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Cappelletti D, Falcinelli S, Pirani F. The dawn of hydrogen and halogen bonds and their crucial role in collisional processes probing long-range intermolecular interactions. Phys Chem Chem Phys 2024; 26:7971-7987. [PMID: 38411471 DOI: 10.1039/d3cp05871a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/28/2024]
Abstract
This perspective review focuses on the results of an internally consistent study developed in the Perugia laboratory, centered on the fundamental interaction components that, at large intermolecular distances, determine the formation of weak intermolecular hydrogen (HB) and halogen (XB) bonds. This investigation exploits old and novel molecular beam scattering experiments involving several gaseous prototypical systems. In particular, we focus on the kinetic energy dependence of the total (elastic + inelastic) integral cross-sections. Of particular interest is the measure of quantum interference patterns in the energy dependence of cross-sections of targeted systems and their shift compared to that of known reference systems. We interpreted these findings as interaction energy stabilization components, such as charge transfer, σ-hole, and polar flattening, that emerge at intermediate separation distance ranges and selectively manifest for specific geometries of collision complexes. Another significant observable we discuss is the absolute value of the cross-section and its dependence on permanent multipole moments of the collisional partners. Specifically, we show how the spontaneous orientation of rotationally cold and polar molecules, due to the electric field gradient associated with the interaction between permanent multipole moments, can significantly modify the magnitude of the total cross-section, even at high values of the impact parameter. We are confident that the present results can help extend the force field formulation to various interacting systems and carry out molecular dynamics simulations under conditions of application interest.
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Affiliation(s)
- David Cappelletti
- Dipartimento di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, via Elce di Sotto 8, 06123 Perugia, Italy.
| | - Stefano Falcinelli
- Dipartimento di Ingegneria Civile ed Ambientale, Università degli Studi di Perugia, via G. Duranti 93, 06215 Perugia, Italy
| | - Fernando Pirani
- Dipartimento di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, via Elce di Sotto 8, 06123 Perugia, Italy.
- Dipartimento di Ingegneria Civile ed Ambientale, Università degli Studi di Perugia, via G. Duranti 93, 06215 Perugia, Italy
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de Jesus GCC, Costa CVS, de Macedo LGM, de Oliveira Neto PH, Pirani F, Gargano R. Electronic and dynamical properties of non-covalent diatomic aggregates formed by He with neutral and ionic Li and Be. J Mol Model 2023; 29:190. [PMID: 37249738 DOI: 10.1007/s00894-023-05512-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2023] [Accepted: 03/13/2023] [Indexed: 05/31/2023]
Abstract
CONTEXT AND RESULTS This work aims to study the influence of the absence and presence of permanent charges on the electronic and dynamical properties of the non-covalent bound diatomic systems involving He and Li, Be as neutral and ionic partners. The charge displacement results suggest that in the formation of HeLi[Formula: see text], HeBe[Formula: see text], and HeBe[Formula: see text], the neutral He atom undergoes, in the electric field of the ion, a pronounced electronic polarization, and the natural bond order theoretical approach indicates that in the formation of the molecular orbital He acts as a weak electron donor. The energy decomposition analysis provides the dispersion and induction components as the attractive leading terms controlling the stability of all systems, confirming that the formed bond substantially maintains a non-covalent nature which is also supported by the Quantum Theory of Atoms in Molecules (QTAIM) analysis. Finally, it was found that the HeLi and HeBe neutral systems are unstable under any condition, HeLi[Formula: see text] and HeBe[Formula: see text] ionic systems are stable below 317K and 138K, respectively, while the HeBe[Formula: see text] system becomes unstable only after 3045K. COMPUTATIONAL AND THEORETICAL TECHNIQUES The potential energy curves and interactions in all systems were studied theoretically based on coupled-cluster singles and doubles method with perturbative inclusion of triples CCSD(T) method with an aug-cc-pV5Z basis set. More precisely, it was determined the potential energy curves describing the stability of the HeLi, HeLi[Formula: see text], HeBe, HeBe[Formula: see text], and HeBe[Formula: see text] systems, the charge displacement within the formed adducts, the decomposition of their total interaction energy, the topological analysis of their bonds, their rovibrational energies, their spectroscopic constants and lifetimes.
