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Lee W, Ben-Othman R, Skut P, Lee AHY, Barbosa AD, Beaman M, Currie A, Harvey NT, Kumarasinghe P, Hall RA, Potter J, Graves S, West NP, Cox AJ, Irwin PJ, Kollmann TR, Oskam CL. Molecular analysis of human tick-bitten skin yields signatures associated with distinct spatial and temporal trajectories - A proof-of-concept study. Heliyon 2024; 10:e33600. [PMID: 39071681 PMCID: PMC11283101 DOI: 10.1016/j.heliyon.2024.e33600] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2024] [Revised: 06/06/2024] [Accepted: 06/24/2024] [Indexed: 07/30/2024] Open
Abstract
Tick-associated diseases present challenges due to tridirectional interactions among host-specific responses, tick toxins and salivary proteins as well as microbes. We aimed to uncover molecular mechanisms in tick-bitten skin samples (cases) and contralateral skin samples (controls) collected simultaneously from the same participants, using spatial transcriptomics. Cases and controls analysed using NanoString GeoMx Digital Spatial Profiler identified 274 upregulated and 840 downregulated differentially expressed genes (DEGs), revealing perturbations in keratinization and immune system regulation. Samples of skin biopsies taken within 72 h post tick-bite DEGs had changes in protein metabolism and viral infection pathways as compared to samples taken 3 months post tick-bite, which instead displayed significant perturbations in several epigenetic regulatory pathways, highlighting the temporal nature of the host response following tick bites. Within-individual signatures distinguished tick-bitten samples from controls and identified between-individual signatures, offering promise for future biomarker discovery to guide prognosis and therapy.
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Affiliation(s)
- Wenna Lee
- Centre for Biosecurity and One Health, Harry Butler Institute, Murdoch University, Murdoch, WA, Australia
- Telethon Kids Institute, Perth, WA, Australia
- School of Medical, Molecular, and Forensic Sciences, College of Environmental and Life Sciences, Murdoch University, Murdoch, WA, Australia
| | | | | | - Amy Huey-Yi Lee
- Molecular Biology and Biochemistry, Simon Fraser University, British Columbia, Canada
| | - Amanda D. Barbosa
- Centre for Biosecurity and One Health, Harry Butler Institute, Murdoch University, Murdoch, WA, Australia
- School of Veterinary Medicine, College of Environmental and Life Sciences, Murdoch University, Murdoch, WA, Australia
- CAPES Foundation, Ministry of Education of Brazil, Brasilia, DF, Brazil
| | - Miles Beaman
- Faculty of Health and Medical Sciences, Pathology & Laboratory Medicine, University of Western Australia, Perth, WA, Australia
| | - Andrew Currie
- School of Medical, Molecular, and Forensic Sciences, College of Environmental and Life Sciences, Murdoch University, Murdoch, WA, Australia
- Centre for Molecular Medicine and Innovative Therapeutics, Health Futures Institute, Murdoch University, Murdoch, WA, Australia
| | - Nathan T. Harvey
- Faculty of Health and Medical Sciences, Pathology & Laboratory Medicine, University of Western Australia, Perth, WA, Australia
- Department of Anatomical Pathology, PathWest Laboratory Medicine, QEII Medical Centre, Perth, WA, Australia
| | - Prasad Kumarasinghe
- School of Medicine, University of Western Australia, Crawley, WA, Australia
- College of Science, Health, Education and Engineering, Murdoch University, Murdoch, WA, Australia
- Western Dermatology, Hollywood Medical Centre, Nedlands, WA, Australia
| | - Roy A. Hall
- Australian Infectious Diseases Research Centre, School of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia, QLD, Australia
| | - James Potter
- Australian Infectious Diseases Research Centre, School of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia, QLD, Australia
| | - Stephen Graves
- Australian Rickettsial Reference Laboratory, Barwon Health, Geelong, VIC, Australia
| | - Nicholas P. West
- School of Pharmacy and Medical Sciences, and Menzies Health Institute, Griffith University, QLD, Australia
| | - Amanda J. Cox
- School of Pharmacy and Medical Sciences, and Menzies Health Institute, Griffith University, QLD, Australia
| | - Peter J. Irwin
- School of Veterinary Medicine, College of Environmental and Life Sciences, Murdoch University, Murdoch, WA, Australia
| | | | - Charlotte L. Oskam
- Centre for Biosecurity and One Health, Harry Butler Institute, Murdoch University, Murdoch, WA, Australia
- School of Medical, Molecular, and Forensic Sciences, College of Environmental and Life Sciences, Murdoch University, Murdoch, WA, Australia
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Wang LL, Cheng Q, Newton ND, Wolfinger MT, Morgan MS, Slonchak A, Khromykh AA, Cheng TY, Parry RH. Xinyang flavivirus, from Haemaphysalis flava ticks in Henan Province, China, defines a basal, likely tick-only Orthoflavivirus clade. J Gen Virol 2024; 105:001991. [PMID: 38809251 PMCID: PMC11165663 DOI: 10.1099/jgv.0.001991] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2024] [Accepted: 05/08/2024] [Indexed: 05/30/2024] Open
