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Putrino A, Marinelli E, Galeotti A, Ferrazzano GF, Ciribè M, Zaami S. A Journey into the Evolution of Human Host-Oral Microbiome Relationship through Ancient Dental Calculus: A Scoping Review. Microorganisms 2024; 12:902. [PMID: 38792733 PMCID: PMC11123932 DOI: 10.3390/microorganisms12050902] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2024] [Revised: 04/23/2024] [Accepted: 04/27/2024] [Indexed: 05/26/2024] Open
Abstract
One of the most promising areas of research in palaeomicrobiology is the study of the human microbiome. In particular, ancient dental calculus helps to reconstruct a substantial share of oral microbiome composition by mapping together human evolution with its state of health/oral disease. This review aims to trace microbial characteristics in ancient dental calculus to describe the evolution of the human host-oral microbiome relationship in oral health or disease in children and adults. Following the PRISMA-Extension for Scoping Reviews guidelines, the main scientific databases (PubMed, Scopus, Lilacs, Cochrane Library) have been drawn upon. Eligibility criteria were established, and all the data collected on a purpose-oriented collection form were analysed descriptively. From the initial 340 records, only 19 studies were deemed comprehensive enough for the purpose of this review. The knowledge of the composition of ancient oral microbiomes has broadened over the past few years thanks to increasingly well-performing decontamination protocols and additional analytical avenues. Above all, metagenomic sequencing, also implemented by state-of-the-art bioinformatics tools, allows for the determination of the qualitative-quantitative composition of microbial species associated with health status and caries/periodontal disease. Some microbial species, especially periodontal pathogens, do not appear to have changed in history, while others that support caries disease or oral health could be connected to human evolution through lifestyle and environmental contributing factors.
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Affiliation(s)
- Alessandra Putrino
- Dentistry Unit, Management Innovations, Diagnostics and Clinical Pathways, Bambino Gesù Children’s Hospital, IRCCS, 00165 Rome, Italy; (A.G.); (M.C.)
| | - Enrico Marinelli
- Department of Medico-Surgical Sciences and Biotechnologies, Sapienza University of Rome, 04100 Latina, Italy;
| | - Angela Galeotti
- Dentistry Unit, Management Innovations, Diagnostics and Clinical Pathways, Bambino Gesù Children’s Hospital, IRCCS, 00165 Rome, Italy; (A.G.); (M.C.)
- U.N.-E.U. INTERNATIONAL RESEARCH PROJECT ON HUMAN HEALTH-ORAL HEALTH SECTION, 1200 Géneve, Switzerland;
| | - Gianmaria Fabrizio Ferrazzano
- U.N.-E.U. INTERNATIONAL RESEARCH PROJECT ON HUMAN HEALTH-ORAL HEALTH SECTION, 1200 Géneve, Switzerland;
- UNESCO Chair in Health Education and Sustainable Development, Dentistry Section, University of Naples “Federico II”, 80138 Naples, Italy
- East-Asian-Pacific International Academic Consortium
| | - Massimiliano Ciribè
- Dentistry Unit, Management Innovations, Diagnostics and Clinical Pathways, Bambino Gesù Children’s Hospital, IRCCS, 00165 Rome, Italy; (A.G.); (M.C.)
| | - Simona Zaami
- Department of Anatomical, Histological, Forensic and Orthopedic Sciences, Sapienza University of Rome, 00161 Rome, Italy;
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Phyu AN, Aung ST, Palittapongarnpim P, Htet KKK, Mahasirimongkol S, Ruangchai W, Jaemsai B, Aung HL, Maung HMW, Chaiprasert A, Pungrassami P, Chongsuvivatwong V. Genomic Sequencing Profiles of Mycobacterium tuberculosis in Mandalay Region, Myanmar. Trop Med Infect Dis 2023; 8:239. [PMID: 37104364 PMCID: PMC10141229 DOI: 10.3390/tropicalmed8040239] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2023] [Revised: 04/05/2023] [Accepted: 04/18/2023] [Indexed: 04/28/2023] Open
Abstract
This study aimed to characterize whole-genome sequencing (WGS) information of Mycobacterium tuberculosis (Mtb) in the Mandalay region of Myanmar. It was a cross-sectional study conducted with 151 Mtb isolates obtained from the fourth nationwide anti-tuberculosis (TB) drug-resistance survey. Frequency of lineages 1, 2, 3, and 4 were 55, 65, 9, and 22, respectively. The most common sublineage was L1.1.3.1 (n = 31). Respective multi-drug resistant tuberculosis (MDR-TB) frequencies were 1, 1, 0, and 0. Four clusters of 3 (L2), 2 (L4), 2 (L1), and 2 (L2) isolates defined by a 20-single-nucleotide variant (SNV) cutoff were detected. Simpson's index for sublineages was 0.0709. Such high diversity suggests that the area probably had imported Mtb from many geographical sources. Relatively few genetic clusters and MDR-TB suggest there is a chance the future control will succeed if it is carried out properly.
