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Alrajeh S, Naveed Khan M, Irhash Putra A, Al-Ugaili DN, Alobaidi KH, Al Dossary O, Al-Obaidi JR, Jamaludin AA, Allawi MY, Al-Taie BS, Abdul Rahman N, Rahmad N. Mapping proteomic response to salinity stress tolerance in oil crops: Towards enhanced plant resilience. J Genet Eng Biotechnol 2024; 22:100432. [PMID: 39674646 PMCID: PMC11555348 DOI: 10.1016/j.jgeb.2024.100432] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2024] [Revised: 09/24/2024] [Accepted: 10/17/2024] [Indexed: 12/16/2024]
Abstract
Exposure to saline environments significantly hampers the growth and productivity of oil crops, harmfully affecting their nutritional quality and suitability for biofuel production. This presents a critical challenge, as understanding salt tolerance mechanisms in crops is key to improving their performance in coastal and high-salinity regions. Our content might be read more properly: This review assembles current knowledge on protein-level changes related to salinity resistance in oil crops. From an extensive analysis of proteomic research, featured here are key genes and cellular pathways which react to salt stress. The literature evinces that cutting-edge proteomic approaches - such as 2D-DIGE, IF-MS/MS, and iTRAQ - have been required to reveal protein expression patterns in oil crops under salt conditions. These studies consistently uncover dramatic shifts in protein abundance associated with important physiological activities including antioxidant defence, stress-related signalling pathways, ion homeostasis, and osmotic regulation. Notably, proteins like ion channels (SOS1, NHX), osmolytes (proline, glycine betaine), antioxidant enzymes (SOD, CAT), and stress-related proteins (HSPs, LEA) play central roles in maintaining cellular balance and reducing oxidative stress. These findings underline the complex regulatory networks that govern oil crop salt tolerance. The application of this proteomic information can inform breeding and genetic engineering strategies to enhance salt resistance. Future research should aim to integrate multiple omics data to gain a comprehensive view of salinity responses and identify potential markers for crop improvement.
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Affiliation(s)
- Sarah Alrajeh
- Department of Biology, Faculty of Science and Mathematics, Universiti Pendidikan Sultan Idris, 35900 Tanjong Malim, Perak, Malaysia
| | - Muhammad Naveed Khan
- Department of Biology, Faculty of Science and Mathematics, Universiti Pendidikan Sultan Idris, 35900 Tanjong Malim, Perak, Malaysia
| | - Aidhya Irhash Putra
- Department of Biology, Faculty of Science and Mathematics, Universiti Pendidikan Sultan Idris, 35900 Tanjong Malim, Perak, Malaysia
| | - Dhafar N Al-Ugaili
- Department of Molecular and Medical Biotechnology, College of Biotechnology, AL-Nahrain University, Jadriya, Baghdad, Iraq
| | - Khalid H Alobaidi
- Department of Plant Biotechnology, College of Biotechnology, AL-Nahrain University, Baghdad, Iraq
| | - Othman Al Dossary
- Agricultural Biotechnology Department, College of Agriculture and Food Sciences, King Faisal University, Al-Ahsa 31982, Saudi Arabia
| | - Jameel R Al-Obaidi
- Department of Biology, Faculty of Science and Mathematics, Universiti Pendidikan Sultan Idris, 35900 Tanjong Malim, Perak, Malaysia; Applied Science Research Center. Applied Science Private University, Amman, Jordan.
