Materials Science and Nanotechnology, Bilkent University, Ankara 06800, Turkey
| | - Büşra Sarıarslan
- UNAM─National Nanotechnology Research Center and Institute of Materials Science and Nanotechnology, Bilkent University, Ankara 06800, Turkey
- Microfluidics & Lab-on-a-chip Research Group, Mechanical Engineering Department, Bilkent University, Ankara 06800, Turkey
| | - Serkan Doğanay
- Mechatronics Engineering Department İzmir Katip Çelebi University, İzmir 35620, Turkey
| | - Gökay Yıldız
- TEKGEN Healthcare Services Inc., Ümraniye, İstanbul 34775, Turkey
| | - O Berk Usta
- Center for Engineering in Medicine and Surgery, Department of Surgery, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts 02114, United States
- Shriners Children's Hospital, Boston, Massachusetts 02114, United States
| | - Barbaros Çetin
- UNAM─National Nanotechnology Research Center and Institute of Materials Science and Nanotechnology, Bilkent University, Ankara 06800, Turkey
- Microfluidics & Lab-on-a-chip Research Group, Mechanical Engineering Department, Bilkent University, Ankara 06800, Turkey
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Thorne N, Flores-Olazo L, Egoávil-Espejo R, Vela EA, Noel J, Valdivia-Silva J, van Noort D. Systematic Review: Microfluidics and Plasmodium. MICROMACHINES 2021; 12:mi12101245. [PMID: 34683295 PMCID: PMC8538353 DOI: 10.3390/mi12101245] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/10/2021] [Revised: 10/02/2021] [Accepted: 10/04/2021] [Indexed: 11/23/2022]
Abstract
Malaria affects 228 million people worldwide each year, causing severe disease and worsening the conditions of already vulnerable populations. In this review, we explore how malaria has been detected in the past and how it can be detected in the future. Our primary focus is on finding new directions for low-cost diagnostic methods that unspecialized personnel can apply in situ. Through this review, we show that microfluidic devices can help pre-concentrate samples of blood infected with malaria to facilitate the diagnosis. Importantly, these devices can be made cheaply and be readily deployed in remote locations.
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Affiliation(s)
- Nicolas Thorne
- Centro de Investigación en Bioingeniería, Universidad de Ingenieria y Tecnologia (UTEC), 15063 Lima, Peru; (L.F.-O.); (R.E.-E.); (E.A.V.); (J.N.); (J.V.-S.)
- Correspondence: (N.T.); (D.v.N.)
| | - Luis Flores-Olazo
- Centro de Investigación en Bioingeniería, Universidad de Ingenieria y Tecnologia (UTEC), 15063 Lima, Peru; (L.F.-O.); (R.E.-E.); (E.A.V.); (J.N.); (J.V.-S.)
| | - Rocío Egoávil-Espejo
- Centro de Investigación en Bioingeniería, Universidad de Ingenieria y Tecnologia (UTEC), 15063 Lima, Peru; (L.F.-O.); (R.E.-E.); (E.A.V.); (J.N.); (J.V.-S.)
| | - Emir A. Vela
- Centro de Investigación en Bioingeniería, Universidad de Ingenieria y Tecnologia (UTEC), 15063 Lima, Peru; (L.F.-O.); (R.E.-E.); (E.A.V.); (J.N.); (J.V.-S.)
- Department of Mechanical Engineering, Universidad de Ingenieria y Tecnologia (UTEC), 15063 Lima, Peru
| | - Julien Noel
- Centro de Investigación en Bioingeniería, Universidad de Ingenieria y Tecnologia (UTEC), 15063 Lima, Peru; (L.F.-O.); (R.E.-E.); (E.A.V.); (J.N.); (J.V.-S.)
- Department of Mechanical Engineering, Universidad de Ingenieria y Tecnologia (UTEC), 15063 Lima, Peru
| | - Julio Valdivia-Silva
- Centro de Investigación en Bioingeniería, Universidad de Ingenieria y Tecnologia (UTEC), 15063 Lima, Peru; (L.F.-O.); (R.E.-E.); (E.A.V.); (J.N.); (J.V.-S.)
| | - Danny van Noort
- Centro de Investigación en Bioingeniería, Universidad de Ingenieria y Tecnologia (UTEC), 15063 Lima, Peru; (L.F.-O.); (R.E.-E.); (E.A.V.); (J.N.); (J.V.-S.)
- Biotechnology, Linköping University, 581 83 Linköping, Sweden
- Correspondence: (N.T.); (D.v.N.)