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Affiliation(s)
| | - Caio Vinícius Sousa Costa
- Instituto de Física, Universidade de Brasília (UnB), P.O. Box 04455, Brasília, DF, 70919-970, Brazil
| | | | | | - Fernando Pirani
- Dipartimento di Chimica, Biologia e Biotecnologie, Università degli studi di Perugia, via Elce di Sotto 8, Perugia, Italy
- Dipartimento di Ingegneria Civile ed Ambientale, Università di Perugia, via Duranti 93, 06125, Perugia, Italy
| | - Ricardo Gargano
- Instituto de Física, Universidade de Brasília (UnB), P.O. Box 04455, Brasília, DF, 70919-970, Brazil
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A Detailed Study of Electronic and Dynamic Properties of Noble Gas–Oxygen Molecule Adducts. Molecules 2022; 27:molecules27217409. [DOI: 10.3390/molecules27217409] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2022] [Revised: 10/20/2022] [Accepted: 10/21/2022] [Indexed: 11/06/2022] Open
Abstract
In this work, the binding features of adducts formed by a noble gas (Ng = He, Ne, Ar, Kr, Xe, and Rn) atom and the oxygen molecule (O2) in its ground Σg−3, in the past target of several experimental studies, have been characterized under different theoretical points of view to clarify fundamental aspects of the intermolecular bond. For the most stable configuration of all Ng–O2 systems, binding energy has been calculated at the theory’s CCSD(T)/aug-cc-pVTZ level and compared with the experimental findings. Rovibrational energies, spectroscopic constants, and lifetime as a function of temperature were also evaluated by adopting properly formulated potential energy curves. The nature of the interaction involved was deeply investigated using charge displacement analysis, symmetry-adapted perturbation theory (SAPT), and natural bond orbital (NBO) methods. In all adducts, it was found that the charge transfer plays a minor role, although O2 is an open shell species exhibiting a positive electron affinity. Obtained results also indicate that the dispersion attraction contribution is the main responsible for the complex stability.
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Borocci S, Grandinetti F, Sanna N. Noble Gas-Silicon Cations: Theoretical Insights into the Nature of the Bond. Molecules 2022; 27:molecules27144592. [PMID: 35889465 PMCID: PMC9323317 DOI: 10.3390/molecules27144592] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2022] [Revised: 07/10/2022] [Accepted: 07/15/2022] [Indexed: 12/10/2022] Open
Abstract
The structure, stability, and bonding situation of some exemplary noble gas-silicon cations were investigated at the MP2/aVTZ level of theory. The explored species include the mono-coordinated NgSiX3+ (Ng = He-Rn; X = H, F, Cl) and NgSiF22+ (Ng = He-Rn), the di-coordinated Ar2SiX3+ (X = H, F, Cl), and the “inserted” FNgSiF2+ (Ng = Kr, Xe, Rn). The bonding analysis was accomplished by the method that we recently proposed to assay the bonding situation of noblegas compounds. The Ng-Si bonds are generally tight and feature a partial contribution of covalency. In the NgSiX3+, the degree of the Ng-Si interaction mirrors the trends of two factors, namely the polarizability of Ng that increases when going from Ng = He to Ng = Rn, and the Lewis acidity of SiX3+ that decreases in the order SiF3+ > SiH3+ > SiCl3+. For the HeSiX3+, it was also possible to catch peculiar effects referable to the small size of He. When going from the NgSiF3+ to the NgSiF22+, the increased charge on Si promotes an appreciable increase inthe Ng-Si interaction, which becomes truly covalent for the heaviest Ng. The strength of the bond also increases when going from the NgSiF3+ to the “inserted” FNgSiF2+, likely due to the cooperative effect of the adjacent F atom. On the other hand, the ligation of a second Ar atom to ArSiX3+ (X = H, F, Cl), as to form Ar2(SiX3+), produces a weakening of the bond. Our obtained data were compared with previous findings already available in the literature.
