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Kuzyk SB, Messner K, Plouffe J, Ma X, Wiens K, Yurkov V. Diverse aerobic anoxygenic phototrophs synthesize bacteriochlorophyll in oligotrophic rather than copiotrophic conditions, suggesting ecological niche. Environ Microbiol 2023; 25:2653-2665. [PMID: 37604501 DOI: 10.1111/1462-2920.16482] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2023] [Accepted: 08/01/2023] [Indexed: 08/23/2023]
Abstract
While investigating aerobic anoxygenic phototrophs (AAP) from Lake Winnipeg's bacterial community, over 500 isolates were obtained. Relatives of 20 different species were examined simultaneously, identifying conditions for optimal growth or pigment production to determine features that may unify this group of phototrophs. All were distributed among assorted α-Proteobacterial families including Erythrobacteraceae, Sphingomonadaceae, Sphingosinicellaceae, Acetobacteraceae, Methylobacteriaceae, and Rhodobacteraceae. Major phenotypic characteristics matched phylogenetic association, including pigmentation, morphology, metal transformations, tolerances, lipid configurations, and enzyme activities, which distinctly separated each taxonomic family. While varying pH and temperature had a limited independent impact on pigment production, bacteriochlorophyll synthesis was distinctly promoted under low nutrient conditions, whereas copiotrophy repressed its production but enhanced carotenoid yield. New AAP diversity was also reported by revealing strains related to non-phototrophic Rubellimicrobium and Sphingorhabdus, as well as spread throughout Roseomonas, Sphingomonas, and Methylobacterium/Methylorubrum, which previously only had a few known photosynthetic members. This study exemplified the overwhelming diversity of AAP in a single aquatic environment, confirming cultivation continues to be of importance in microbial ecology to discover functionality in both new and previously reported cohorts of bacteria as specific laboratory conditions were required to promote aerobic bacteriochlorophyll production.
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Affiliation(s)
- Steven B Kuzyk
- Department of Microbiology, University of Manitoba, Winnipeg, Manitoba, Canada
| | - Katia Messner
- Department of Microbiology, University of Manitoba, Winnipeg, Manitoba, Canada
| | - Jocelyn Plouffe
- Department of Microbiology, University of Manitoba, Winnipeg, Manitoba, Canada
| | - Xiao Ma
- Department of Microbiology, University of Manitoba, Winnipeg, Manitoba, Canada
| | - Kaitlyn Wiens
- Department of Microbiology, University of Manitoba, Winnipeg, Manitoba, Canada
| | - Vladimir Yurkov
- Department of Microbiology, University of Manitoba, Winnipeg, Manitoba, Canada
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Kuzyk SB, Ma X, Yurkov V. Seasonal Dynamics of Lake Winnipeg’s Microbial Communities Reveal Aerobic Anoxygenic Phototrophic Populations Coincide with Sunlight Availability. Microorganisms 2022; 10:microorganisms10091690. [PMID: 36144291 PMCID: PMC9501198 DOI: 10.3390/microorganisms10091690] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2022] [Revised: 08/12/2022] [Accepted: 08/19/2022] [Indexed: 11/30/2022] Open
Abstract
In this first comprehensive study of Lake Winnipeg’s microbial communities, limnetic and littoral euphotic zones were examined during each season from 2016 through 2020. Classical cultivation and modern high-throughput sequencing techniques provided quantification and identification of key phototrophic populations, including aerobic anoxygenic phototrophs (AAP). Annual dynamics found total heterotrophs reached 4.23 × 106 CFU/g in littoral sands, and 7.69 × 104 CFU/mL in summer littoral waters on oligotrophic media, higher counts than for copiotrophic compositions. Limnetic numbers inversely dipped to 4.34 × 103 CFU/mL midsummer. Cultured AAP did not follow heterotrophic trends, instead peaking during the spring in both littoral and limnetic waters as 19.1 and 4.7% of total copiotrophs, or 3.9 and 4.9% of oligotrophs, decreasing till autumn each year. Complementary observations came from environmental 16S V4 rRNA gene analysis, as AAP made up 1.49 and 1.02% of the littoral and limnetic sequenced communities in the spring, declining with seasonal progression. Spatial and temporal fluctuations of microbes compared to environmental factors exposed photosynthetic populations to independently and regularly fluctuate in the ecosystem. Oxygenic phototrophic numbers expectantly matched the midsummer peak of Chl a and b, oxygenic photosynthesis related carbon fixation, and water temperature. Independently, AAP particularly colonized spring littoral areas more than limnetic, and directly corresponded to habitat conditions that specifically promoted growth: the requirement of light and organic material.