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Su J, Chen X, Zhu Y, Hu G. Machine learning assisted fast prediction of inertial lift in microchannels. LAB ON A CHIP 2021; 21:2544-2556. [PMID: 33998624 DOI: 10.1039/d1lc00225b] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Abstract
Inertial effect has been extensively used in manipulating both engineered particles and biocolloids in microfluidic platforms. The design of inertial microfluidic devices largely relies on precise prediction of particle migration that is determined by the inertial lift acting on the particle. In spite of being the only means to accurately obtain the lift forces, direct numerical simulation (DNS) often consumes high computational cost and even becomes impractical when applied to microchannels with complex geometries. Herein, we proposed a fast numerical algorithm in conjunction with machine learning techniques for the analysis and design of inertial microfluidic devices. A database of inertial lift forces was first generated by conducting DNS over a wide range of operating parameters in straight microchannels with three types of cross-sectional shapes, including rectangular, triangular and semicircular shapes. A machine learning assisted model was then developed to gain the inertial lift distribution, by simply specifying the cross-sectional shape, Reynolds number and particle blockage ratio. The resultant inertial lift was integrated into the Lagrangian tracking method to quickly predict the particle trajectories in two types of microchannels in practical devices and yield good agreement with experimental observations. Our database and the associated codes allow researchers to expedite the development of the inertial microfluidic devices for particle manipulation.
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Affiliation(s)
- Jinghong Su
- Department of Engineering Mechanics, State Key Laboratory of Fluid Power and Mechatronic Systems, Zhejiang University, Hangzhou 310027, China. and The State Key Laboratory of Nonlinear Mechanics (LNM), Institute of Mechanics, Chinese Academy of Sciences, Beijing 100190, China and School of Engineering Science, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Xiaodong Chen
- School of Aerospace Engineering, Beijing Institute of Technology, Beijing 100081, China
| | - Yongzheng Zhu
- The State Key Laboratory of Nonlinear Mechanics (LNM), Institute of Mechanics, Chinese Academy of Sciences, Beijing 100190, China and School of Engineering Science, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Guoqing Hu
- Department of Engineering Mechanics, State Key Laboratory of Fluid Power and Mechatronic Systems, Zhejiang University, Hangzhou 310027, China.
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Naseri M, Simon GP, Batchelor W. Development of a Paper-Based Microfluidic System for a Continuous High-Flow-Rate Fluid Manipulation. Anal Chem 2020; 92:7307-7316. [PMID: 32290646 DOI: 10.1021/acs.analchem.0c01003] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
The current study describes the development of a disposable paper-based microfluidic system, which unlike its predecessors that are only capable of processing a small amount of fluid, can continuously process the fluid at a high flow rate of up to 1.5 mL/min. The fabrication procedure was clean-room-free and robust, involving the use of a CO2 laser to engrave the microchannels on a paper substrate, followed by alkenyl ketene dimer treatment to hydrophobize the paper and lamination. The microchannel down to a minimum depth of ∼80 μm with an average roughness of ∼8 μm was engraved on the substrate. As a proof of concept, the applicability of this system to enrich the microparticles based on the inertial focusing mechanism was tested. This new generation of paper-based microfluidic system can be potentially used for the diagnostic applications where the analyte is low in quantity and processing a large volume of fluid sample is required.
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Affiliation(s)
- Mahdi Naseri
- Bioresource Processing Research Institute of Australia (BioPRIA), Department of Chemical Engineering, Monash University, Clayton, VIC 3800, Australia
| | - George P Simon
- Department of Materials Science and Engineering, Monash University, Clayton, VIC 3800, Australia
| | - Warren Batchelor
- Bioresource Processing Research Institute of Australia (BioPRIA), Department of Chemical Engineering, Monash University, Clayton, VIC 3800, Australia
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Razavi Bazaz S, Mashhadian A, Ehsani A, Saha SC, Krüger T, Ebrahimi Warkiani M. Computational inertial microfluidics: a review. LAB ON A CHIP 2020; 20:1023-1048. [PMID: 32067001 DOI: 10.1039/c9lc01022j] [Citation(s) in RCA: 65] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
Since the discovery of inertial focusing in 1961, numerous theories have been put forward to explain the migration of particles in inertial flows, but a complete understanding is still lacking. Recently, computational approaches have been utilized to obtain better insights into the underlying physics. In particular, fundamental aspects of particle focusing inside straight and curved microchannels have been explored in detail to determine the dependence of focusing behavior on particle size, channel shape, and flow Reynolds number. In this review, we differentiate between the models developed for inertial particle motion on the basis of whether they are semi-analytical, Navier-Stokes-based, or built on the lattice Boltzmann method. This review provides a blueprint for the consideration of numerical solutions for modeling of inertial particle motion, whether deformable or rigid, spherical or non-spherical, and whether suspended in Newtonian or non-Newtonian fluids. In each section, we provide the general equations used to solve particle motion, followed by a tutorial appendix and specified sections to engage the reader with details of the numerical studies. Finally, we address the challenges ahead in the modeling of inertial particle microfluidics for future investigators.
