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Yang L, Li S, Ahmed W, Jiang T, Mei F, Hu X, Liu W, Abbas FM, Xue R, Peng X, Zhao Z. Exploring the Relationship Between Biochar Pore Structure and Microbial Community Composition in Promoting Tobacco Growth. PLANTS (BASEL, SWITZERLAND) 2024; 13:2952. [PMID: 39519871 PMCID: PMC11548322 DOI: 10.3390/plants13212952] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/12/2024] [Revised: 10/16/2024] [Accepted: 10/16/2024] [Indexed: 11/16/2024]
Abstract
The potential benefits of biochar, a carbon-rich substance derived from biomass, for enhancing agricultural yield and soil health have drawn increasing interest. Nevertheless, owing to the lack of specialized studies, the role of its poly-spatial structure in the success of fostering plant growth remains unclear. This study aimed to assess the effects of various biochar pore shapes on tobacco growth and the underlying microbiological processes. Three pyrolysis temperatures (250 °C, 400 °C, and 550 °C) were used to produce biochar from tobacco stems, resulting in different pore structures (T3 > T2 > T1). We then used BET-specific surface area (BET), t.Plot micropore specific surface area (t.Plot), mesopore specific surface area (MSSA), specific pore volume (SPV), average pore size (AP), and mesopore pore volume (MPV) measurements to evaluate the effects of these biochars on tobacco growth and biomass accumulation, and microbial analyses were performed to investigate the underlying mechanisms. When applied to plants, biochar increased their growth compared to untreated controls. The most notable improvement in tobacco growth was observed in the biochar produced at 400 °C (T3), which possessed the largest and most advantageous pore structure among all treatments. Further studies demonstrated that biochars with greater specific surface areas (BET, t.Plot, and MSSA) positively altered the abundance of key microbial taxa (e.g., Stenotrophobacter, Ensifer, Claroideoglomus) and community composition, thereby encouraging plant development and biomass accumulation. Conversely, greater pore volumes (SPV, AP, and MPV) inhibited microbial activity and significantly affected growth and biomass accumulation. Structural equation modeling further demonstrated that the pore structure of biochar greatly affected plant growth by changing the relative abundance and community composition of soil microbes. Maximizing the benefits of biochar in stimulating plant growth and improving soil microbial communities depends on optimizing the material's pore structure, particularly by increasing the specific surface area. These findings will help expand the use of biochar in sustainable agriculture.
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Affiliation(s)
- Linyuan Yang
- Yunnan Agricultural University, Kunming 650201, China
- Yunnan Academy of Agricultural Sciences, Institute of Tropical and Subtropical Cash Crops, Baoshan 678000, China
| | - Shichen Li
- Yunnan Agricultural University, Kunming 650201, China
| | - Waqar Ahmed
- Yunnan Agricultural University, Kunming 650201, China
| | - Tao Jiang
- Yunnan Agricultural University, Kunming 650201, China
| | - Fupeng Mei
- Yunnan Agricultural University, Kunming 650201, China
| | - Xiaodong Hu
- Yunnan Agricultural University, Kunming 650201, China
| | - Wubo Liu
- Yunnan Agricultural University, Kunming 650201, China
| | - Fatima M. Abbas
- Department of Biology, Faculty of Sciences and Arts, King Khalid University, Dahran Al-Janoub 61421, Saudi Arabia
| | - Rujun Xue
- Yunnan Agricultural University, Kunming 650201, China
| | - Xiaoci Peng
- Yunnan Agricultural University, Kunming 650201, China
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Kaur J, Tiwari N, Asif MH, Dharmesh V, Naseem M, Srivastava PK, Srivastava S. Integrated genome-transcriptome analysis unveiled the mechanism of Debaryomyces hansenii-mediated arsenic stress amelioration in rice. JOURNAL OF HAZARDOUS MATERIALS 2024; 469:133954. [PMID: 38484657 DOI: 10.1016/j.jhazmat.2024.133954] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2023] [Revised: 02/22/2024] [Accepted: 03/02/2024] [Indexed: 04/07/2024]
Abstract
