Morphological, Physiological and Photophysiological Responses of Critically Endangered Acer catalpifolium to Acid Stress

Pan-metagenome reveals the abiotic stress resistome of cigar tobacco phyllosphere microbiome

The important role of microbial associations in mediating plant protection and responses to abiotic stresses has been widely recognized. However, there have been limited studies on the functional profile of the phyllosphere microbiota from tobacco (Nicotiana tabacum), hindering our understanding of the mechanisms underlying stress resilience in this representative and easy-to-cultivate model species from the solanaceous family. To address this knowledge gap, our study employed shotgun metagenomic sequencing for the first time to analyze the genetic catalog and identify putative plant growth promoting bacteria (PGPB) candidates that confer abiotic stress resilience throughout the growth period of cigar tobacco in the phyllosphere. We identified abundant genes from specific bacterial lineages, particularly Pseudomonas, within the cigar tobacco phyllospheric microbiome. These genes were found to confer resilience against a wide range of stressors, including osmotic and drought stress, heavy metal toxicity, temperature perturbation, organic pollutants, oxidative stress, and UV light damage. In addition, we conducted a virome mining analysis on the metagenome to explore the potential roles of viruses in driving microbial adaptation to environmental stresses. Our results identified a total of 3,320 scaffolds predicted to be viral from the cigar tobacco phyllosphere metagenome, with various phages infecting Pseudomonas, Burkholderia, Enterobacteria, Ralstonia, and related viruses. Within the virome, we also annotated genes associated with abiotic stress resilience, such as alkaline phosphatase D (phoD) for nutrient solubilization and glutamate-5-semialdehyde dehydrogenase (proA) for osmolyte synthesis. These findings shed light on the unexplored roles of viruses in facilitating and transferring abiotic stress resilience in the phyllospheric microbiome through beneficial interactions with their hosts. The findings from this study have important implications for agricultural practices, as they offer potential strategies for harnessing the capabilities of the phyllosphere microbiome to enhance stress tolerance in crop plants.

Environmental drivers of the leaf nitrogen and phosphorus stoichiometry characteristics of critically endangered Acer catalpifolium

Acer catalpifolium is a perennial deciduous broad-leaved woody plant, listed in the second-class protection program in China mainly distributed on the northwest edge of Chengdu plain. However, extensive anthropogenic disturbances and pollutants emissions (such as SO₂, NH₃ and NO_X) in this area have created a heterogeneous habitat for this species and its impacts have not been systematically studied. In this study, we investigated the leaf nitrogen (N) and phosphorus (P) content of A. catalpifolium in the natural distribution areas, and a series of simulation experiments (e.g., various water and light supply regimes, different acid and N deposition levels, reintroduction management) were conducted to analyze responses of N and P stoichiometric characteristics to environmental changes. The results showed that leaf nitrogen content (LNC) was 14.49 ~ 25.44 mg g^-1, leaf phosphorus content (LPC) was 1.29~3.81 mg g^-1 and the N/P ratio of the leaf (L-N/P) was 4.87~13.93. As per the simulation experiments, LNC of A. catalpifolium is found to be relatively high at strong light conditions (80% of full light), high N deposition (100 and 150 kg N ha^-1), low acidity rainwater, reintroduction to understory area or N fertilizer applications. A high level of LPC was found when applied with 80% of full light and moderate N deposition (100 kg N ha^-1). L-N/P was high under severe shade (8% of full light), severe N deposition (200 kg N ha^-1), and reintroduction to gap and undergrowth habitat; however, low L-N/P was observed at low acidity rainwater or P fertilizer application. The nutrient supply facilitates corresponding elements uptake, shade tends to induce P limitation and soil acidification shows N limitation. Our results provide theoretical guidance for field management and nutrient supply regimes for future protection, population rejuvenation of this species and provide guidelines for conservation and nutrient management strategies for the endangered species.