Abstract
Tick-borne orthoflaviviruses (TBFs) are classified into three conventional groups based on genetics and ecology: mammalian, seabird and probable-TBF group. Recently, a fourth basal group has been identified in Rhipicephalus ticks from Africa: Mpulungu flavivirus (MPFV) in Zambia and Ngoye virus (NGOV) in Senegal. Despite attempts, isolating these viruses in vertebrate and invertebrate cell lines or intracerebral injection of newborn mice with virus-containing homogenates has remained unsuccessful. In this study, we report the discovery of Xinyang flavivirus (XiFV) in Haemaphysalis flava ticks from Xìnyáng, Henan Province, China. Phylogenetic analysis shows that XiFV was most closely related to MPFV and NGOV, marking the first identification of this tick orthoflavivirus group in Asia. We developed a reverse transcriptase quantitative PCR assay to screen wild-collected ticks and egg clutches, with absolute infection rates of 20.75 % in adult females and 15.19 % in egg clutches, suggesting that XiFV could be potentially spread through transovarial transmission. To examine potential host range, dinucleotide composition analyses revealed that XiFV, MPFV and NGOV share a closer composition to classical insect-specific orthoflaviviruses than to vertebrate-infecting TBFs, suggesting that XiFV could be a tick-only orthoflavivirus. Additionally, both XiFV and MPFV lack a furin cleavage site in the prM protein, unlike other TBFs, suggesting these viruses might exist towards a biased immature particle state. To examine this, chimeric Binjari virus with XIFV-prME (bXiFV) was generated, purified and analysed by SDS-PAGE and negative-stain transmission electron microscopy, suggesting prototypical orthoflavivirus size (~50 nm) and bias towards uncleaved prM. In silico structural analyses of the 3'-untranslated regions show that XiFV forms up to five pseudo-knot-containing stem-loops and a prototypical orthoflavivirus dumbbell element, suggesting the potential for multiple exoribonuclease-resistant RNA structures.
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Affiliation(s)
- Lan-Lan Wang
- College of Veterinary Medicine, Hunan Agricultural University, Changsha, Hunan Province, PR China
| | - Qia Cheng
- Children’s Medical Center, Hunan Provincial People’s Hospital, Changsha, PR China
| | - Natalee D. Newton
- School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, QLD, Australia
- Australian Infectious Diseases Research Centre, The University of Queensland, Brisbane, QLD, Australia
| | - Michael T. Wolfinger
- Department of Theoretical Chemistry, University of Vienna, Vienna, Austria
- Research Group Bioinformatics and Computational Biology, Faculty of Computer Science, University of Vienna, Vienna, Austria
- Bioinformatics Group, Department of Computer Science, University of Freiburg, Freiburg, Germany
- RNA Forecast e.U., Vienna, Austria
| | - Mahali S. Morgan
- School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, QLD, Australia
| | - Andrii Slonchak
- School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, QLD, Australia
- Australian Infectious Diseases Research Centre, The University of Queensland, Brisbane, QLD, Australia
| | - Alexander A. Khromykh
- School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, QLD, Australia
- Australian Infectious Diseases Research Centre, The University of Queensland, Brisbane, QLD, Australia
- GVN Center of Excellence, Australian Infectious Diseases Research Centre, Brisbane, QLD, Australia
| | - Tian-Yin Cheng
- College of Veterinary Medicine, Hunan Agricultural University, Changsha, Hunan Province, PR China
| | - Rhys H. Parry
- School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, QLD, Australia
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3
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de la Fuente J, Estrada-Peña A, Rafael M, Almazán C, Bermúdez S, Abdelbaset AE, Kasaija PD, Kabi F, Akande FA, Ajagbe DO, Bamgbose T, Ghosh S, Palavesam A, Hamid PH, Oskam CL, Egan SL, Duarte-Barbosa A, Hekimoğlu O, Szabó MPJ, Labruna MB, Dahal A. Perception of Ticks and Tick-Borne Diseases Worldwide. Pathogens 2023; 12:1258. [PMID: 37887774 PMCID: PMC10610181 DOI: 10.3390/pathogens12101258] [Citation(s) in RCA: 12] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2023] [Revised: 10/16/2023] [Accepted: 10/18/2023] [Indexed: 10/28/2023] Open
Abstract
In this comprehensive review study, we addressed the challenge posed by ticks and tick-borne diseases (TBDs) with growing incidence affecting human and animal health worldwide. Data and perspectives were collected from different countries and regions worldwide, including America, Europe, Africa, Asia, and Oceania. The results updated the current situation with ticks and TBD and how it is perceived by society with information bias and gaps. The study reinforces the importance of multidisciplinary and international collaborations to advance in the surveillance, communication and proposed future directions to address these challenges.