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Affiliation(s)
- Stefano Borocci
- Dipartimento per la Innovazione nei Sistemi Biologici, Agroalimentari e Forestali (DIBAF), Università della Tuscia, L.go dell’Università, s.n.c., 01100 Viterbo, Italy; (S.B.); (N.S.)
- Istituto per i Sistemi Biologici del CNR, Via Salaria, Km 29.500, 00015 Monterotondo, Italy
| | - Felice Grandinetti
- Dipartimento per la Innovazione nei Sistemi Biologici, Agroalimentari e Forestali (DIBAF), Università della Tuscia, L.go dell’Università, s.n.c., 01100 Viterbo, Italy; (S.B.); (N.S.)
- Istituto per i Sistemi Biologici del CNR, Via Salaria, Km 29.500, 00015 Monterotondo, Italy
- Correspondence: ; Tel.: +39-0761-357126
| | - Nico Sanna
- Dipartimento per la Innovazione nei Sistemi Biologici, Agroalimentari e Forestali (DIBAF), Università della Tuscia, L.go dell’Università, s.n.c., 01100 Viterbo, Italy; (S.B.); (N.S.)
- Istituto per la Scienza e Tecnologia dei Plasmi del CNR (ISTP), Via Amendola 122/D, 70126 Bari, Italy
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Borocci S, Grandinetti F, Sanna N. Noble-gas compounds: A general procedure of bonding analysis. J Chem Phys 2022; 156:014104. [PMID: 34998326 DOI: 10.1063/5.0077119] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
This paper accounts for a general procedure of bonding analysis that is, expectedly, adequate to describe any type of interaction involving the noble-gas (Ng) atoms. Building on our recently proposed classification of the Ng-X bonds (X = binding partner) [New J. Chem. 44, 15536 (2020)], these contacts are first distinguished into three types, namely, A, B, or C, based on the topology of the electron energy density H(r) and on the shape of its plotted form. Bonds of type B or C are, then, further assigned as B-loose (Bl) or B-tight (Bt) and C-loose (Cl) or C-tight (Ct) depending on the sign that H(r) takes along the Ng-X bond path located from the topological analysis of ρ(r), particularly at around the bond critical point (BCP). Any bond of type A, Bl/Bt, or Cl/Ct is, finally, assayed in terms of contribution of covalency. This is accomplished by studying the maximum, minimum, and average value of H(r) over the volume enclosed by the low-density reduced density gradient (RDG) isosurface associated with the bond (typically, the RDG isosurface including the BCP) and the average ρ(r) over the same volume. The bond assignment is also corroborated by calculating the values of quantitative indices specifically defined for the various types of interactions (A, B, or C). The generality of our taken approach should encourage its wide application to the study of Ng compounds.
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Affiliation(s)
- Stefano Borocci
- Dipartimento per la Innovazione nei sistemi Biologici, Agroalimentari e Forestali (DIBAF), Università della Tuscia, L.go dell'Università, s.n.c., 01100 Viterbo, Italy
| | - Felice Grandinetti
- Dipartimento per la Innovazione nei sistemi Biologici, Agroalimentari e Forestali (DIBAF), Università della Tuscia, L.go dell'Università, s.n.c., 01100 Viterbo, Italy
| | - Nico Sanna
- Dipartimento per la Innovazione nei sistemi Biologici, Agroalimentari e Forestali (DIBAF), Università della Tuscia, L.go dell'Università, s.n.c., 01100 Viterbo, Italy
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Falcinelli S, Vecchiocattivi F, Farrar JM, Brunetti BG, Cavalli S, Pirani F. Stereo-dynamical effects in chemi-ionization reactions of atmospheric O2 and N2 molecules promoted by collisions with Ne*(3P2,0) atoms. Chem Phys Lett 2021. [DOI: 10.1016/j.cplett.2021.138813] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Towards Quantum-Chemical Modeling of the Activity of Anesthetic Compounds. Int J Mol Sci 2021; 22:ijms22179272. [PMID: 34502179 PMCID: PMC8431746 DOI: 10.3390/ijms22179272] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2021] [Revised: 08/16/2021] [Accepted: 08/17/2021] [Indexed: 12/16/2022] Open
Abstract
The modeling of the activity of anesthetics is a real challenge because of their unique electronic and structural characteristics. Microscopic approaches relevant to the typical features of these systems have been developed based on the advancements in the theory of intermolecular interactions. By stressing the quantum chemical point of view, here, we review the advances in the field highlighting differences and similarities among the chemicals within this group. The binding of the anesthetics to their partners has been analyzed by Symmetry-Adapted Perturbation Theory to provide insight into the nature of the interaction and the modeling of the adducts/complexes allows us to rationalize their anesthetic properties. A new approach in the frame of microtubule concept and the importance of lipid rafts and channels in membranes is also discussed.
