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Sivaev IB. Bis(Dicarbollide) Complexes of Transition Metals: How Substituents in Dicarbollide Ligands Affect the Geometry and Properties of the Complexes. Molecules 2024; 29:3510. [PMID: 39124915 PMCID: PMC11314212 DOI: 10.3390/molecules29153510] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2024] [Revised: 07/23/2024] [Accepted: 07/23/2024] [Indexed: 08/12/2024] Open
Abstract
The interaction between different types of substituents in dicarbollide ligands and their influence on the stabilization of various rotational conformers (rotamers) of transition metal bis(dicarbollide) complexes [3,3'-M(1,2-C2B9H11)2]- are considered. It has been shown that the formation of intramolecular CH···X hydrogen bonds between dicarbollide ligands is determined by the size of the proton acceptor atom X rather than its electronegativity. Due to the stabilization of rotamers with different dipole moments, intramolecular hydrogen bonds between ligands in transition metal bis(dicarbollide) complexes can have a significant impact on the biological properties of their derivatives. In the presence of external complexing metals, weak intramolecular CH···X hydrogen bonds can be broken to form stronger X->M donor-acceptor bonds. This process is accompanied by the mutual rotation of dicarbollide ligands and can be used in sensors and molecular switches based on transition metal bis(dicarbollide) complexes.
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Affiliation(s)
- Igor B Sivaev
- A. N. Nesmeyanov Institute of Organoelement Compounds, 28 Vavilov Str., Moscow 119991, Russia
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First EOTT and BPDT-TTF based molecular conductors with [8,8′-Cl2–3,3′-Fe(1,2-C2B9H10)2]− anion – synthesis, structure, properties. J Organomet Chem 2021. [DOI: 10.1016/j.jorganchem.2021.121956] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Rotational conformation of 8,8′-dihalogenated derivatives of cobalt bis(dicarbollide) in solution. Russ Chem Bull 2021. [DOI: 10.1007/s11172-021-3146-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Asawa Y, Arsent’eva AV, Anufriev SA, Anisimov AA, Suponitsky KY, Filippov OA, Nakamura H, Sivaev IB. Synthesis of Bis(Carboranyl)amides 1,1'-μ-(CH 2NH(O)C(CH 2) n-1,2-C 2B 10H 11) 2 ( n = 0, 1) and Attempt of Synthesis of Gadolinium Bis(Dicarbollide). Molecules 2021; 26:1321. [PMID: 33801248 PMCID: PMC7958119 DOI: 10.3390/molecules26051321] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2021] [Revised: 02/23/2021] [Accepted: 02/25/2021] [Indexed: 11/17/2022] Open
Abstract
Bis(carboranyl)amides 1,1'-μ-(CH2NH(O)C(CH2)n-1,2-C2B10H11)2 (n = 0, 1) were prepared by the reactions of the corresponding carboranyl acyl chlorides with ethylenediamine. Crystal molecular structure of 1,1'-μ-(CH2NH(O)C-1,2-C2B10H11)2 was determined by single crystal X-ray diffraction. Treatment of bis(carboranyl)amides 1,1'-μ-(CH2NH(O)C(CH2)n-1,2-C2B10H11)2 with ammonium or cesium fluoride results in partial deboronation of the ortho-carborane cages to the nido-carborane ones with formation of [7,7'(8')-μ-(CH2NH(O)C(CH2)n-7,8-C2B9H11)2]2-. The attempted reaction of [7,7'(8')-μ-(CH2NH(O)CCH2-7,8-C2B9H11)2]2- with GdCl3 in 1,2-dimethoxy- ethane did not give the expected metallacarborane. The stability of different conformations of Gd-containing metallacarboranes has been estimated by quantum-chemical calculations using [3,3-μ-DME-3,3'-Gd(1,2-C2B9H11)2]- as a model. It was found that in the most stable conformation the CH groups of the dicarbollide ligands are in anti,anti-orientation with respect to the DME ligand, while any rotation of the dicarbollide ligand reduces the stability of the system. This makes it possible to rationalize the design of carborane ligands for the synthesis of gadolinium metallacarboranes on their base.
