Phylogenomic Analysis Reconstructed the Order Matoniales from Paleopolyploidy Veil

Fertile Goeppertella from the Jurassic of Patagonia: mosaic evolution in the Dipteridaceae-Matoniaceae lineage

Goeppertella has been postulated as a monophyletic group, whose precise position within the Gleichenoid families Dipteriaceae and Matoniaceae, remains poorly understood. Previously described Goeppertella specimens are based on frond fragments and its fertile morphology is represented by a few, poorly preserved specimens. We describe a new species based on the largest collection of fertile specimens known to date and discuss the evolutionary history of the genus based on the additional reproductive characters provided by the fossils described. Plant impressions were collected in Early Jurassic sediments of Patagonia, Argentina. The specimens were described, and silicone rubber casts were developed to examine in detail vegetative and reproductive features. The new species was compared with other Goeppertella species. Finally, a backbone analysis was performed in the context of a previously published combined matrix of Dipteridaceae, using the maximum parsimony criterion. The new species is described based on a combination of features that have not been previously reported. The vegetative morphology shows affinities with most fossil and extant Dipteriaceae, contrasting with the reproductive morphology which is more comparable with the scarce number of fossil dipteridaceous forms and it is more spread in the sister family, Matoniaceae. The backbone analysis indicates that the position of the new species vary among different positions among Dipteridaceae and Matoniaceae. Additional analyses, discriminating the signal of reproductive and vegetative character, are provided to discuss the base of this uncertainty. We consider Goeppertella as a member of the family Dipteridaceae since we interpret most shared features with Matoniaceae as plesiomorphic conditions for the family. In contrast, most shared features with Dipteridaceae represent apomorphies for the group. Thus, Goeppertella would represent an early diverging genus in Dipteridaceae, considering the venation characters as the most important in order to define the family.

An open and continuously updated fern tree of life

Ferns, with about 12,000 species, are the second most diverse lineage of vascular plants after angiosperms. They have been the subject of numerous molecular phylogenetic studies, resulting in the publication of trees for every major clade and DNA sequences from nearly half of all species. Global fern phylogenies have been published periodically, but as molecular systematics research continues at a rapid pace, these become quickly outdated. Here, we develop a mostly automated, reproducible, open pipeline to generate a continuously updated fern tree of life (FTOL) from DNA sequence data available in GenBank. Our tailored sampling strategy combines whole plastomes (few taxa, many loci) with commonly sequenced plastid regions (many taxa, few loci) to obtain a global, species-level fern phylogeny with high resolution along the backbone and maximal sampling across the tips. We use a curated reference taxonomy to resolve synonyms in general compliance with the community-driven Pteridophyte Phylogeny Group I classification. The current FTOL includes 5,582 species, an increase of ca. 40% relative to the most recently published global fern phylogeny. Using an updated and expanded list of 51 fern fossil constraints, we find estimated ages for most families and deeper clades to be considerably older than earlier studies. FTOL and its accompanying datasets, including the fossil list and taxonomic database, will be updated on a regular basis and are available via a web portal (https://fernphy.github.io) and R packages, enabling immediate access to the most up-to-date, comprehensively sampled fern phylogeny. FTOL will be useful for anyone studying this important group of plants over a wide range of taxonomic scales, from smaller clades to the entire tree. We anticipate FTOL will be particularly relevant for macroecological studies at regional to global scales and will inform future taxonomic systems with the most recent hypothesis of fern phylogeny.