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Borocci S, Grandinetti F, Sanna N. Concerning the Role of σ-Hole in Non-Covalent Interactions: Insights from the Study of the Complexes of ArBeO with Simple Ligands. Molecules 2021; 26:molecules26154477. [PMID: 34361629 PMCID: PMC8348141 DOI: 10.3390/molecules26154477] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2021] [Revised: 07/15/2021] [Accepted: 07/20/2021] [Indexed: 11/23/2022] Open
Abstract
The structure, stability, and bonding character of some exemplary LAr and L-ArBeO (L = He, Ne, Ar, N2, CO, F2, Cl2, ClF, HF, HCl, NH3) were investigated by MP2 and coupled-cluster calculations, and by symmetry-adapted perturbation theory. The nature of the stabilizing interactions was also assayed by the method recently proposed by the authors to classify the chemical bonds in noble-gas compounds. The comparative analysis of the LAr and L-ArBeO unraveled geometric and bonding effects peculiarly related to the σ-hole at the Ar atom of ArBeO, including the major stabilizing/destabilizing role of the electrostatic interactionensuing from the negative/positive molecular electrostatic potential of L at the contact zone with ArBeO. The role of the inductive and dispersive components was also assayed, making it possible to discern the factors governing the transition from the (mainly) dispersive domain of the LAr, to the σ-hole domain of the L-ArBeO. Our conclusions could be valid for various types of non-covalent interactions, especially those involving σ-holes of respectable strength such as those occurring in ArBeO.
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Affiliation(s)
- Stefano Borocci
- Dipartimento per la Innovazione nei Sistemi Biologici, Agroalimentari e Forestali (DIBAF), Università della Tuscia, L.go dell’Università, s.n.c., 01100 Viterbo, Italy; (S.B.); (N.S.)
- Istituto per i Sistemi Biologici del CNR, Via Salaria, Km 29.500, 00015 Monterotondo, Italy
| | - Felice Grandinetti
- Dipartimento per la Innovazione nei Sistemi Biologici, Agroalimentari e Forestali (DIBAF), Università della Tuscia, L.go dell’Università, s.n.c., 01100 Viterbo, Italy; (S.B.); (N.S.)
- Istituto per i Sistemi Biologici del CNR, Via Salaria, Km 29.500, 00015 Monterotondo, Italy
- Correspondence: ; Tel.: +39-07-6135-7126
| | - Nico Sanna
- Dipartimento per la Innovazione nei Sistemi Biologici, Agroalimentari e Forestali (DIBAF), Università della Tuscia, L.go dell’Università, s.n.c., 01100 Viterbo, Italy; (S.B.); (N.S.)