Globally, rice is becoming more vulnerable to arsenic (As) pollution, posing a serious threat to public food safety. Previously Debaryomyces hansenii was found to reduce grain As content of rice. To better understand the underlying mechanism, we performed a genome analysis to identify the key genes in D. hansenii responsible for As tolerance and plant growth promotion. Notably, genes related to As resistance (ARR, Ycf1, and Yap) were observed in the genome of D. hansenii. The presence of auxin pathway and glutathione metabolism-related genes may explain the plant growth-promoting potential and As tolerance mechanism of this novel yeast strain. The genome annotation of D. hansenii indicated that it contains a repertoire of genes encoding antioxidants, well corroborated with the in vitro studies of GST, GR, and glutathione content. In addition, the effect of D. hansenii on gene expression profiling of rice plants under As stress was also examined. The Kyoto Encyclopedia of Genes and Genomes (KEGG) database revealed 307 genes, annotated in D. hansenii-treated rice, related to metabolic pathways (184), photosynthesis (12), glutathione (10), tryptophan (4), and biosynthesis of secondary metabolite (117). Higher expression of regulatory elements like AUX/IAA and WRKY transcription factors (TFs), and defense-responsive genes dismutases, catalases, peroxiredoxin, and glutaredoxins during D. hansenii+As exposure was also observed. Combined analysis revealed that D. hansenii genes are contributing to stress mitigation in rice by supporting plant growth and As-tolerance. The study lays the foundation to develop yeast as a beneficial biofertilizer for As-prone areas.
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Affiliation(s)
- Jasvinder Kaur
- CSIR-National Botanical Research Institute, Rana Pratap Marg, Lucknow 226001, India
| | - Nikita Tiwari
- CSIR-National Botanical Research Institute, Rana Pratap Marg, Lucknow 226001, India
| | - Mehar Hasan Asif
- CSIR-National Botanical Research Institute, Rana Pratap Marg, Lucknow 226001, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Varsha Dharmesh
- CSIR-National Botanical Research Institute, Rana Pratap Marg, Lucknow 226001, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Mariya Naseem
- CSIR-National Botanical Research Institute, Rana Pratap Marg, Lucknow 226001, India
| | - Pankaj Kumar Srivastava
- CSIR-National Botanical Research Institute, Rana Pratap Marg, Lucknow 226001, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Suchi Srivastava
- CSIR-National Botanical Research Institute, Rana Pratap Marg, Lucknow 226001, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India.
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Giehl A, dos Santos AA, Cadamuro RD, Tadioto V, Guterres IZ, Prá Zuchi ID, Minussi GDA, Fongaro G, Silva IT, Alves SL. Biochemical and Biotechnological Insights into Fungus-Plant Interactions for Enhanced Sustainable Agricultural and Industrial Processes. PLANTS (BASEL, SWITZERLAND) 2023; 12:2688. [PMID: 37514302 PMCID: PMC10385130 DOI: 10.3390/plants12142688] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2023] [Revised: 07/07/2023] [Accepted: 07/17/2023] [Indexed: 07/30/2023]
Abstract
The literature is full of studies reporting environmental and health issues related to using traditional pesticides in food production and storage. Fortunately, alternatives have arisen in the last few decades, showing that organic agriculture is possible and economically feasible. And in this scenario, fungi may be helpful. In the natural environment, when associated with plants, these microorganisms offer plant-growth-promoting molecules, facilitate plant nutrient uptake, and antagonize phytopathogens. It is true that fungi can also be phytopathogenic, but even they can benefit agriculture in some way-since pathogenicity is species-specific, these fungi are shown to be useful against weeds (as bioherbicides). Finally, plant-associated yeasts and molds are natural biofactories, and the metabolites they produce while dwelling in leaves, flowers, roots, or the rhizosphere have the potential to be employed in different industrial activities. By addressing all these subjects, this manuscript comprehensively reviews the biotechnological uses of plant-associated fungi and, in addition, aims to sensitize academics, researchers, and investors to new alternatives for healthier and more environmentally friendly production processes.