| | - Azi Azeyanty Jamaludin
- Department of Biology, Faculty of Science and Mathematics, Universiti Pendidikan Sultan Idris, 35900 Tanjong Malim, Perak, Malaysia; Center of Biodiversity and Conservation, Faculty of Science and Mathematics, Universiti Pendidikan Sultan Idris, 35900 Tanjung Malim, Perak, Malaysia
| | - Mohammed Yahya Allawi
- Environmental Health Department, College of Environmental Sciences, University of Mosul, 41002 Mosul, Iraq
| | - Bilal Salim Al-Taie
- Environmental Health Department, College of Environmental Sciences, University of Mosul, 41002 Mosul, Iraq
| | - Norafizah Abdul Rahman
- Gene Marker Laboratory, Faculty of Agriculture and Life Sciences (AGLS), Science South Building, Lincoln University, Lincoln, 7608 Canterbury, New Zealand
| | - Norasfaliza Rahmad
- Agro-Biotechnology Institute, National Institutes of Biotechnology Malaysia, Jalan Bioteknologi, 43400 Serdang, Selangor, Malaysia
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Fatima S, Khan MO, Iqbal N, Iqbal MM, Qamar H, Imtiaz M, Hundleby P, Wei Z, Ahmad N. Studying Salt-Induced Shifts in Gene Expression Patterns of Glucosinolate Transporters and Glucosinolate Accumulation in Two Contrasting Brassica Species. Metabolites 2024; 14:179. [PMID: 38668307 PMCID: PMC11052333 DOI: 10.3390/metabo14040179] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2024] [Revised: 03/13/2024] [Accepted: 03/15/2024] [Indexed: 04/28/2024] Open
Abstract
Brassica crops are well known for the accumulation of glucosinolates-secondary metabolites crucial for plants' adaptation to various stresses. Glucosinolates also functioning as defence compounds pose challenges to food quality due to their goitrogenic properties. Their disruption leaves plants susceptible to insect pests and diseases. Hence, a targeted reduction in seed glucosinolate content is of paramount importance to increase food acceptance. GLUCOSINOLATE TRANSPORTERS (GTRs) present a promising avenue for selectively reducing glucosinolate concentrations in seeds while preserving biosynthesis elsewhere. In this study, 54 putative GTR protein sequences found in Brassica were retrieved, employing Arabidopsis GTR1 and GTR2 templates. Comprehensive bioinformatics analyses, encompassing gene structure organization, domain analysis, motif assessments, promoter analysis, and cis-regulatory elements, affirmed the existence of transporter domains and stress-related regulatory elements. Phylogenetic analysis revealed patterns of conservation and divergence across species. Glucosinolates have been shown to increase under stress conditions, indicating a potential role in stress response. To elucidate the role of GTRs in glucosinolate transportation under NaCl stress in two distinct Brassica species, B. juncea and B. napus, plants were subjected to 0, 100, or 200 mM NaCl. Based on the literature, key GTR genes were chosen and their expression across various plant parts was assessed. Both species displayed divergent trends in their biochemical profiles as well as glucosinolate contents under elevated salt stress conditions. Statistical modelling identified significant contributors to glucosinolate variations, guiding the development of targeted breeding strategies for low-glucosinolate varieties. Notably, GTR2A2 exhibited pronounced expressions in stems, contributing approximately 52% to glucosinolate content variance, while GTR2B1/C2 displayed significant expression in flowers. Additionally, GTR2A1 and GTR1A2/B1 demonstrated noteworthy expression in roots. This study enhances our understanding of glucosinolate regulation under stress conditions, offering avenues to improve Brassica crop quality and resilience.
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Affiliation(s)
- Samia Fatima
- National Institute for Biotechnology and Genetic Engineering College (NIBGE-C), Pakistan Institute for Engineering and Applied Sciences (PIEAS), Faisalabad 38000, Pakistan; (S.F.); (M.O.K.); (N.I.); (M.M.I.); (M.I.)
| | - Muhammad Omar Khan
- National Institute for Biotechnology and Genetic Engineering College (NIBGE-C), Pakistan Institute for Engineering and Applied Sciences (PIEAS), Faisalabad 38000, Pakistan; (S.F.); (M.O.K.); (N.I.); (M.M.I.); (M.I.)
| | - Nadia Iqbal
- National Institute for Biotechnology and Genetic Engineering College (NIBGE-C), Pakistan Institute for Engineering and Applied Sciences (PIEAS), Faisalabad 38000, Pakistan; (S.F.); (M.O.K.); (N.I.); (M.M.I.); (M.I.)
| | - Muhammad Mudassar Iqbal
- National Institute for Biotechnology and Genetic Engineering College (NIBGE-C), Pakistan Institute for Engineering and Applied Sciences (PIEAS), Faisalabad 38000, Pakistan; (S.F.); (M.O.K.); (N.I.); (M.M.I.); (M.I.)
| | - Huma Qamar
- Oilseeds Research Institute, Ayub Agricultural Research Institute, Faisalabad 38000, Pakistan;
- School of Biological Sciences, The University of Western Australia, Crawley, WA 6009, Australia
| | - Muhammad Imtiaz
- National Institute for Biotechnology and Genetic Engineering College (NIBGE-C), Pakistan Institute for Engineering and Applied Sciences (PIEAS), Faisalabad 38000, Pakistan; (S.F.); (M.O.K.); (N.I.); (M.M.I.); (M.I.)
| | - Penny Hundleby
- Department of Crop Genetics, John Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK;
| | - Zhengyi Wei
- Maize Research Institute, Guangxi Academy of Agricultural Sciences, Nanning 530007, China
| | - Niaz Ahmad
- National Institute for Biotechnology and Genetic Engineering College (NIBGE-C), Pakistan Institute for Engineering and Applied Sciences (PIEAS), Faisalabad 38000, Pakistan; (S.F.); (M.O.K.); (N.I.); (M.M.I.); (M.I.)