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Pandey G, Bajpai S. Accessing the environmental impact of tellurium metal. PHYSICAL SCIENCES REVIEWS 2022. [DOI: 10.1515/psr-2021-0113] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
Tellurium is gaining technical significance because of being a vital constituent for the growth of green-energy products and technologies. Owing to its unique property of interchangeable oxidation states it has a tricky though interesting chemistry with basically unidentified environmental effects. The understanding of environmental actions of tellurium has significant gaps for instance, its existence and effects in various environmental sections related to mining, handling and removal and disposal methods. To bridge this gap it is required to assess its distinctive concentrations in the environment together with proper knowledge of its environmental chemistry. This in turn significantly requires developing systematic diagnostic schemes which are sensitive enough to present statistics in the concentrations which are environmentally relevant. The broad assessment of available statistics illustrates that tellurium is being found in a very scarce concentrations in various environmental sections. Very less information is available for the presence and effects of tellurium in air and natural water resources. Various soil and lake sediment analysis statistics indicate towards the presence of tellurium in soil owing to release of dust, ash and slag during mining and manufacturing practices. Computing the release and behavior of tellurium in environment needs a thorough assessment of its anthropogenic life cycle which in turn will facilitate information about its existing and prospective release in the environment, and will aid to handle the metal more sensibly.
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Affiliation(s)
- Garima Pandey
- Department of Chemistry SRM Institiute of Science and Technology , Delhi NCR Campus , Modinagar 201204, Ghaziabad , Uttar Pradesh , India
| | - Sangeeta Bajpai
- Applied Sciences , Amity University - Lucknow Campus , Malhour , Lucknow , 227028 , Uttar Pradesh , India
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Tellurium: A Rare Element with Influence on Prokaryotic and Eukaryotic Biological Systems. Int J Mol Sci 2021; 22:ijms22115924. [PMID: 34072929 PMCID: PMC8199023 DOI: 10.3390/ijms22115924] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2021] [Revised: 05/27/2021] [Accepted: 05/28/2021] [Indexed: 11/16/2022] Open
Abstract
Metalloid tellurium is characterized as a chemical element belonging to the chalcogen group without known biological function. However, its compounds, especially the oxyanions, exert numerous negative effects on both prokaryotic and eukaryotic organisms. Recent evidence suggests that increasing environmental pollution with tellurium has a causal link to autoimmune, neurodegenerative and oncological diseases. In this review, we provide an overview about the current knowledge on the mechanisms of tellurium compounds' toxicity in bacteria and humans and we summarise the various ways organisms cope and detoxify these compounds. Over the last decades, several gene clusters conferring resistance to tellurium compounds have been identified in a variety of bacterial species and strains. These genetic determinants exhibit great genetic and functional diversity. Besides the existence of specific resistance mechanisms, tellurium and its toxic compounds interact with molecular systems, mediating general detoxification and mitigation of oxidative stress. We also discuss the similarity of tellurium and selenium biochemistry and the impact of their compounds on humans.
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Kuzyk SB, Hughes E, Yurkov V. Discovery of Siderophore and Metallophore Production in the Aerobic Anoxygenic Phototrophs. Microorganisms 2021; 9:microorganisms9050959. [PMID: 33946921 PMCID: PMC8146977 DOI: 10.3390/microorganisms9050959] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2021] [Revised: 04/20/2021] [Accepted: 04/28/2021] [Indexed: 11/16/2022] Open
Abstract
Aerobic anoxygenic phototrophs have been isolated from a rich variety of environments including marine ecosystems, freshwater and meromictic lakes, hypersaline springs, and biological soil crusts, all in the hopes of understanding their ecological niche. Over 100 isolates were chosen for this study, representing 44 species from 27 genera. Interactions with Fe3+ and other metal(loid) cations such as Mg2+, V3+, Mn2+, Co2+, Ni2+, Cu2+, Zn2+, Se4+ and Te2+ were tested using a chromeazurol S assay to detect siderophore or metallophore production, respectively. Representatives from 20 species in 14 genera of α-Proteobacteria, or 30% of strains, produced highly diffusible siderophores that could bind one or more metal(loid)s, with activity strength as follows: Fe > Zn > V > Te > Cu > Mn > Mg > Se > Ni > Co. In addition, γ-proteobacterial Chromocurvus halotolerans, strain EG19 excreted a brown compound into growth medium, which was purified and confirmed to act as a siderophore. It had an approximate size of ~341 Da and drew similarities to the siderophore rhodotorulic acid, a member of the hydroxamate group, previously found only among yeasts. This study is the first to discover siderophore production to be widespread among the aerobic anoxygenic phototrophs, which may be another key method of metal(loid) chelation and potential detoxification within their environments.
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Complete Genome Sequence of Sandaracinobacter sp. Strain M6, Isolated from a Rocky Mountain in China. Microbiol Resour Announc 2021; 10:10/1/e01415-20. [PMID: 33414331 PMCID: PMC8407754 DOI: 10.1128/mra.01415-20] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
We report the complete genome sequence of Sandaracinobacter sp. strain M6 obtained by Oxford Nanopore and Illumina sequencing. The approximately 3.4 Mb genome sequence with a GC content of 67.65% provides essential data for future taxonomic studies and information for further investigating the metabolic characteristics of aerobic anoxygenic phototrophs. We report the complete genome sequence of Sandaracinobacter sp. strain M6 obtained by Oxford Nanopore and Illumina sequencing. The approximately 3.4-Mb genome sequence with a GC content of 67.65% provides essential data for future taxonomic studies and information for further investigating the metabolic characteristics of aerobic anoxygenic phototrophs.
