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Jalloh AA, Khamis FM, Yusuf AA, Subramanian S, Mutyambai DM. Long-term push-pull cropping system shifts soil and maize-root microbiome diversity paving way to resilient farming system. BMC Microbiol 2024; 24:92. [PMID: 38500045 PMCID: PMC10946131 DOI: 10.1186/s12866-024-03238-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2023] [Accepted: 02/26/2024] [Indexed: 03/20/2024] Open
Abstract
BACKGROUND The soil biota consists of a complex assembly of microbial communities and other organisms that vary significantly across farming systems, impacting soil health and plant productivity. Despite its importance, there has been limited exploration of how different cropping systems influence soil and plant root microbiomes. In this study, we investigated soil physicochemical properties, along with soil and maize-root microbiomes, in an agroecological cereal-legume companion cropping system known as push-pull technology (PPT). This system has been used in agriculture for over two decades for insect-pest management, soil health improvement, and weed control in sub-Saharan Africa. We compared the results with those obtained from maize-monoculture (Mono) cropping system. RESULTS The PPT cropping system changed the composition and diversity of soil and maize-root microbial communities, and led to notable improvements in soil physicochemical characteristics compared to that of the Mono cropping system. Distinct bacterial and fungal genera played a crucial role in influencing the variation in microbial diversity within these cropping systems. The relative abundance of fungal genera Trichoderma, Mortierella, and Bionectria and bacterial genera Streptomyces, RB41, and Nitrospira were more enriched in PPT. These microbial communities are associated with essential ecosystem services such as plant protection, decomposition, carbon utilization, bioinsecticides production, nitrogen fixation, nematode suppression, phytohormone production, and bioremediation. Conversely, pathogenic associated bacterial genus including Bryobacter were more enriched in Mono-root. Additionally, the Mono system exhibited a high relative abundance of fungal genera such as Gibberella, Neocosmospora, and Aspergillus, which are linked to plant diseases and food contamination. Significant differences were observed in the relative abundance of the inferred metabiome functional protein pathways including syringate degradation, L-methionine biosynthesis I, and inosine 5'-phosphate degradation. CONCLUSION Push-pull cropping system positively influences soil and maize-root microbiomes and enhances soil physicochemical properties. This highlights its potential for agricultural and environmental sustainability. These findings contribute to our understanding of the diverse ecosystem services offered by this cropping system where it is practiced regarding the system's resilience and functional redundancy. Future research should focus on whether PPT affects the soil and maize-root microbial communities through the release of plant metabolites from the intercrop root exudates or through the alteration of the soil's nutritional status, which affects microbial enzymatic activities.
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Affiliation(s)
- Abdul A Jalloh
- International Centre of Insect Physiology and Ecology, P.O. Box 30772-00100, Nairobi, Kenya
- Department of Zoology and Entomology, University of Pretoria, Private Bag x20 Hatfield, Pretoria, South Africa
| | - Fathiya Mbarak Khamis
- International Centre of Insect Physiology and Ecology, P.O. Box 30772-00100, Nairobi, Kenya
| | - Abdullahi Ahmed Yusuf
- Department of Zoology and Entomology, University of Pretoria, Private Bag x20 Hatfield, Pretoria, South Africa
- Forestry and Agricultural Biotechnology Institute, University of Pretoria, Private Bag x20 Hatfield, Pretoria, South Africa
| | - Sevgan Subramanian
- International Centre of Insect Physiology and Ecology, P.O. Box 30772-00100, Nairobi, Kenya
| | - Daniel Munyao Mutyambai
- International Centre of Insect Physiology and Ecology, P.O. Box 30772-00100, Nairobi, Kenya.
- Department of Life Sciences, South Eastern Kenya University, P.O. Box 170-90200, Kitui, Kenya.
