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Furlan JM, Centenaro GS, Bittencourt Fagundes M, Borges Filho C, Batista I, Bandarra N. Thraustochytrium sp. and Aurantiochytrium sp.: Sustainable Alternatives for Squalene Production. Mar Drugs 2025; 23:132. [PMID: 40137318 PMCID: PMC11944157 DOI: 10.3390/md23030132] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2025] [Revised: 03/06/2025] [Accepted: 03/10/2025] [Indexed: 03/27/2025] Open
Abstract
This study investigated a sustainable alternative to squalene production utilizing Thraustochytrium sp. and Aurantiochytrium sp., thereby reducing dependence on critically endangered sharks exploited for this compound. By optimizing fed-batch cultivation, a technique prevalent in industrial biotechnology, we have enhanced squalene yields and have demonstrated, through sensitivity analysis, the significance of this shift in preserving species at risk of extinction. Optimization of culture conditions led to the highest biomass concentrations for Thraustochytrium sp. being achieved at lower C-N ratios (<5.0), while the optimal biomass production for Aurantiochytrium sp. occurred in culture media with a high C-N ratio of 54:50. Regarding squalene production, Thraustochytrium sp. produced 26.13 mg/L in the fed-batch system after 72 h, and Aurantiochytrium sp. produced 54.97 mg/L in a batch system with 30 g/L glucose and 0.22 g/L nitrogen after 96 h, showcasing their potential for industrial applications. Moreover, the sensitivity analysis revealed that, on an industrial scale, both strains could produce up to 59.50 t of squalene annually in large-scale facilities, presenting a valuable and sustainable alternative for the biotechnological industry and significantly reducing the reliance on non-renewable and endangered sources such as shark liver oil and preventing the annual capture of over 156,661 sharks.
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Affiliation(s)
- Júnior Mendes Furlan
- Chromatography and Food Analysis Research Group, Federal University of Pampa, Itaqui 97650-000, RS, Brazil; (G.S.C.); (C.B.F.)
| | - Graciela Salete Centenaro
- Chromatography and Food Analysis Research Group, Federal University of Pampa, Itaqui 97650-000, RS, Brazil; (G.S.C.); (C.B.F.)
| | | | - Carlos Borges Filho
- Chromatography and Food Analysis Research Group, Federal University of Pampa, Itaqui 97650-000, RS, Brazil; (G.S.C.); (C.B.F.)
| | - Irineu Batista
- Portuguese Institute for Sea and Atmosphere, 1495-006 Lisbon, Portugal; (I.B.); (N.B.)
| | - Narcisa Bandarra
- Portuguese Institute for Sea and Atmosphere, 1495-006 Lisbon, Portugal; (I.B.); (N.B.)
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2
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Kleiner FH, Oh JJ, Aubin-Tam ME. Solving Challenges in Microalgae-Based Living Materials. ACS Synth Biol 2025; 14:307-315. [PMID: 39980378 PMCID: PMC11852197 DOI: 10.1021/acssynbio.4c00683] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2024] [Indexed: 02/22/2025]
Abstract
Engineered living materials (ELMs) integrate aspects of material science and biology into a unique platform, leading to materials and devices with features of life. Among those, ELMs containing microalgae have received increased attention due to the many benefits photosynthetic organisms provide. Due to their relatively recent occurrence, photosynthetic ELMs still face many challenges related to reliability, lifetime, scalability, and more, often based on the complicated crosstalk of cellular, material-based, and environmental variables in time. This Viewpoint aims to summarize potential avenues for improving ELMs, beginning with an emphasis on understanding the cell's perspective and the potential stresses imposed on them due to recurring flaws in many current ELMs. Potential solutions and their ease of implementation will be discussed, ranging from choice of organism, adjustments to the ELM design, to various genetic modification tools, so as to achieve ELMs with longer lifetime and improved functionality.