- Istituto per la Scienza e Tecnologia dei Plasmi del CNR (ISTP), Via Amendola 122/D, 70126 Bari, Italy
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de Oliveira RM, Machado de Macedo LG, da Cunha TF, Pirani F, Gargano R. A Spectroscopic Validation of the Improved Lennard-Jones Model. Molecules 2021; 26:3906. [PMID: 34206733 PMCID: PMC8271504 DOI: 10.3390/molecules26133906] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2021] [Revised: 06/21/2021] [Accepted: 06/24/2021] [Indexed: 11/17/2022] Open
Abstract
The Lennard-Jones (LJ) and Improved Lennard-Jones (ILJ) potential models have been deeply tested on the most accurate CCSD(T)/CBS electronic energies calculated for some weakly bound prototype systems. These results are important to plan the correct application of such models to systems at increasing complexity. CCSD(T)/CBS ground state electronic energies were determined for 21 diatomic systems composed by the combination of the noble gas atoms. These potentials were employed to calculate the rovibrational spectroscopic constants, and the results show that for 20 of the 21 pairs the ILJ predictions agree more effectively with the experimental data than those of the LJ model. The CCSD(T)/CBS energies were also used to determine the β parameter of the ILJ form, related to the softness/hardness of the interacting partners and controlling the shape of the potential well. This information supports the experimental finding that suggests the adoption of β≈9 for most of the systems involving noble gas atoms. The He-Ne and He-Ar molecules have a lifetime of less than 1ps in the 200-500 K temperature range, indicating that they are not considered stable under thermal conditions of gaseous bulks. Furthermore, the controversy concerning the presence of a "virtual" or a "real" vibrational state in the He2 molecule is discussed.
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Affiliation(s)
| | | | | | - Fernando Pirani
- Dipartimento di Chimica, Biologia e Biotecnologie, Universitá degli studi di Perugia, via Elce di Sotto 8, 06123 Perugia, Italy;
- Istituto CNR di Scienze e Tecnologie Chimiche (CNR-SCITEC), via Elce di Sotto 8, 06123 Perugia, Italy
| | - Ricardo Gargano
- Instituto de Física, Universidade de Brasília, Brasília, DF 70910-900, Brazil
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Borocci S, Grandinetti F, Sanna N. From LAr to L-ArBeO (L = He, Ne, Ar, HF): Switching on σ-hole effects in non-covalent interactions. Chem Phys Lett 2021. [DOI: 10.1016/j.cplett.2021.138402] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Liu Z, He J, Li Y, Bai Y, Lin Q, Guo Y, Zhang F, Wu H, Jia J. Dative versus electron-sharing bonding in the isoelectronic argon compounds ArR + (R = CH 3, NH 2, OH, and F). NEW J CHEM 2021. [DOI: 10.1039/d0nj05326k] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
For the series of isoelectronic ArR+ (R = CH3, NH2, OH, and F) complexes, the nature of the bonding between Ar and R shifts from an Ar → R+ dative σ bond in ArCH3+ and ArNH2+ to an Ar+–R electron-sharing σ bond in ArOH+ and ArF+.
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Affiliation(s)
- Zhiling Liu
- School of Chemical and Material Science
- Key Laboratory of Magnetic Molecules & Magnetic Information Materials
- Ministry of Education
- Shanxi Normal University
- Linfen
| | - Jing He
- School of Chemical and Material Science
- Key Laboratory of Magnetic Molecules & Magnetic Information Materials
- Ministry of Education
- Shanxi Normal University
- Linfen
| | - Ya Li
- School of Chemical and Material Science
- Key Laboratory of Magnetic Molecules & Magnetic Information Materials
- Ministry of Education
- Shanxi Normal University
- Linfen
| | - Yan Bai
- School of Chemical and Material Science
- Key Laboratory of Magnetic Molecules & Magnetic Information Materials
- Ministry of Education
- Shanxi Normal University
- Linfen
| | - Qingyang Lin
- School of Chemical and Material Science
- Key Laboratory of Magnetic Molecules & Magnetic Information Materials
- Ministry of Education
- Shanxi Normal University
- Linfen
| | - Yurong Guo
- School of Chemical and Material Science
- Key Laboratory of Magnetic Molecules & Magnetic Information Materials
- Ministry of Education
- Shanxi Normal University
- Linfen
| | - Fuqiang Zhang
- School of Chemical and Material Science
- Key Laboratory of Magnetic Molecules & Magnetic Information Materials
- Ministry of Education
- Shanxi Normal University
- Linfen
| | - Haishun Wu
- School of Chemical and Material Science
- Key Laboratory of Magnetic Molecules & Magnetic Information Materials
- Ministry of Education
- Shanxi Normal University
- Linfen
| | - Jianfeng Jia
- School of Chemical and Material Science
- Key Laboratory of Magnetic Molecules & Magnetic Information Materials
- Ministry of Education
- Shanxi Normal University
- Linfen
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