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Zhang KT, Huang ZP, Xu XR, Li SH, Xu YX, Zhao Q, Zhang XM. Two new diketopiperazines from the Cordyceps fungus Samsoniella sp. XY4. J Antibiot (Tokyo) 2023; 76:735-740. [PMID: 37789127 DOI: 10.1038/s41429-023-00662-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2022] [Revised: 09/18/2023] [Accepted: 09/21/2023] [Indexed: 10/05/2023]
Abstract
Two new diketopiperazines, namely samsoniellain A (1) and samsoniellain B (2), together with two known compounds (3, 4) were isolated from Cordyceps fungus Samsoniella sp. XY4. The planar structures of 1 and 2 were determined by HRESIMS, 1D and 2D NMR spectroscopy. The absolute configurations of 1 and 2 were determined by comparison of quantum chemical TDDFT calculated and experimental ECD spectra. Results of antimicrobial activity indicated that compound 2 showed weak bacteriostatic activities against S. typhimurium χ 8956, H. influenza ATCC 10211, MRSA 2024 with the MIC values of 128, 256, and 256 μg ml-1, respectively. This is the first report about secondary metabolites of Samsoniella sp.
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Affiliation(s)
- Ke-Tao Zhang
- School of Basic Medical Science, School of Chinese Medicine, Yunnan University of Chinese Medicine, Kun Ming, 650500, Yunnan, China
| | - Zhi-Pu Huang
- School of Basic Medical Science, School of Chinese Medicine, Yunnan University of Chinese Medicine, Kun Ming, 650500, Yunnan, China
| | - Xiao-Rong Xu
- School of Basic Medical Science, School of Chinese Medicine, Yunnan University of Chinese Medicine, Kun Ming, 650500, Yunnan, China
| | - Si-Heng Li
- School of Basic Medical Science, School of Chinese Medicine, Yunnan University of Chinese Medicine, Kun Ming, 650500, Yunnan, China
| | - Yu-Xiao Xu
- School of Basic Medical Science, School of Chinese Medicine, Yunnan University of Chinese Medicine, Kun Ming, 650500, Yunnan, China
| | - Qing Zhao
- School of Basic Medical Science, School of Chinese Medicine, Yunnan University of Chinese Medicine, Kun Ming, 650500, Yunnan, China.
| | - Xiao-Mei Zhang
- School of Basic Medical Science, School of Chinese Medicine, Yunnan University of Chinese Medicine, Kun Ming, 650500, Yunnan, China.
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Hajek AE, Everest TA, Clifton EH. Accumulation of Fungal Pathogens Infecting the Invasive Spotted Lanternfly, Lycorma delicatula. INSECTS 2023; 14:912. [PMID: 38132586 PMCID: PMC10871119 DOI: 10.3390/insects14120912] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2023] [Revised: 11/21/2023] [Accepted: 11/24/2023] [Indexed: 12/23/2023]
Abstract
In the eastern United States, populations of the invasive spotted lanternfly, Lycorma delicatula, are abundant and spreading. Four species of naturally occurring entomopathogenic fungi have previously been reported as infecting these planthoppers, with two of these causing epizootics. Nymphal- and adult-stage lanternflies in Pennsylvania and New York were surveyed for entomopathogenic fungal infections from October 2021 to November 2023, and assays were conducted to confirm the pathogenicity of species that were potentially pathogenic. Beauveria bassiana was the most abundant pathogen, but we report an additional 15 previously unreported species of entomopathogenic fungi infecting spotted lanternflies, all in the order Hypocreales (Ascomycota). The next most common pathogens were Fusarium fujikuroi and Sarocladium strictum. While infection prevalence by species was often low, probably impacted to some extent by the summer drought in 2022, together these pathogens caused a total of 6.7% mortality. A significant trend was evident over time within a season, with low levels of infection among nymphs and higher infection levels in mid- and late-stage adults, the stages when mating and oviposition occur.
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Affiliation(s)
- Ann E. Hajek
- Department of Entomology, Cornell University, Ithaca, NY 14853, USA; (T.A.E.); (E.H.C.)
| | - Thomas A. Everest
- Department of Entomology, Cornell University, Ithaca, NY 14853, USA; (T.A.E.); (E.H.C.)
| | - Eric H. Clifton
- Department of Entomology, Cornell University, Ithaca, NY 14853, USA; (T.A.E.); (E.H.C.)