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Affiliation(s)
- Yasunobu Asawa
- School of Life Science and Technology, Tokyo Institute of Technology, Yokohama 226-8501, Japan;
| | - Aleksandra V. Arsent’eva
- A.N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, 28 Vavilov Str., 119991 Moscow, Russia; (A.V.A.); (S.A.A.); (A.A.A.); (K.Y.S.); (O.A.F.)
- Faculty of Chemical Pharmaceutical Technologies and Biomedical Products, D.I. Mendeleev Russian Chemical Technological University, 9 Miusskaya Sq., 125047 Moscow, Russia
| | - Sergey A. Anufriev
- A.N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, 28 Vavilov Str., 119991 Moscow, Russia; (A.V.A.); (S.A.A.); (A.A.A.); (K.Y.S.); (O.A.F.)
| | - Alexei A. Anisimov
- A.N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, 28 Vavilov Str., 119991 Moscow, Russia; (A.V.A.); (S.A.A.); (A.A.A.); (K.Y.S.); (O.A.F.)
- Higher Chemical College at the Russian Academy of Sciences, D.I. Mendeleev Russian Chemical Technological University, 9 Miusskaya Sq., 125047 Moscow, Russia
| | - Kyrill Yu. Suponitsky
- A.N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, 28 Vavilov Str., 119991 Moscow, Russia; (A.V.A.); (S.A.A.); (A.A.A.); (K.Y.S.); (O.A.F.)
- N.S. Kurnakov Institute of General and Inorganic Chemistry, Russian Academy of Sciences, 31 Leninsky Prosp., 119991 Moscow, Russia
| | - Oleg A. Filippov
- A.N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, 28 Vavilov Str., 119991 Moscow, Russia; (A.V.A.); (S.A.A.); (A.A.A.); (K.Y.S.); (O.A.F.)
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 16/10 Miklukho- Maklay Str., 117997 Moscow, Russia
| | - Hiroyuki Nakamura
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama, Kanagawa 226-8503, Japan;
| | - Igor B. Sivaev
- A.N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, 28 Vavilov Str., 119991 Moscow, Russia; (A.V.A.); (S.A.A.); (A.A.A.); (K.Y.S.); (O.A.F.)
- Basic Department of Chemistry of Innovative Materials and Technologies, G.V. Plekhanov Russian University of Economics, 36 Stremyannyi Line, 117997 Moscow, Russia
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Stogniy MY, Anufriev SA, Shmal'ko AV, Antropov SM, Anisimov AA, Suponitsky KY, Filippov OA, Sivaev IB. The unexpected reactivity of 9-iodo-nido-carborane: from nucleophilic substitution reactions to the synthesis of tricobalt tris(dicarbollide) Na[4,4',4''-(MeOCH 2CH 2O) 3-3,3',3''-Co 3(μ 3-O)(μ 3-S)(1,2-C 2B 9H 10) 3]. Dalton Trans 2021; 50:2671-2688. [PMID: 33533344 DOI: 10.1039/d0dt03857a] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
An unusual reactivity of 9-iodo-nido-carborane [9-I-7,8-C2B9H11]- towards nucleophiles under strong basic conditions was revealed. The nucleophilic substitution of iodine with O- and N-nucleophiles results in [9-RO-7,8-C2B9H11]- (R = H, CH2CH2OMe) and [9-L-7,8-C2B9H11] (L = Py, NEt3, Me2NCH2CH2NMe2), respectively. Reaction of [9-I-7,8-C2B9H11]- with CoCl2 in 1,2-dimethoxyethane in the presence of t-BuOK, depending on the order of addition of the reagents, leads either to a diastereomeric mixture of diiodo derivatives cobalt bis(dicarbollide) rac-[4,4'-I2-3,3'-Co(1,2-C2B9H10)2]- and meso-[4,7'-I2-3,3'-Co(1,2-C2B9H10)2]- or to the corresponding mixture of 2-methoxyethoxy derivatives rac-[4,4'-(MeOCH2CH2O)2-3,3'-Co(1,2-C2B9H10)2]- and meso-[4,7'-(MeOCH2CH2O)2-3,3'-Co(1,2-C2B9H10)2]-. In the presence of accidental admixture of sodium thiosulfate, the reactions of 9-iodo-nido-carborane and 9-(2'-methoxyethoxy)-nido-carborane with CoCl2 in 1,2-dimethoxyethane were found to produce additionally unprecedented tricobalt tris(dicarbollide) cluster Na[4,4',4''-(MeOCH2CH2O)3-3,3',3''-Co3(μ3-O)(μ3-S)(1,2-C2B9H10)3], the central fragment of which is a trigonal bipyramid with apical oxygen and sulfur atoms, and the base is formed by the Co3 triangle flanked by three dicarbollide ligands. In addition, the 2-methoxyethoxy substituents of the dicarbollide ligands chelate the sodium cation in such a way that they form a helix whose rotation direction depends on the enantiomer of the parent ligand. Thus, in this case, induction of the helical chirality of the complex occurs due to the point chirality of the initial inorganic ligand. It is worth noting that in the case of symmetrically substituted 2-methoxyethoxy derivative of nido-carborane [10-MeOCH2CH2O-7,8-C2B9H11]- only formation of the corresponding cobalt bis(dicarbollide) complex [8,8'-(MeOCH2CH2O)2-3,3'-Co(1,2-C2B9H10)2]- was observed.
