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Rubiales-Martínez A, Martínez J, Mera-Jiménez E, Pérez-Flores J, Téllez-Isaías G, Miranda Ruvalcaba R, Hernández-Rodríguez M, Mancilla Percino T, Macías Pérez ME, Nicolás-Vázquez MI. Design of Two New Sulfur Derivatives of Perezone: In Silico Study Simulation Targeting PARP-1 and In Vitro Study Validation Using Cancer Cell Lines. Int J Mol Sci 2024; 25:868. [PMID: 38255943 PMCID: PMC10815500 DOI: 10.3390/ijms25020868] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2023] [Revised: 01/04/2024] [Accepted: 01/08/2024] [Indexed: 01/24/2024] Open
Abstract
Poly-ADP-Ribose Polymerase (PARP-1) is an overexpressed enzyme in several carcinomas; consequently, the design of PARP-1 inhibitors has acquired special attention. Hence, in the present study, three compounds (8-10) were produced through a Michael addition protocol, using phenylmethanethiol, 5-fluoro-2-mercaptobenzyl alcohol, and 4-mercaptophenylacetic acid, respectively, as nucleophiles and perezone as the substrate, expecting them to be convenient candidates that inhibit PARP-1. It is convenient to note that in the first stage of the whole study, the molecular dynamics (MD) simulations and the quantum chemistry studies of four secondary metabolites, i.e., perezone (1), perezone angelate (2), hydroxyperezone (3), and hydroxyperezone monoangelate (4), were performed, to investigate their interactions in the active site of PARP-1. Complementarily, a docking study of a set of eleven sulfur derivatives of perezone (5-15) was projected to explore novel compounds, with remarkable affinity to PARP-1. The molecules 8-10 provided the most adequate results; therefore, they were evaluated in vitro to determine their activity towards PARP-1, with 9 having the best IC50 (0.317 µM) value. Additionally, theoretical calculations were carried out using the density functional theory (DFT) with the hybrid method B3LYP with a set of base functions 6-311++G(d,p), and the reactivity properties were compared between the natural derivatives of perezone and the three synthesized compounds, and the obtained results exhibited that 9 has the best properties to bind with PARP-1. Finally, it is important to mention that 9 displays significant inhibitory activity against MDA-MB-231 and MCF-7 cells, i.e., 145.01 and 83.17 µM, respectively.
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Affiliation(s)
- Alejandro Rubiales-Martínez
- Departamento de Ciencias Químicas, Facultad de Estudios Superiores Cuautitlán Campo 1, Universidad Nacional Autónoma de México, Avenida 1o de Mayo s/n, Colonia Santa María las Torres, Cuautitlán Izcalli 54740, Mexico; (A.R.-M.); (J.M.); (R.M.R.)
| | - Joel Martínez
- Departamento de Ciencias Químicas, Facultad de Estudios Superiores Cuautitlán Campo 1, Universidad Nacional Autónoma de México, Avenida 1o de Mayo s/n, Colonia Santa María las Torres, Cuautitlán Izcalli 54740, Mexico; (A.R.-M.); (J.M.); (R.M.R.)
| | - Elvia Mera-Jiménez
- Laboratorio de Cultivo Celular, Escuela Superior de Medicina, Instituto Politécnico Nacional, Plan de San Luis y Díaz Mirón s/n, Ciudad de México 11340, Mexico; (E.M.-J.); (M.H.-R.)
| | - Javier Pérez-Flores
- Laboratorio de Espectrometría de Masas, Instituto de Química, Universidad Nacional Autónoma de México, Circuito Exterior s/n, Ciudad Universitaria, Alcaldía Coyoacán, Ciudad de México 04510, Mexico;
| | | | - René Miranda Ruvalcaba
- Departamento de Ciencias Químicas, Facultad de Estudios Superiores Cuautitlán Campo 1, Universidad Nacional Autónoma de México, Avenida 1o de Mayo s/n, Colonia Santa María las Torres, Cuautitlán Izcalli 54740, Mexico; (A.R.-M.); (J.M.); (R.M.R.)
| | - Maricarmen Hernández-Rodríguez
- Laboratorio de Cultivo Celular, Escuela Superior de Medicina, Instituto Politécnico Nacional, Plan de San Luis y Díaz Mirón s/n, Ciudad de México 11340, Mexico; (E.M.-J.); (M.H.-R.)
| | - Teresa Mancilla Percino
- Chemistry Department, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional, Alcaldía Gustavo A. Madero, Ciudad de México 07000, Mexico
| | - Martha Edith Macías Pérez
- Laboratorio de Cultivo Celular, Escuela Superior de Medicina, Instituto Politécnico Nacional, Plan de San Luis y Díaz Mirón s/n, Ciudad de México 11340, Mexico; (E.M.-J.); (M.H.-R.)
| | - María Inés Nicolás-Vázquez
- Departamento de Ciencias Químicas, Facultad de Estudios Superiores Cuautitlán Campo 1, Universidad Nacional Autónoma de México, Avenida 1o de Mayo s/n, Colonia Santa María las Torres, Cuautitlán Izcalli 54740, Mexico; (A.R.-M.); (J.M.); (R.M.R.)