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Affiliation(s)
- Friedrich Hans Kleiner
- Department of Bionanoscience, Kavli
Institute of Nanoscience, Delft University
of Technology, Van der Maasweg 9, Delft 2629 HZ, The Netherlands
| | - Jeong-Joo Oh
- Department of Bionanoscience, Kavli
Institute of Nanoscience, Delft University
of Technology, Van der Maasweg 9, Delft 2629 HZ, The Netherlands
| | - Marie-Eve Aubin-Tam
- Department of Bionanoscience, Kavli
Institute of Nanoscience, Delft University
of Technology, Van der Maasweg 9, Delft 2629 HZ, The Netherlands
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3
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Ahmad S, Singh A, Akram W, Upadhyay A, Abrol GS. Algal lipids: A review on current status and future prospects in food processing. J Food Sci 2025; 90:e17618. [PMID: 39786345 DOI: 10.1111/1750-3841.17618] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2024] [Revised: 11/30/2024] [Accepted: 12/06/2024] [Indexed: 01/12/2025]
Abstract
The consumer demand for functional foods derived from natural sources has been enhanced due to health-promoting effects. Algae are widely available globally as a sustainable source of proteins, lipids, and carbohydrates. Algal lipids are underexplored natural sources that exhibit several nutraceutical effects and applications in fortification, cosmetics, and pharmaceuticals. Both macro- and microalgae are composed of high-quality lipids. These latter involve polar lipids, nonpolar lipids, and essential fatty acids. Therefore, this review aimed to bring out knowledge on the chemistry of various lipids isolated and identified from micro- and macroalgae. Further, their extraction using traditional thermal (solid-liquid, and liquid-liquid) and advanced nonthermal (supercritical fluid, microwave-, ultrasound-, and enzyme-assisted) techniques has been explored. Along with this, bioactivities of algal lipids have been discussed. This study explored algal lipids in advancing sustainable food processing technologies that contribute positively to environmental sustainability and global health, in line with United Nations Sustainable Development GroupUnited Nations Sustainable Development Group UNSDGs.
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Affiliation(s)
- Sameer Ahmad
- Department of Bioengineering, Integral University, Lucknow, Uttar Pradesh, India
| | - Amit Singh
- Department of Postharvest Technology, Banda University of Agriculture & Technology, Banda, Uttar Pradesh, India
| | - Wasim Akram
- Department of Pharmacology, School of Pharmaceutical Education and Research, Jamia Hamdard, New Delhi, India
| | - Ashutosh Upadhyay
- Department of Food Science and Technology, National Institute of Food Technology Entrepreneurship and Management Kundli, Sonipat, Haryana, India
| | - Ghan Shyam Abrol
- Department of Post-Harvest Technology, Rani Lakshmi Bai Central Agricultural University, Jhansi, Uttar Pradesh, India
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Sawant KR, Sarnaik AP, Singh R, Savvashe P, Baier T, Kruse O, Jutur PP, Lali A, Pandit RA. Outdoor cultivation and metabolomics exploration of Chlamydomonas engineered for bisabolene production. BIORESOURCE TECHNOLOGY 2024; 398:130513. [PMID: 38432540 DOI: 10.1016/j.biortech.2024.130513] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2023] [Revised: 02/27/2024] [Accepted: 02/29/2024] [Indexed: 03/05/2024]
Abstract
Demonstrating outdoor cultivation of engineered microalgae at considerable scales is essential for their prospective large-scale deployment. Hence, this study focuses on the outdoor cultivation of an engineered Chlamydomonas reinhardtii strain, 3XAgBs-SQs, for bisabolene production under natural dynamic conditions of light and temperature. Our preliminary outdoor experiments showed improved growth, but frequent culture collapses in conventional Tris-acetate-phosphate medium. In contrast, modified high-salt medium (HSM) supported prolonged cell survival, outdoor. However, their subsequent outdoor scale-up from 250 mL to 5 L in HSM was effective with 10 g/L bicarbonate supplementation. Pulse amplitude modulation fluorometry and metabolomic analysis further validated their improved photosynthesis and uncompromised metabolic fluxes towards the biomass and the products (natural carotenoids and engineered bisabolene). These strains could produce 906 mg/L bisabolene and 54 mg/L carotenoids, demonstrating the first successful outdoor photoautotrophic cultivation of engineeredC. reinhardtii,establishing it as a one-cell two-wells biorefinery.
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Affiliation(s)
- Kaustubh R Sawant
- DBT-ICT Centre for Energy Biosciences, Institute of Chemical Technology, Matunga, Mumbai 400019, India.
| | - Aditya P Sarnaik
- School for Sustainable Engineering and the Built Environment, Arizona State University, The Polytechnic Campus, Mesa, AZ 85212, USA.
| | - Rabinder Singh
- Omics of Algae Group, International Centre for Genetic Engineering and Biotechnology, Aruna Asaf Ali Marg, New Delhi 110067, India; Laboratory of Cell Cycles of Algae, Centre Algatech, Institute of Microbiology of the Czech Academy of Sciences, 237, Trebon 379 01, Czech Republic.