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Affiliation(s)
- Marina Yu Stogniy
- A.N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, 28 Vavilov Str., Moscow, 119991, Russia.
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The First Nickelacarborane with closo-nido Structure. Molecules 2020; 25:molecules25246009. [PMID: 33353172 PMCID: PMC7767031 DOI: 10.3390/molecules25246009] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2020] [Revised: 12/16/2020] [Accepted: 12/18/2020] [Indexed: 11/17/2022] Open
Abstract
The first nickelacarborane with closo-nido structure [10′,11′-(Py)2-3,9′-Ni(1,2-C2B9H11)(7′,8′-C2B8H8)] was isolated from the reaction of nickel(IV) bis(dicarbollide) with pyridine. The molecular structure of this complex was determined by single crystal X-ray diffraction. The nickel atom is a common vertex for the closo-NiC2B9 cluster and the nido-NC2B8 cluster where it is located together with carbon atoms in the open NiC2B2 pentagonal face. It is assumed that its formation proceeds through the nucleophile-induced removal of the B(6)H vertex followed by rearrangement of the forming 11-vertex cluster, which most likely proceeds through a sequence of closing and opening reactions.
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Anufriev SA, Timofeev SV, Anisimov AA, Suponitsky KY, Sivaev IB. Bis(dicarbollide) Complexes of Transition Metals as a Platform for Molecular Switches. Study of Complexation of 8,8'-Bis(methylsulfanyl) Derivatives of Cobalt and Iron Bis(dicarbollides). Molecules 2020; 25:molecules25235745. [PMID: 33291459 PMCID: PMC7730339 DOI: 10.3390/molecules25235745] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2020] [Revised: 12/01/2020] [Accepted: 12/04/2020] [Indexed: 11/16/2022] Open
Abstract
Complexation of the 8,8'-bis(methylsulfanyl) derivatives of cobalt and iron bis(dicarbollides) [8,8'-(MeS)2-3,3'-M(1,2-C2B9H10)2]- (M = Co, Fe) with copper, silver, palladium and rhodium leads to the formation of the corresponding chelate complexes, which is accompanied by a transition from the transoid to the cisoid conformation of the bis(dicarbollide) complex. This transition is reversible and can be used in design of coordination-driven molecular switches based on transition metal bis(dicarbollide) complexes. The solid-state structures of {(Ph3P)ClPd[8,8'- (MeS)2-3,3'-Co(1,2-C2B9H10)2-κ2-S,S']} and {(COD)Rh[8,8'-(MeS)2-3,3'-Co(1,2-C2B9H10)2-κ2-S,S']} were determined by single crystal X-ray diffraction.
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Affiliation(s)
- Sergey A. Anufriev
- A.N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, 28 Vavilov Str., 119991 Moscow, Russia; (S.A.A.); (S.V.T.); (A.A.A.); (K.Y.S.)
| | - Sergey V. Timofeev
- A.N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, 28 Vavilov Str., 119991 Moscow, Russia; (S.A.A.); (S.V.T.); (A.A.A.); (K.Y.S.)
| | - Alexei A. Anisimov
- A.N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, 28 Vavilov Str., 119991 Moscow, Russia; (S.A.A.); (S.V.T.); (A.A.A.); (K.Y.S.)