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Affiliation(s)
- Sajad Razavi Bazaz
- School of Biomedical Engineering, University of Technology Sydney, Sydney, New South Wales 2007, Australia.
| | - Ali Mashhadian
- School of Mechanical Engineering, Sharif University, Tehran, Iran
| | - Abbas Ehsani
- School of Mechanical Engineering, University of Tehran, Tehran, Iran
| | - Suvash Chandra Saha
- School of Mechanical and Mechatronic Engineering, University of Technology Sydney, Sydney, NSW 2007, Australia
| | - Timm Krüger
- School of Engineering, Institute for Multiscale Thermofluids, The University of Edinburgh, Edinburgh EH9 3FB, UK
| | - Majid Ebrahimi Warkiani
- School of Biomedical Engineering, University of Technology Sydney, Sydney, New South Wales 2007, Australia. and Institute of Molecular Medicine, Sechenov First Moscow State University, Moscow 119991, Russia
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Inertial Focusing and Separation of Particles in Similar Curved Channels. Sci Rep 2019; 9:16575. [PMID: 31719582 PMCID: PMC6851121 DOI: 10.1038/s41598-019-52983-z] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2019] [Accepted: 10/26/2019] [Indexed: 01/27/2023] Open
Abstract
Inertial particle focusing in curved channels has enormous potential for lab-on-a-chip applications. This paper compares a zigzag channel, which has not been used previously for inertial focusing studies, with a serpentine channel and a square wave channel to explore their differences in terms of focusing performance and separation possibilities. The particle trajectories and fluid fields in the curved channels are studied by a numerical simulation. The effects of different conditions (structure, Reynolds number, and particle size) on the competition between forces and the focusing performance are studied. The results indicate that the zigzag channel has the best focusing effect at a high Reynolds number and that the serpentine channel is second in terms of performance. Regarding the particle separation potential, the zigzag channel has a good performance in separating 5 μm and 10 μm particles at ReC = 62.5. In addition, the pressure drop of the channel is also considered to evaluate the channel performance, which has not been taken into account in the literature on inertial microfluidics. This result is expected to be instructive for the selection and optimization of inertial microchannel structures.
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Mashhadian A, Shamloo A. Inertial microfluidics: A method for fast prediction of focusing pattern of particles in the cross section of the channel. Anal Chim Acta 2019; 1083:137-149. [PMID: 31493804 DOI: 10.1016/j.aca.2019.06.057] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2019] [Revised: 06/24/2019] [Accepted: 06/26/2019] [Indexed: 12/13/2022]
Abstract
Inertial microfluidics is utilized as a powerful passive method for particle and cell manipulation, which uses the hydrodynamic forces of the fluid in the channel to focus particles in specific equilibrium positions in the cross section of the channel. To achieve high performance manipulation, knowledge of focusing pattern of particles in the cross section of channel is essential. In this paper, we propose a method to address this important issue. To this end, firstly inertial microfluidics is analyzed in rectangular cross section channels. The results indicate that fluid flow velocity and channel's cross-sectional profiles have great impacts on the forces exerted on particles. Next, these results are utilized to propose a method to predict equilibrium positions in non-rectangular cross section channels through some simple calculations. This method is based on approximating the velocity profile of a non-rectangular cross section channel by utilizing portions of velocity profiles of different rectangular cross section channels. To analyze the method's performance, results obtained from the proposed method are compared with Direct Numerical Simulation (DNS) and experimental studies of seven non-rectangular channels. It is observed that the proposed approach accurately predicts particles trajectories and their equilibrium positions in the cross section of channels.
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Affiliation(s)
- Ali Mashhadian
- School of Mechanical Engineering, Sharif University of Technology, Tehran, Iran
| | - Amir Shamloo
- School of Mechanical Engineering, Sharif University of Technology, Tehran, Iran.
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