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Extreme Environments and High-Level Bacterial Tellurite Resistance. Microorganisms 2019; 7:microorganisms7120601. [PMID: 31766694 PMCID: PMC6955997 DOI: 10.3390/microorganisms7120601] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2019] [Revised: 11/19/2019] [Accepted: 11/20/2019] [Indexed: 01/10/2023] Open
Abstract
Bacteria have long been known to possess resistance to the highly toxic oxyanion tellurite, most commonly though reduction to elemental tellurium. However, the majority of research has focused on the impact of this compound on microbes, namely E. coli, which have a very low level of resistance. Very little has been done regarding bacteria on the other end of the spectrum, with three to four orders of magnitude greater resistance than E. coli. With more focus on ecologically-friendly methods of pollutant removal, the use of bacteria for tellurite remediation, and possibly recovery, further highlights the importance of better understanding the effect on microbes, and approaches for resistance/reduction. The goal of this review is to compile current research on bacterial tellurite resistance, with a focus on high-level resistance by bacteria inhabiting extreme environments.
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Maltman C, Yurkov V. Bioremediation potential of bacteria able to reduce high levels of selenium and tellurium oxyanions. Arch Microbiol 2018; 200:1411-1417. [DOI: 10.1007/s00203-018-1555-6] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2018] [Revised: 07/11/2018] [Accepted: 07/17/2018] [Indexed: 11/24/2022]
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Tellurite and Tellurate Reduction by the Aerobic Anoxygenic Phototroph Erythromonas ursincola, Strain KR99 Is Carried out by a Novel Membrane Associated Enzyme. Microorganisms 2017; 5:microorganisms5020020. [PMID: 28422063 PMCID: PMC5488091 DOI: 10.3390/microorganisms5020020] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2017] [Revised: 04/12/2017] [Accepted: 04/16/2017] [Indexed: 11/17/2022] Open
Abstract
Erythromonas ursincola, strain KR99 isolated from a freshwater thermal spring of Kamchatka Island in Russia, resists and reduces very high levels of toxic tellurite under aerobic conditions. Reduction is carried out by a constitutively expressed membrane associated enzyme, which was purified and characterized. The tellurite reductase has a molecular weight of 117 kDa, and is comprised of two subunits (62 and 55 kDa) in a 1:1 ratio. Optimal activity occurs at pH 7.0 and 28 °C. Tellurite reduction has a Vmax of 5.15 µmol/min/mg protein and a Km of 3.36 mM. The enzyme can also reduce tellurate with a Vmax and Km of 1.08 µmol/min/mg protein and 1.44 mM, respectively. This is the first purified membrane associated Te oxyanion reductase.
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Hughes E, Head B, Maltman C, Piercey-Normore M, Yurkov V. Aerobic anoxygenic phototrophs in gold mine tailings in Nopiming Provincial Park, Manitoba, Canada. Can J Microbiol 2017; 63:212-218. [PMID: 28194995 DOI: 10.1139/cjm-2016-0448] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
A sampling trip to Central Gold Mine, Nopiming Provincial Park, Canada, was taken in September 2011. Abundance, distribution, and physiology of aerobic anoxygenic phototrophs (AAP) from 4 locations were studied. Enumeration revealed 14.6% of culturable microbes were AAP. Five strains (NM4.16, NM4.18, C4, C9, C11) were chosen for analysis. All grow best on complex media without vitamin requirements and with an optimal pH 7.0-8.0, with strain C4 preferring pH 6.0. Strain NM4.18 tolerates the highest pH 11.0. Optimal temperature for all is 28 °C (range of 2-37 °C except NM4.16, which survives 45 °C). Strains C9, C11, and NM4.18 grew in 1.0%, 2.0%, and 5.0% NaCl, respectively, while NM4.16 and C4 grew only without NaCl. Isolates were all highly resistant to toxic metal(oid) oxides: tellurite (1500 μg/mL, all), tellurate (1500 μg/mL, C11), selenite (5000 μg/mL, C9, C11, and NM4.18), selenate (1000 μg/mL, C9 and C11), and orthometavanadate and metavanadate (5000 μg/mL, C11 and NM4.18). They could reduce tellurite to the less toxic elemental tellurium. Full 16S rRNA gene sequencing revealed all strains are Alphaproteobacteria, with C4 and NM4.16 closely related to Porphyrobacter colymbi (99.4% and 99.7% sequence similarity, respectively), C9 to Brevundimonas variabilis (99.1%), C11 to Brevundimonas bacteroides (98.6%), and NM4.18 to Erythromonas ursincola (98.5%).
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Affiliation(s)
- Elizabeth Hughes
- a Department of Microbiology, University of Manitoba, Winnipeg, MB R3T 2N2, Canada
| | - Breanne Head
- a Department of Microbiology, University of Manitoba, Winnipeg, MB R3T 2N2, Canada
| | - Chris Maltman
- a Department of Microbiology, University of Manitoba, Winnipeg, MB R3T 2N2, Canada
| | | | - Vladimir Yurkov
- a Department of Microbiology, University of Manitoba, Winnipeg, MB R3T 2N2, Canada
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