Minerals Determined a Special Ecological Niche and Selectively Enriched Microbial Species from Bulk Water Communities in Hot Springs

Effects of Mineral on Taxonomic and Functional Structures of Microbial Community in Tengchong Hot Springs via in-situ cultivation

Diverse mineralogical compositions occur in hot spring sediments, but the impact of minerals on the diversity and structure of microbial communities remains poorly elucidated. In this study, different mineral particles with various chemistries (i.e., hematite, biotite, K-feldspar, quartz, muscovite, aragonite, serpentine, olivine, barite, apatite, and pyrite) were incubated for ten days in two Tengchong hot springs, one alkaline (pH ~ 8.34) with a high temperature (~ 82.8 °C) (Gumingquan, short as GMQ) and one acidic (pH ~ 3.63) with a relatively low temperature (~ 43.3 °C) (Wenguangting, short as WGT), to determine the impacts of minerals on the microbial communities taxonomic and functional diversities. Results showed that the mineral-associated bacterial taxa differed from those of the bulk sediment samples in the two hot springs. The relative abundance of Proteobacteria, Euryarchaeota, and Acidobacteria increased in all minerals, indicating that these microorganisms are apt to colonize on solid surfaces. The α-diversity indices of the microbial communities on the mineral surfaces in the WGT were higher than those from the bulk sediment samples (p < 0.05), which may be caused by the stochastically adhering process on the mineral surface during 10-day incubation, different from the microbial community in sediment which has experienced long-term environmental and ecological screening. Chemoheterotrophy increased with minerals incubation, which was high in most cultured minerals (the relative contents were 5.8 - 21.4%). Most notably, the sulfate respiration bacteria (mainly related to Desulfobulbaceae and Syntrophaceae) associated with aragonite in the acidic hot spring significantly differed from other minerals, possibly due to the pH buffering effect of aragonite providing more favorable conditions for their survival and proliferation. By comparison, aragonite cultured in the alkaline hot spring highly enriched denitrifying bacteria and may have promoted the nitrogen cycle within the system. Collectively, we speculated that diverse microbes stochastically adhered on the surface of minerals in the water flows, and the physicochemical properties of minerals drove the enrichment of certain microbial communities and functional groups during the short-term incubation. Taken together, these findings thereby provide novel insights into mechanisms of community assembly and element cycling in the terrestrial hydrothermal system associated with hot springs.

Identification, biogenesis, function, and mechanism of action of circular RNAs in plants

Circular RNAs (circRNAs) are a class of single-stranded, closed RNA molecules with unique functions that are ubiquitously expressed in all eukaryotes. The biogenesis of circRNAs is regulated by specific cis-acting elements and trans-acting factors in humans and animals. circRNAs mainly exert their biological functions by acting as microRNA sponges, forming R-loops, interacting with RNA-binding proteins, or being translated into polypeptides or proteins in human and animal cells. Genome-wide identification of circRNAs has been performed in multiple plant species, and the results suggest that circRNAs are abundant and ubiquitously expressed in plants. There is emerging compelling evidence to suggest that circRNAs play essential roles during plant growth and development as well as in the responses to biotic and abiotic stress. However, compared with recent advances in human and animal systems, the roles of most circRNAs in plants are unclear at present. Here we review the identification, biogenesis, function, and mechanism of action of plant circRNAs, which will provide a fundamental understanding of the characteristics and complexity of circRNAs in plants.

Petrochemical and municipal wastewater treatment plants activated sludge each own distinct core bacteria driven by their specific incoming wastewater

Microorganisms in activated sludge from wastewater treatment plants (WWTPs) form complex networks to convert a wide variety of pollutants, thus ensuring water purification and environmental protection. In this study, activated sludge samples were collected from three full-scale WWTPs: a petrochemical WWTP (PWWTP), a municipal WWTP treating domestic wastewater (MWWTP_D), and a municipal WWTP treating a mixture of domestic wastewater and multiple industrial effluents (MWWTP_I+D). These samples were analyzed by high-throughput sequencing of 16S rRNA gene PCoA and CPCoA indicated that the samples from three WWTPs were separated, suggesting that each WWTP had unique microbiome characters (P < 0.05). This was also evidenced by the different predominant bacteria (PDB), biomarkers, and key nodes of co-occurrence network in the three WWTPs. Microorganisms with all three above mentioned characteristics were defined the core bacteria, specifically: Georgfuchsia, Thauera and GP4 in PWWTP, Phaeodactylibacter and Hyphomicrobiuml in MWWTP_D, and Otheakwangia, Terrimonas, Phenylobacterium, etc. in MWWTP_I + D. Furthermore, in accordance with the functional profile prediction, the functional groups in PWWTP metabolized aromatic compound, sulfur compounds and heavy metal typically present in petrochemical wastewater. In contrast, the microbiome in MWWTP_D was represented by the population breaking down macromolecular biodegradable organic matter and the nitrogen nutrients that constitute the vast majority of domestic wastewater pollutants. Both functional groups coexist in MWWTP_I + D. These results revealed that the specific composition of incoming wastewaters produced distinct ecological niches and modulated the ecological structure of activated sludge microbial communities in real-world WWTPs. However, the generalization of the results of this study will require further research.