- Higher Chemical College at the Russian Academy of Sciences, D.I. Mendeleev Russian Chemical Technological University, 9 Miusskaya Sq., 125047 Moscow, Russia
| | - Kyrill Yu. Suponitsky
- A.N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, 28 Vavilov Str., 119991 Moscow, Russia; (S.A.A.); (S.V.T.); (A.A.A.); (K.Y.S.)
- Basic Department of Chemistry of Innovative Materials and Technologies, G.V. Plekhanov Russian University of Economics, 36 Stremyannyi Line, 117997 Moscow, Russia
| | - Igor B. Sivaev
- A.N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, 28 Vavilov Str., 119991 Moscow, Russia; (S.A.A.); (S.V.T.); (A.A.A.); (K.Y.S.)
- Correspondence: ; Tel.: +7-916-590-2025
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Synthesis of C-Methoxy- and C,C’-Dimethoxy-ortho-carboranes. J Organomet Chem 2020. [DOI: 10.1016/j.jorganchem.2020.121523] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Stogniy MY, Kazheva ON, Chudak DM, Shilov GV, Filippov OA, Sivaev IB, Kravchenko AV, Starodub VA, Buravov LI, Bregadze VI, Dyachenko OA. Synthesis and study ofC-substituted methylthio derivatives of cobalt bis(dicarbollide). RSC Adv 2020; 10:2887-2896. [PMID: 35496089 PMCID: PMC9048485 DOI: 10.1039/c9ra08551c] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2019] [Accepted: 12/23/2019] [Indexed: 11/21/2022] Open
Abstract
The C-methylthio derivatives of cobalt bis(dicarbollide) were synthesized by reaction of anhydrous CoCl2 with nido-carborane [7-MeS-7,8-C2B9H11]− and isolated as a mixture of rac-[1,1′-(MeS)2-3,3′-Co(1,2-C2B9H10)2]− and meso-[1,2′-(MeS)2-3,3′-Co(1,2-C2B9H10)2]− isomers. The structures of both isomers were studied using DFT quantum chemical calculations. The most preferable geometry of rotamers and the stabilization energy of C-methylthio derivatives of cobalt bis(dicarbolide) were calculated. The (BEDT-TTF)[1,1′-(MeS)2-3,3′-Co(1,2-C2B9H10)2] salt was prepared and its structure was determined by single crystal X-ray diffraction. The cisoid conformation of the rac-[1,1′-(MeS)2-3,3′-Co(1,2-C2B9H10)2]− anion is stabilized by short intramolecular CH⋯S hydrogen and BH⋯S chalcogen bonds between the dicarbollide ligands, that is in good agreement with the data of quantum chemical calculations. The C-methylthio derivatives of cobalt bis(dicarbollide) rac-[1,1′-(MeS)2-3,3′-Co(1,2-C2B9H10)2]− and meso-[1,2′-(MeS)2-3,3′-Co(1,2-C2B9H10)2]− were synthesized and studied by DFT calculations and X-ray diffraction.![]()
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Affiliation(s)
- Marina Yu. Stogniy
- A. N. Nesmeyanov Institute of Organoelement Compounds
- Russian Academy of Sciences
- Moscow
- Russia
| | - Olga N. Kazheva
- Institute of Problems of Chemical Physics
- Russian Academy of Sciences
- Moscow Region
- Russia
| | | | - Gennady V. Shilov
- Institute of Problems of Chemical Physics
- Russian Academy of Sciences
- Moscow Region
- Russia
| | - Oleg A. Filippov
- A. N. Nesmeyanov Institute of Organoelement Compounds
- Russian Academy of Sciences
- Moscow
- Russia
| | - Igor B. Sivaev
- A. N. Nesmeyanov Institute of Organoelement Compounds
- Russian Academy of Sciences
- Moscow
- Russia
| | | | | | - Lev I. Buravov
- Institute of Problems of Chemical Physics
- Russian Academy of Sciences
- Moscow Region
- Russia
| | - Vladimir I. Bregadze
- A. N. Nesmeyanov Institute of Organoelement Compounds
- Russian Academy of Sciences
- Moscow
- Russia
| | - Oleg A. Dyachenko
- Institute of Problems of Chemical Physics
- Russian Academy of Sciences
- Moscow Region
- Russia
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