- Research & Development, BioWorks Inc., Victor, NY 14564, USA
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Tong C, Li T, Luo S, Chen R, Chen S, Wei J, Qing Y, Qin S, Pan G, Li C, Zhou Z. Detection of the pathogenic fungus Cordyceps farinosa in the Thitarodes armoricanus soil-rearing environment based on nucleic acid targets. Can J Microbiol 2023; 69:136-145. [PMID: 36638365 DOI: 10.1139/cjm-2022-0165] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
Cordyceps farinosa, an entomopathogenic fungus, infects and leads to high mortality of Thitarodes armoricanus larvae, which die soon after the infection of C. farinose, usually before the colonization of Ophiocordyceps sinensis owing to competitive inhibition and fruiting body formation. Therefore, monitoring C. farinosa in the O. sinensis cultivation environment is critical for minimizing the C. farinosa infection-induced losses. In this study, we initially designed a PCR primer pair (Tar-1F/Tar-1R) through open reading frame prediction and homology comparison of the C. farinosa genome sequence. This primer pair can detect both C. farinosa and Samsoniella hepiali. To further distinguish, primers (ITS5-172/ITS4-95) were then designed to selectively amplify the large ribosomal subunit sequences in the C. farinosa genome. All these primers were applied in combination for detection of C. farinosa in soil samples. The sensitivity reached a detection limit of 1 × 106 spores/g soil. In addition, these primers can detect the presence of C. farinosa in dead T. armoricanus larval samples. This newly established rapid detection method provides important information for C. farinosa control during O. sinensis cultivation.
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Affiliation(s)
- Chaoqun Tong
- State Key Laboratory of Silkworm Genome Biology, Chongqing Key Laboratory of Microsporidia Infection and Prevention, Southwest University, Chongqing 400715, China
| | - Tian Li
- State Key Laboratory of Silkworm Genome Biology, Chongqing Key Laboratory of Microsporidia Infection and Prevention, Southwest University, Chongqing 400715, China
| | - Shisui Luo
- Taiji Medical Research Institute, Chongqing 401147, China
| | - Ruoni Chen
- Taiji Medical Research Institute, Chongqing 401147, China
| | - Shijiang Chen
- Chongqing Academy of Chinese Materia Medica, Chongqing 400065, China
| | - Junhong Wei
- State Key Laboratory of Silkworm Genome Biology, Chongqing Key Laboratory of Microsporidia Infection and Prevention, Southwest University, Chongqing 400715, China
| | - Yuling Qing
- Taiji Medical Research Institute, Chongqing 401147, China
| | - Shaorong Qin
- Taiji Medical Research Institute, Chongqing 401147, China
| | - Guoqing Pan
- State Key Laboratory of Silkworm Genome Biology, Chongqing Key Laboratory of Microsporidia Infection and Prevention, Southwest University, Chongqing 400715, China
| | - Chunfeng Li
- State Key Laboratory of Silkworm Genome Biology, Chongqing Key Laboratory of Microsporidia Infection and Prevention, Southwest University, Chongqing 400715, China
| | - Zeyang Zhou
- State Key Laboratory of Silkworm Genome Biology, Chongqing Key Laboratory of Microsporidia Infection and Prevention, Southwest University, Chongqing 400715, China.,College of Life Sciences, Chongqing Normal University, Chongqing 401331, China
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Sikandar A, Jia L, Wu H, Yang S. Meloidogyne enterolobii risk to agriculture, its present status and future prospective for management. FRONTIERS IN PLANT SCIENCE 2023; 13:1093657. [PMID: 36762171 PMCID: PMC9902769 DOI: 10.3389/fpls.2022.1093657] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/09/2022] [Accepted: 12/05/2022] [Indexed: 06/18/2023]
Abstract
Meloidogyne enterolobii, commonly known as guava root-knot nematode, poses risk due to its widespread distribution and extensive host range. This species is recognized as the most virulent root-knot nematode (RKN) species because it can emerge and breed in plants that have resistance to other tropical RKNs. They cause chlorosis, stunting, and yield reductions in host plants by producing many root galls. It is extremely challenging for farmers to diagnose due to the symptoms' resemblance to nutritional inadequacies. This pathogen has recently been considered a significant worldwide threat to agricultural production. It is particularly challenging to diagnose a M. enterolobii due to the similarities between this species and other RKN species. Identified using traditional morphological and molecular techniques, which is a crucial first in integrated management. Chemical control, biological control, the adoption of resistant cultivars, and cultural control have all been developed and effectively utilized to combat root-knot nematodes in the past. The object of this study was to get about the geographical distribution, host plants, symptoms, identification, and control techniques of M. enterolobii and recommend future initiatives to progress its management.
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