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Abstract
Attending both the United Nations Decade of Education for Sustainable Development (2005–2014) and the United Nations 2030 Agenda for Sustainable Development, this review is presented, bearing in mind that green chemistry is essential to contribute to sustainability. This work has compiled all the information relating to green chemistry metrics, so that stakeholders can select an appropriate model, under the Green Chemistry Protocol, to evaluate how much green is a process. The review was organized considering the following convenient sections: the mass valuation, the recognition of the human health and environmental impact, metrics using computational programs (software and spreadsheets), and finally global metrics. This review was developed by consulting the principal databases, since the appearance of the first green chemistry textbook in 1998. A massive number of references were attained involving the keywords proposed below, with six languages observed, highlighted by the English language. It is important to emphasize that the 12 Principles of Green Chemistry are conceptual and offer little quantitative information. In addition, almost all the reported metric green propositions do not consider the 12 principles and few papers offer how to obtain an appropriate evaluation about the greenness of a research. In this sense, it is convenient to note that only in the Spanish literature are there two metrics that consider all the principles. Finally, to our knowledge, and after a deep search in the literature, it is the first review that covers the different features of green chemistry: mass, environment/human health. and in some cases, the use of computational programs.
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Escobedo-González R, Mendoza P, Nicolás-Vázquez MI, Hernández-Rodríguez M, Martínez J, Miranda Ruvalcaba R. A Timeline of Perezone, the First Isolated Secondary Metabolite in the New World, Covering the Period from 1852 to 2020. PROGRESS IN THE CHEMISTRY OF ORGANIC NATURAL PRODUCTS 2021; 116:67-133. [PMID: 34698946 DOI: 10.1007/978-3-030-80560-9_3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/10/2023]
Abstract
This chapter covers a sesquiterpene quinone, commonly named perezone. This molecule is documented as the first secondary metabolite isolated in crystalline form in the New World in 1852. An introduction, with its structure, the IUPAC nomenclature, and the most recent physical and spectroscopic characterizations are firstly described initially. Alongside this, a timeline and scheme with summarized information of the history of this molecule is given including the "Códice Badiano de la Cruz, 1552, highlighting the year of its isolation culminating with information up to 2005. Subsequently, in a chronological order the most recent advances of the target molecule are included and organized in subsections covering the last 15-year period 2006-2020. Finally, recently submitted contributions from the laboratory of the authors are described. It is important to note that the details provided highlight the importance and relevance of perezone.
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Affiliation(s)
- René Escobedo-González
- Department of Industrial Maintenance and Nanotechnology, Technological University of Juarez City, 32695, Ciudad Juarez, Chihuahua, Mexico
| | - Pablo Mendoza
- Department of Chemistry, Faculty of Superior Studies Cuautitlan, National Autonomous University of Mexico, Mexico State, Campus 1, 54740, Cuautitlan Izcalli, Mexico
| | - María Inés Nicolás-Vázquez
- Department of Chemistry, Faculty of Superior Studies Cuautitlan, National Autonomous University of Mexico, Mexico State, Campus 1, 54740, Cuautitlan Izcalli, Mexico
| | | | - Joel Martínez
- Chemistry Science Faculty, Autonomous University of San Luis Potosi, San Luis Potosi, 78210, Mexico.
| | - René Miranda Ruvalcaba
- Department of Chemistry, Faculty of Superior Studies Cuautitlan, National Autonomous University of Mexico, Mexico State, Campus 1, 54740, Cuautitlan Izcalli, Mexico.
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Pérez H, Miranda R, Saavedra-Leos Z, Zarraga R, Alonso P, Moctezuma E, Martínez J. Green and facile sol–gel synthesis of the mesoporous SiO2–TiO2 catalyst by four different activation modes. RSC Adv 2020; 10:39580-39588. [PMID: 35515365 PMCID: PMC9057439 DOI: 10.1039/d0ra07569h] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2020] [Accepted: 10/23/2020] [Indexed: 11/21/2022] Open
Abstract
The most environmentally friendly protocol for obtaining mesoporous SiO2–TiO2 catalysts has been sought.
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Affiliation(s)
- Héctor Pérez
- Facultad de Ciencias Químicas
- Universidad Autónoma de San Luis Potosí
- Mexico 78210
| | - René Miranda
- Facultad de Estudios Superiores Cuautitlán
- Universidad Nacional Autónoma de México
- Mexico 54740
| | - Zenaida Saavedra-Leos
- Coordinación Académica Región Altiplano
- Universidad Autónoma de San Luis Potosí
- Matehuala
- Mexico 78700
| | - Ramon Zarraga
- Departamento de Química–DCNE
- Universidad de Guanajuato
- Guanajuato
- Mexico 36050
| | - Pedro Alonso
- Facultad de Ciencias Químicas
- Universidad Autónoma de San Luis Potosí
- Mexico 78210
| | - Edgar Moctezuma
- Facultad de Ciencias Químicas
- Universidad Autónoma de San Luis Potosí
- Mexico 78210
| | - Joel Martínez
- Facultad de Ciencias Químicas
- Universidad Autónoma de San Luis Potosí
- Mexico 78210
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