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Hou M, Leng C, Zhu J, Yang M, Yin Y, Xing Y, Chen J. Alpine and subalpine plant microbiome mediated plants adapt to the cold environment: A systematic review. ENVIRONMENTAL MICROBIOME 2024; 19:82. [PMID: 39487507 PMCID: PMC11529171 DOI: 10.1186/s40793-024-00614-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/16/2024] [Accepted: 09/02/2024] [Indexed: 11/04/2024]
Abstract
With global climate change, ecosystems are affected, some of which are more vulnerable than others, such as alpine ecosystems. Microbes play an important role in environmental change in global ecosystems. Plants and microbes are tightly associated, and symbiotic or commensal microorganisms are crucial for plants to respond to stress, particularly for alpine plants. The current study of alpine and subalpine plant microbiome only stays at the community structure scale, but its ecological function and mechanism to help plants to adapt to the harsh environments have not received enough attention. Therefore, it is essential to systematically understand the structure, functions and mechanisms of the microbial community of alpine and subalpine plants, which will be helpful for the conservation of alpine and subalpine plants using synthetic microbial communities in the future. This review mainly summarizes the research progress of the alpine plant microbiome and its mediating mechanism of plant cold adaptation from the following three perspectives: (1) Microbiome community structure and their unique taxa of alpine and subalpine plants; (2) The role of alpine and subalpine plant microbiome in plant adaptation to cold stress; (3) Mechanisms by which the microbiome of alpine and subalpine plants promotes plant adaptation to low-temperature environments. Finally, we also discussed the future application of high-throughput technologies in the development of microbial communities for alpine and subalpine plants. The existing knowledge could improve our understanding of the important role of microbes in plant adaptation to harsh environments. In addition, perspective further studies on microbes' function confirmation and microbial manipulations in microbiome engineering were also discussed.
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Affiliation(s)
- Mengyan Hou
- Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, No.151, Malianwa North Road, Haidian District, Beijing, 100193, People's Republic of China
| | - Chunyan Leng
- Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, No.151, Malianwa North Road, Haidian District, Beijing, 100193, People's Republic of China
| | - Jun Zhu
- Xinjiang Institute of Chinese and Ethnic Medicine, Urumqi, 830002, People's Republic of China
| | - Mingshu Yang
- Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, No.151, Malianwa North Road, Haidian District, Beijing, 100193, People's Republic of China
| | - Yifei Yin
- Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, No.151, Malianwa North Road, Haidian District, Beijing, 100193, People's Republic of China
| | - Yongmei Xing
- Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, No.151, Malianwa North Road, Haidian District, Beijing, 100193, People's Republic of China
| | - Juan Chen
- Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, No.151, Malianwa North Road, Haidian District, Beijing, 100193, People's Republic of China.
- School of Pharmacy, Shandong Second Medical University, Weifang, 261053, People's Republic of China.
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Zhao X, Meng T, Jin S, Ren K, Cai Z, Cai B, Li S. The Salinity Survival Strategy of Chenopodium quinoa: Investigating Microbial Community Shifts and Nitrogen Cycling in Saline Soils. Microorganisms 2023; 11:2829. [PMID: 38137973 PMCID: PMC10745458 DOI: 10.3390/microorganisms11122829] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2023] [Revised: 11/07/2023] [Accepted: 11/16/2023] [Indexed: 12/24/2023] Open
Abstract
Quinoa is extensively cultivated for its nutritional value, and its exceptional capacity to endure elevated salt levels presents a promising resolution to the agricultural quandaries posed by salinity stress. However, limited research has been dedicated to elucidating the correlation between alterations in the salinity soil microbial community and nitrogen transformations. To scrutinize the underlying mechanisms behind quinoa's salt tolerance, we assessed the changes in microbial community structure and the abundance of nitrogen transformation genes across three distinct salinity thresholds (1 g·kg-1, 3 g·kg-1, and 6 g·kg-1) at two distinct time points (35 and 70 days). The results showed the positive effect of quinoa on the soil microbial community structure, including changes in key populations and its regulatory role in soil nitrogen cycling under salt stress. Choroflexi, Acidobacteriota, and Myxococcota were inhibited by increased salinity, while the relative abundance of Bacteroidota increased. Proteobacteria and Actinobacteria showed relatively stable abundances across time and salinity levels. Quinoa possesses the ability to synthesize or modify the composition of keystone species or promote the establishment of highly complex microbial networks (modularity index > 0.4) to cope with fluctuations in external salt stress environments. Furthermore, quinoa exhibited nitrogen (N) cycling by downregulating denitrification genes (nirS, nosZ), upregulating nitrification genes (Archaeal amoA (AOA), Bacterial amoA (AOB)), and stabilizing nitrogen fixation genes (nifH) to absorb nitrate-nitrogen (NO3-_N). This study paves the way for future research on regulating quinoa, promoting soil microbial communities, and nitrogen transformation in saline environments.
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Affiliation(s)
- Xuli Zhao
- College of Agricultural Science and Engineering, Hohai University, No. 8 Focheng West Road, Nanjing 211100, China
| | - Tianzhu Meng
- College of Agricultural Science and Engineering, Hohai University, No. 8 Focheng West Road, Nanjing 211100, China
| | - Shenghan Jin
- College of Agricultural Science and Engineering, Hohai University, No. 8 Focheng West Road, Nanjing 211100, China
| | - Kaixing Ren
- College of Agricultural Science and Engineering, Hohai University, No. 8 Focheng West Road, Nanjing 211100, China
| | - Zhe Cai
- College of Agricultural Science and Engineering, Hohai University, No. 8 Focheng West Road, Nanjing 211100, China
| | - Bo Cai
- College of Agricultural Science and Engineering, Hohai University, No. 8 Focheng West Road, Nanjing 211100, China
| | - Saibao Li
- College of Water Resources and Civil Engineering, Tibet Agricultural and Animal Husbandry University, No. 8 Xueyuan Road, Linzhi 860000, China
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