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Affiliation(s)
- Aye Nyein Phyu
- National Tuberculosis Programme, Department of Public Health, Ministry of Health, Mandalay 05071, Myanmar
- Department of Epidemiology, Faculty of Medicine, Prince of Songkla University, Hat Yai 90110, Thailand
| | - Si Thu Aung
- Department of Public Health, Ministry of Health, Keng Tung 06231, Myanmar
| | - Prasit Palittapongarnpim
- Pornchai Matangkasombut Center for Microbial Genomics, Department of Microbiology, Faculty of Science, Mahidol University, Bangkok 10400, Thailand
| | - Kyaw Ko Ko Htet
- Department of Epidemiology, Faculty of Medicine, Prince of Songkla University, Hat Yai 90110, Thailand
| | - Surakameth Mahasirimongkol
- Medical Life Sciences Institute, Department of Medical Sciences, Ministry of Public Health, Nonthaburi 11000, Thailand
| | - Wuthiwat Ruangchai
- Pornchai Matangkasombut Center for Microbial Genomics, Department of Microbiology, Faculty of Science, Mahidol University, Bangkok 10400, Thailand
| | - Bharkbhoom Jaemsai
- Pornchai Matangkasombut Center for Microbial Genomics, Department of Microbiology, Faculty of Science, Mahidol University, Bangkok 10400, Thailand
| | - Htin Lin Aung
- Department of Microbiology and Immunology, University of Otago, Dunedin 9016, New Zealand
| | - Htet Myat Win Maung
- Department of Epidemiology, Faculty of Medicine, Prince of Songkla University, Hat Yai 90110, Thailand
| | - Angkana Chaiprasert
- Office of Research and Innovation, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok 10700, Thailand
| | - Petchawan Pungrassami
- Department of Disease Control, Ministry of Public Health, Nonthaburi 11000, Thailand
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Appegren A, Boschiroli ML, De Cruz K, Michelet L, Héry-Arnaud G, Kempf M, Lanotte P, Bemer P, Peuchant O, Pestel-Caron M, Skalli S, Brasme L, Martin C, Enault C, Carricajo A, Guet-Revillet H, Ponsoda M, Jacomo V, Bourgoin A, Trombert-Paolantoni S, Carrière C, Dupont C, Conquet G, Galal L, Banuls AL, Godreuil S. Genetic Diversity and Population Structure of Mycobacterium bovis at the Human-Animal-Ecosystem Interface in France: “A One Health Approach”. Pathogens 2023; 12:pathogens12040548. [PMID: 37111434 PMCID: PMC10143977 DOI: 10.3390/pathogens12040548] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2023] [Revised: 03/21/2023] [Accepted: 03/29/2023] [Indexed: 04/05/2023] Open
Abstract
Mycobacterium bovis infects cattle and wildlife, and also causes a small proportion of tuberculosis cases in humans. In most European countries, M. bovis infections in cattle have been drastically reduced, but not eradicated. Here, to determine the M. bovis circulation within and between the human, cattle, and wildlife compartments, we characterized by spoligotyping and mycobacterial interspersed repetitive unit-variable number tandem repeat (MIRU-VNTR) typing the genetic diversity of M. bovis isolates collected from humans, cattle, and wildlife in France from 2000 to 2010. We also assessed their genetic structure within and among the different host groups, and across time and space. The M. bovis genetic structure and its spatiotemporal variations showed different dynamics in the human and animal compartments. Most genotypes detected in human isolates were absent in cattle and wildlife isolates, possibly because in patients, M. bovis infection was contracted abroad or was the reactivation of an old lesion. Therefore, they did not match the genetic pool present in France during the study period. However, some human-cattle exchanges occurred because some genotypes were common to both compartments. This study provides new elements for understanding M. bovis epidemiology in France, and calls for increased efforts to control this pathogen worldwide.
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Affiliation(s)
- Anaïs Appegren
- Laboratory of Bacteriology, CHU Montpellier, 34000 Montpellier, France
| | - Maria Laura Boschiroli
- ANSES Laboratory for Animal Health, Tuberculosis National Reference Laboratory, University Paris-Est, 94000 Maisons-Alfort, France
| | - Krystel De Cruz
- ANSES Laboratory for Animal Health, Tuberculosis National Reference Laboratory, University Paris-Est, 94000 Maisons-Alfort, France
| | - Lorraine Michelet
- ANSES Laboratory for Animal Health, Tuberculosis National Reference Laboratory, University Paris-Est, 94000 Maisons-Alfort, France
| | | | - Marie Kempf
- Laboratory of Bacteriology, CHU Angers, 49000 Angers, France
| | | | - Pascale Bemer
- Laboratory of Bacteriology, CHU Nantes, 44000 Nantes, France
| | - Olivia Peuchant
- Laboratory of Bacteriology, CHU Bordeaux, 33000 Bordeaux, France
| | | | - Soumaya Skalli
- Laboratory of Bacteriology, CHU Rouen, 76000 Rouen, France
| | - Lucien Brasme
- Laboratory of Bacteriology, CHU Reims, 51000 Reims, France
| | | | - Cecilia Enault
- Laboratory of Bacteriology, CHU Nîmes, 30000 Nîmes, France
| | - Anne Carricajo
- Laboratory of Bacteriology, CHU Saint-Etienne, 42000 Saint-Etienne, France
| | | | | | | | - Anne Bourgoin
- Laboratory of Bacteriology, CHU Poitiers, 86000 Poitiers, France
| | | | - Christian Carrière
- Laboratory of Bacteriology, CHU Montpellier, 34000 Montpellier, France
- UMR, MIVEGEC, IRD, CNRS, Université de Montpellier, 34000 Montpellier, France
| | - Chloé Dupont
- Laboratory of Bacteriology, CHU Montpellier, 34000 Montpellier, France
| | - Guilhem Conquet
- Laboratory of Bacteriology, CHU Montpellier, 34000 Montpellier, France
| | - Lokman Galal
- UMR, MIVEGEC, IRD, CNRS, Université de Montpellier, 34000 Montpellier, France
| | - Anne-Laure Banuls
- UMR, MIVEGEC, IRD, CNRS, Université de Montpellier, 34000 Montpellier, France
| | - Sylvain Godreuil
- Laboratory of Bacteriology, CHU Montpellier, 34000 Montpellier, France
- UMR, MIVEGEC, IRD, CNRS, Université de Montpellier, 34000 Montpellier, France
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