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Steinecke C, Lee J, Friedman J. A standardized and efficient technique to estimate seed traits in plants with numerous small propagules. APPLICATIONS IN PLANT SCIENCES 2023; 11:e11552. [PMID: 37915429 PMCID: PMC10617364 DOI: 10.1002/aps3.11552] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/07/2023] [Revised: 08/23/2023] [Accepted: 09/04/2023] [Indexed: 11/03/2023]
Abstract
Premise Variation in seed traits is common within and among populations of plant species and often has ecological and evolutionary implications. However, due to the time-consuming nature of manual seed measurements and the level of variability in imaging techniques, quantifying and interpreting the extent of seed variation can be challenging. Methods We developed a standardized high-throughput technique to measure seed number, as well as individual seed area and color, using a derived empirical scale to constrain area in Arabidopsis thaliana, Brassica rapa, and Mimulus guttatus. We develop a specific rational model using seed area measured at various spatial scales relative to the pixel count, observing the asymptotic value of the seed area as the modeled number of pixels approaches infinity. Results We found that our model has high reliability in estimating seed traits and efficiently processes large numbers of images, facilitating the quantification of seed traits in studies with large sample sizes. Discussion This technique facilitates consistency between imaging sessions and standardizes the measurement of seed traits. These novel advances allow researchers to directly and reliably measure seed traits, which will enable tests of the ecological and evolutionary causes of their variation.
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Affiliation(s)
- Christina Steinecke
- Biology DepartmentQueen's UniversityKingstonOntarioK7L 3N6Canada
- Present address:
Department of Organismic and Evolutionary BiologyHarvard University, Cambridge, Massachusetts 02138, USA; Arnold Arboretum of Harvard UniversityBostonMassachusetts02131USA
| | - Jeremiah Lee
- Biology DepartmentQueen's UniversityKingstonOntarioK7L 3N6Canada
- Department of Geography and PlanningQueen's UniversityKingstonOntarioK7L 3N6Canada
| | - Jannice Friedman
- Biology DepartmentQueen's UniversityKingstonOntarioK7L 3N6Canada
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Kakui H, Ujino-Ihara T, Hasegawa Y, Tsurisaki E, Futamura N, Iwai J, Higuchi Y, Fujino T, Suzuki Y, Kasahara M, Yamaguchi K, Shigenobu S, Otani M, Nakano M, Nameta M, Shibata S, Ueno S, Moriguchi Y. A single-nucleotide substitution of CjTKPR1 determines pollen production in the gymnosperm plant Cryptomeria japonica. PNAS NEXUS 2023; 2:pgad236. [PMID: 37559748 PMCID: PMC10408704 DOI: 10.1093/pnasnexus/pgad236] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/06/2022] [Revised: 05/05/2023] [Accepted: 07/07/2023] [Indexed: 08/11/2023]
Abstract
Pollinosis, also known as pollen allergy or hay fever, is a global problem caused by pollen produced by various plant species. The wind-pollinated Japanese cedar (Cryptomeria japonica) is the largest contributor to severe pollinosis in Japan, where increasing proportions of people have been affected in recent decades. The MALE STERILITY 4 (MS4) locus of Japanese cedar controls pollen production, and its homozygous mutants (ms4/ms4) show abnormal pollen development after the tetrad stage and produce no mature pollen. In this study, we narrowed down the MS4 locus by fine mapping in Japanese cedar and found TETRAKETIDE α-PYRONE REDUCTASE 1 (TKPR1) gene in this region. Transformation experiments using Arabidopsis thaliana showed that single-nucleotide substitution ("T" to "C" at 244-nt position) of CjTKPR1 determines pollen production. Broad conservation of TKPR1 beyond plant division could lead to the creation of pollen-free plants not only for Japanese cedar but also for broader plant species.
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Affiliation(s)
- Hiroyuki Kakui
- Graduate School of Science and Technology, Niigata University, Niigata 950-2181, Japan
- Institute for Sustainable Agro-ecosystem Services, Graduate School of Agricultural and Life Science, University of Tokyo, Tokyo 188-0002, Japan
| | - Tokuko Ujino-Ihara
- Department of Forest Molecular Genetics and Biotechnology, Forestry and Forest Products Research Institute, Forest Research and Management Organization, Ibaraki 305-8687, Japan
| | - Yoichi Hasegawa
- Department of Forest Molecular Genetics and Biotechnology, Forestry and Forest Products Research Institute, Forest Research and Management Organization, Ibaraki 305-8687, Japan
| | - Eriko Tsurisaki
- Graduate School of Science and Technology, Niigata University, Niigata 950-2181, Japan
| | - Norihiro Futamura
- Department of Forest Molecular Genetics and Biotechnology, Forestry and Forest Products Research Institute, Forest Research and Management Organization, Ibaraki 305-8687, Japan
| | - Junji Iwai
- Forest and Forestry Technology Division, Niigata Prefectural Forest Research Institute, Niigata 958-0264, Japan
| | - Yuumi Higuchi
- Forest and Forestry Technology Division, Niigata Prefectural Forest Research Institute, Niigata 958-0264, Japan
| | - Takeshi Fujino
- Graduate School of Frontier Sciences, The University of Tokyo, Chiba 277-8561, Japan
| | - Yutaka Suzuki
- Graduate School of Frontier Sciences, The University of Tokyo, Chiba 277-8561, Japan
| | - Masahiro Kasahara
- Graduate School of Frontier Sciences, The University of Tokyo, Chiba 277-8561, Japan
| | - Katsushi Yamaguchi
- Trans-Scale Biology Center, National Institute for Basic Biology, Aichi 444-8585, Japan
| | - Shuji Shigenobu
- Trans-Scale Biology Center, National Institute for Basic Biology, Aichi 444-8585, Japan
| | - Masahiro Otani
- Faculty of Agriculture, Niigata University, Niigata 950-2181, Japan
| | - Masaru Nakano
- Faculty of Agriculture, Niigata University, Niigata 950-2181, Japan
| | - Masaaki Nameta
- Graduate School of Medical and Dental Sciences, Niigata University, Niigata 951-8122, Japan
| | - Shinsuke Shibata
- Graduate School of Medical and Dental Sciences, Niigata University, Niigata 951-8122, Japan
| | - Saneyoshi Ueno
- Department of Forest Molecular Genetics and Biotechnology, Forestry and Forest Products Research Institute, Forest Research and Management Organization, Ibaraki 305-8687, Japan
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