| | - Prashant Savvashe
- DBT-ICT Centre for Energy Biosciences, Institute of Chemical Technology, Matunga, Mumbai 400019, India.
| | - Thomas Baier
- Bielefeld University, Faculty of Biology, Center for Biotechnology (CeBiTec), Universitätsstrasse 27, 33615 Bielefeld, Germany.
| | - Olaf Kruse
- Bielefeld University, Faculty of Biology, Center for Biotechnology (CeBiTec), Universitätsstrasse 27, 33615 Bielefeld, Germany.
| | - Pannaga Pavan Jutur
- Omics of Algae Group, International Centre for Genetic Engineering and Biotechnology, Aruna Asaf Ali Marg, New Delhi 110067, India.
| | - Arvind Lali
- Department of Chemical Engineering, Institute of Chemical Technology, Matunga, Mumbai 400019, India.
| | - Reena A Pandit
- DBT-ICT Centre for Energy Biosciences, Institute of Chemical Technology, Matunga, Mumbai 400019, India.
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Trovão M, Schüler LM, Machado A, Bombo G, Navalho S, Barros A, Pereira H, Silva J, Freitas F, Varela J. Random Mutagenesis as a Promising Tool for Microalgal Strain Improvement towards Industrial Production. Mar Drugs 2022; 20:440. [PMID: 35877733 PMCID: PMC9318807 DOI: 10.3390/md20070440] [Citation(s) in RCA: 44] [Impact Index Per Article: 14.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2022] [Revised: 06/27/2022] [Accepted: 06/27/2022] [Indexed: 02/06/2023] Open
Abstract
Microalgae have become a promising novel and sustainable feedstock for meeting the rising demand for food and feed. However, microalgae-based products are currently hindered by high production costs. One major reason for this is that commonly cultivated wildtype strains do not possess the robustness and productivity required for successful industrial production. Several strain improvement technologies have been developed towards creating more stress tolerant and productive strains. While classical methods of forward genetics have been extensively used to determine gene function of randomly generated mutants, reverse genetics has been explored to generate specific mutations and target phenotypes. Site-directed mutagenesis can be accomplished by employing different gene editing tools, which enable the generation of tailor-made genotypes. Nevertheless, strategies promoting the selection of randomly generated mutants avoid the introduction of foreign genetic material. In this paper, we review different microalgal strain improvement approaches and their applications, with a primary focus on random mutagenesis. Current challenges hampering strain improvement, selection, and commercialization will be discussed. The combination of these approaches with high-throughput technologies, such as fluorescence-activated cell sorting, as tools to select the most promising mutants, will also be discussed.
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Affiliation(s)
- Mafalda Trovão
- Allmicroalgae Natural Products S.A., R&D Department, Rua 25 de Abril s/n, 2445-413 Pataias, Portugal; (M.T.); (A.M.); (A.B.); (J.S.)
- GreenCoLab—Associação Oceano Verde, University of Algarve, Campus de Gambelas, 8005-139 Faro, Portugal; (L.M.S.); (G.B.); (S.N.); (H.P.)
- Associate Laboratory i4HB—Institute for Health and Bioeconomy, School of Science and Technology, NOVA University Lisbon, 2829-516 Caparica, Portugal;
- UCIBIO—Applied Molecular Biosciences Unit, Department of Chemistry, School of Science and Technology, NOVA University Lisbon, 2829-516 Caparica, Portugal
| | - Lisa M. Schüler
- GreenCoLab—Associação Oceano Verde, University of Algarve, Campus de Gambelas, 8005-139 Faro, Portugal; (L.M.S.); (G.B.); (S.N.); (H.P.)
| | - Adriana Machado
- Allmicroalgae Natural Products S.A., R&D Department, Rua 25 de Abril s/n, 2445-413 Pataias, Portugal; (M.T.); (A.M.); (A.B.); (J.S.)
| | - Gabriel Bombo
- GreenCoLab—Associação Oceano Verde, University of Algarve, Campus de Gambelas, 8005-139 Faro, Portugal; (L.M.S.); (G.B.); (S.N.); (H.P.)
| | - Sofia Navalho
- GreenCoLab—Associação Oceano Verde, University of Algarve, Campus de Gambelas, 8005-139 Faro, Portugal; (L.M.S.); (G.B.); (S.N.); (H.P.)
| | - Ana Barros
- Allmicroalgae Natural Products S.A., R&D Department, Rua 25 de Abril s/n, 2445-413 Pataias, Portugal; (M.T.); (A.M.); (A.B.); (J.S.)