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Affiliation(s)
- José de la Fuente
- SaBio, Instituto de Investigación en Recursos Cinegéticos, IREC-CSIC-UCLM-JCCM, Ronda de Toledo 12, 13005 Ciudad Real, Spain;
- Department of Veterinary Pathobiology, Center for Veterinary Health Sciences, Oklahoma State University, Stillwater, OK 74078, USA
| | - Agustín Estrada-Peña
- Department of Animal Health, Faculty of Veterinary Medicine, University of Zaragoza, 50013 Zaragoza, Spain
- Research Group in Emerging Zoonoses, Instituto Agroalimentario de Aragón-IA2, Universidad de Zaragoza-CITA, 50013 Zaragoza, Spain
| | - Marta Rafael
- SaBio, Instituto de Investigación en Recursos Cinegéticos, IREC-CSIC-UCLM-JCCM, Ronda de Toledo 12, 13005 Ciudad Real, Spain;
| | - Consuelo Almazán
- Facultad de Ciencias Naturales, Universidad Autonóma de Querétaro, Avenida de las Ciencias S/N Juriquilla, Querétaro 76230, Mexico;
| | - Sergio Bermúdez
- Medical Entomology Research Department, Gorgas Memorial Institute for Health Research, Panama City 0816-02593, Panama;
| | - Abdelbaset E. Abdelbaset
- Laboratory of Parasitology, Graduate School of Infectious Diseases, Faculty of Veterinary Medicine, Hokkaido University, Kita-18, Nishi-9, Sapporo 060-0818, Hokkaido, Japan;
| | - Paul D. Kasaija
- National Livestock Resources Research Institute (NaLIRRI/NARO), Kampala P.O. Box 5704, Uganda; (P.D.K.); (F.K.)
| | - Fredrick Kabi
- National Livestock Resources Research Institute (NaLIRRI/NARO), Kampala P.O. Box 5704, Uganda; (P.D.K.); (F.K.)
| | - Foluke Adedayo Akande
- Department of Veterinary Parasitology and Entomology, College of Veterinary Medicine, Federal University of Agriculture, Abeokuta 111101, Ogun State, Nigeria;
| | - Dorcas Oluwakemi Ajagbe
- Department of Pure and Applied Zoology, College of Biological Sciences, Federal University of Agriculture, Abeokuta 111101, Ogun State, Nigeria;
| | - Timothy Bamgbose
- Department of Biological Sciences, Microbiology Unit, Faculty of Science, Kings University, Ode-Omu City 221102, Osun State, Nigeria;
| | - Srikant Ghosh
- Entomology Laboratory, Indian Veterinary Research Institute, Izatnagar, Bareilly 243122, Uttar Pradesh, India;
- IVRI-Eastern Regional Station, 37, Belgachia Road, Kolkata 700037, West Bengal, India
| | - Azhahianambi Palavesam
- Translational Research Platform for Veterinary Biologicals, Centre for Animal Health Studies, Tamil Nadu Veterinary and Animal Sciences University, Chennai 600051, Tamil Nadu, India;
| | - Penny H. Hamid
- Department of Animal Science, Universitas Sebelas Maret, Surakarta 57126, Indonesia;
| | - Charlotte L. Oskam
- School of Medical, Molecular and Forensic Sciences, Murdoch University, Perth, WA 6150, Australia; (C.L.O.); (S.L.E.)
- Centre for One Health and Biosecurity, Harry Butler Institute, Murdoch University, Perth, WA 6150, Australia;
| | - Siobhon L. Egan
- School of Medical, Molecular and Forensic Sciences, Murdoch University, Perth, WA 6150, Australia; (C.L.O.); (S.L.E.)
- Centre for One Health and Biosecurity, Harry Butler Institute, Murdoch University, Perth, WA 6150, Australia;
| | - Amanda Duarte-Barbosa
- Centre for One Health and Biosecurity, Harry Butler Institute, Murdoch University, Perth, WA 6150, Australia;
- School of Veterinary Medicine, Murdoch University, Perth, WA 6150, Australia
| | - Olcay Hekimoğlu
- Division of Ecology, Faculty of Science, Hacettepe University, Beytepe, Ankara 06800, Turkey;
| | - Matias P. J. Szabó
- Laboratório de Ixodologia, Faculdade de Medicina Veterinária, Universidade Federal de Uberlândia, Av. Pará, 1720/Campus Umuarama-Bloco 2T, Uberlândia 38400-902, Brazil;
| | - Marcelo B. Labruna
- Faculty of Veterinary Medicine and Animal Science, University of São Paulo, Sao Paulo 05508-220, Brazil;
| | - Ananta Dahal
- Department of Microbiology and Parasitology, Faculty of Animal Science, Veterinary Science and Fisheries, Agriculture and Forestry University, Chitwan 44200, Nepal;
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