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Affiliation(s)
- Anderson Giehl
- Laboratory of Yeast Biochemistry, Federal University of Fronteira Sul, Chapecó 89815-899, SC, Brazil
- Graduate Program in Biotechnology and Biosciences, Federal University of Santa Catarina, Florianópolis 88040-900, SC, Brazil
| | - Angela Alves dos Santos
- Laboratory of Yeast Biochemistry, Federal University of Fronteira Sul, Chapecó 89815-899, SC, Brazil
| | - Rafael Dorighello Cadamuro
- Graduate Program in Biotechnology and Biosciences, Federal University of Santa Catarina, Florianópolis 88040-900, SC, Brazil
- Laboratory of Applied Virology, Department of Microbiology, Immunology and Parasitology, Federal University of Santa Catarina, Florianópolis 88040-900, SC, Brazil
| | - Viviani Tadioto
- Laboratory of Yeast Biochemistry, Federal University of Fronteira Sul, Chapecó 89815-899, SC, Brazil
- Graduate Program in Biotechnology and Biosciences, Federal University of Santa Catarina, Florianópolis 88040-900, SC, Brazil
- Laboratory of Applied Virology, Department of Microbiology, Immunology and Parasitology, Federal University of Santa Catarina, Florianópolis 88040-900, SC, Brazil
| | - Iara Zanella Guterres
- Laboratory of Applied Virology, Department of Microbiology, Immunology and Parasitology, Federal University of Santa Catarina, Florianópolis 88040-900, SC, Brazil
- Graduate Program in Pharmacy, Federal University of Santa Catarina, Florianópolis 88040-900, SC, Brazil
| | - Isabella Dai Prá Zuchi
- Laboratory of Applied Virology, Department of Microbiology, Immunology and Parasitology, Federal University of Santa Catarina, Florianópolis 88040-900, SC, Brazil
- Graduate Program in Pharmacy, Federal University of Santa Catarina, Florianópolis 88040-900, SC, Brazil
| | - Gabriel do Amaral Minussi
- Laboratory of Yeast Biochemistry, Federal University of Fronteira Sul, Chapecó 89815-899, SC, Brazil
- Graduate Program in Environment and Sustainable Technologies, Federal University of Fronteira Sul, Cerro Largo 97900-000, RS, Brazil
| | - Gislaine Fongaro
- Graduate Program in Biotechnology and Biosciences, Federal University of Santa Catarina, Florianópolis 88040-900, SC, Brazil
- Laboratory of Applied Virology, Department of Microbiology, Immunology and Parasitology, Federal University of Santa Catarina, Florianópolis 88040-900, SC, Brazil
| | - Izabella Thais Silva
- Graduate Program in Biotechnology and Biosciences, Federal University of Santa Catarina, Florianópolis 88040-900, SC, Brazil
- Laboratory of Applied Virology, Department of Microbiology, Immunology and Parasitology, Federal University of Santa Catarina, Florianópolis 88040-900, SC, Brazil
- Graduate Program in Pharmacy, Federal University of Santa Catarina, Florianópolis 88040-900, SC, Brazil
| | - Sergio Luiz Alves
- Laboratory of Yeast Biochemistry, Federal University of Fronteira Sul, Chapecó 89815-899, SC, Brazil
- Graduate Program in Biotechnology and Biosciences, Federal University of Santa Catarina, Florianópolis 88040-900, SC, Brazil
- Graduate Program in Environment and Sustainable Technologies, Federal University of Fronteira Sul, Cerro Largo 97900-000, RS, Brazil
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