| | - Hugo Pereira
- GreenCoLab—Associação Oceano Verde, University of Algarve, Campus de Gambelas, 8005-139 Faro, Portugal; (L.M.S.); (G.B.); (S.N.); (H.P.)
| | - Joana Silva
- Allmicroalgae Natural Products S.A., R&D Department, Rua 25 de Abril s/n, 2445-413 Pataias, Portugal; (M.T.); (A.M.); (A.B.); (J.S.)
| | - Filomena Freitas
- Associate Laboratory i4HB—Institute for Health and Bioeconomy, School of Science and Technology, NOVA University Lisbon, 2829-516 Caparica, Portugal;
- UCIBIO—Applied Molecular Biosciences Unit, Department of Chemistry, School of Science and Technology, NOVA University Lisbon, 2829-516 Caparica, Portugal
| | - João Varela
- GreenCoLab—Associação Oceano Verde, University of Algarve, Campus de Gambelas, 8005-139 Faro, Portugal; (L.M.S.); (G.B.); (S.N.); (H.P.)
- CCMAR—Centre of Marine Sciences, University of Algarve, Campus de Gambelas, 8005-139 Faro, Portugal
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6
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Vyas S, Bettiga M, Rova U, Christakopoulos P, Matsakas L, Patel A. Structural and Molecular Characterization of Squalene Synthase Belonging to the Marine Thraustochytrid Species Aurantiochytrium limacinum Using Bioinformatics Approach. Mar Drugs 2022; 20:md20030180. [PMID: 35323479 PMCID: PMC8955342 DOI: 10.3390/md20030180] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2022] [Revised: 02/09/2022] [Accepted: 02/25/2022] [Indexed: 11/23/2022] Open
Abstract
The marine microorganisms thraustochytrids have been explored for their potential in the production of various bioactive compounds, such as DHA, carotenoids, and squalene. Squalene is a secondary metabolite of the triterpenoid class and is known for its importance in various industrial applications. The bioinformatic analysis for squalene synthase (SQS) gene (the first key enzyme in the tri-terpenoid synthesis pathway), that is prevailing among thraustochytrids, is poorly investigated. In-silico studies combining sequence alignments and bioinformatic tools helped in the preliminary characterization of squalene synthases found in Aurantiochytrium limacinum. The sequence contained highly conserved regions for SQS found among different species indicated the enzyme had all the regions for its functionality. The signal peptide sequence and transmembrane regions were absent, indicating an important aspect of the subcellular localization. Secondary and 3-D models generated using appropriate templates demonstrated the similarities with SQS of the other species. The 3-D model also provided important insights into possible active, binding, phosphorylation, and glycosylation sites.
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Affiliation(s)
- Sachin Vyas
- Biochemical Process Engineering, Division of Chemical Engineering, Department of Civil, Environmental, and Natural Resource Engineering, Luleå University of Technology, 97187 Luleå, Sweden; (S.V.); (U.R.); (P.C.); (L.M.)
| | - Maurizio Bettiga
- Department of Biological Engineering, Chalmers University of Technology, 41296 Gothenberg, Sweden;
- Bioeconomy Division, EviKrets Biobased Processes Consultants, Lunnavågen 87, 42834 Landvetter, Sweden
| | - Ulrika Rova
- Biochemical Process Engineering, Division of Chemical Engineering, Department of Civil, Environmental, and Natural Resource Engineering, Luleå University of Technology, 97187 Luleå, Sweden; (S.V.); (U.R.); (P.C.); (L.M.)
| | - Paul Christakopoulos
- Biochemical Process Engineering, Division of Chemical Engineering, Department of Civil, Environmental, and Natural Resource Engineering, Luleå University of Technology, 97187 Luleå, Sweden; (S.V.); (U.R.); (P.C.); (L.M.)
| | - Leonidas Matsakas
- Biochemical Process Engineering, Division of Chemical Engineering, Department of Civil, Environmental, and Natural Resource Engineering, Luleå University of Technology, 97187 Luleå, Sweden; (S.V.); (U.R.); (P.C.); (L.M.)
| | - Alok Patel
- Biochemical Process Engineering, Division of Chemical Engineering, Department of Civil, Environmental, and Natural Resource Engineering, Luleå University of Technology, 97187 Luleå, Sweden; (S.V.); (U.R.); (P.C.); (L.M.)
- Correspondence: ; Tel.: +46-(0)-920-491-570
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