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Li G, Guo X, Sun Y, Gangurde SS, Zhang K, Weng F, Wang G, Zhang H, Li A, Wang X, Zhao C. Physiological and biochemical mechanisms underlying the role of anthocyanin in acquired tolerance to salt stress in peanut ( Arachis hypogaea L.). FRONTIERS IN PLANT SCIENCE 2024; 15:1368260. [PMID: 38529061 PMCID: PMC10961369 DOI: 10.3389/fpls.2024.1368260] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/10/2024] [Accepted: 02/26/2024] [Indexed: 03/27/2024]
Abstract
Anthocyanin is an important pigment that prevents oxidative stress and mediates adaptation of plants to salt stress. Peanuts with dark red and black testa are rich in anthocyanin. However, correlation between salt tolerance and anthocyanin content in black and dark red testa peanuts is unknown. In this study, three peanut cultivars namely YZ9102 (pink testa), JHR1 (red testa) and JHB1 (black testa) were subjected to sodium chloride (NaCl) stress. The plant growth, ion uptake, anthocyanin accumulation, oxidation resistance and photosynthetic traits were comparatively analyzed. We observed that the plant height, leaf area and biomass under salt stress was highly inhibited in pink color testa (YZ9102) as compare to black color testa (JHB1). JHB1, a black testa colored peanut was identified as the most salt-tolerance cultivar, followed by red (JHR1) and pink(YZ9102). During salt stress, JHB1 exhibited significantly higher levels of anthocyanin and flavonoid accumulation compared to JHR1 and YZ9102, along with increased relative activities of antioxidant protection and photosynthetic efficiency. However, the K+/Na+ and Ca2+/Na+ were consistently decreased among three cultivars under salt stress, suggesting that the salt tolerance of black testa peanut may not be related to ion absorption. Therefore, we predicted that salt tolerance of JHB1 may be attributed to the accumulation of the anthocyanin and flavonoids, which activated antioxidant protection against the oxidative damage to maintain the higher photosynthetic efficiency and plant growth. These findings will be useful for improving salt tolerance of peanuts.
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Affiliation(s)
- Guanghui Li
- Shandong International Joint Laboratory of Agricultural Germplasm Resources Innovation, Institute of Crop Germplasm Resources (Institute of Biotechnology), Shandong Academy of Agricultural Sciences, Jinan, China
| | - Xin Guo
- Shandong International Joint Laboratory of Agricultural Germplasm Resources Innovation, Institute of Crop Germplasm Resources (Institute of Biotechnology), Shandong Academy of Agricultural Sciences, Jinan, China
| | - Yanbin Sun
- Shandong International Joint Laboratory of Agricultural Germplasm Resources Innovation, Institute of Crop Germplasm Resources (Institute of Biotechnology), Shandong Academy of Agricultural Sciences, Jinan, China
| | - Sunil S. Gangurde
- Center of Excellence in Genomics & Systems Biology (CEGSB), International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India
| | - Kun Zhang
- College of Agronomy, Shandong Agricultural University, Taian, China
| | - Fubin Weng
- Shandong International Joint Laboratory of Agricultural Germplasm Resources Innovation, Institute of Crop Germplasm Resources (Institute of Biotechnology), Shandong Academy of Agricultural Sciences, Jinan, China
- College of Life Sciences, Shandong Normal University, Jinan, China
| | - Guanghao Wang
- Shandong International Joint Laboratory of Agricultural Germplasm Resources Innovation, Institute of Crop Germplasm Resources (Institute of Biotechnology), Shandong Academy of Agricultural Sciences, Jinan, China
| | - Huan Zhang
- Shandong International Joint Laboratory of Agricultural Germplasm Resources Innovation, Institute of Crop Germplasm Resources (Institute of Biotechnology), Shandong Academy of Agricultural Sciences, Jinan, China
- College of Life Sciences, Shandong Normal University, Jinan, China
| | - Aiqin Li
- Shandong International Joint Laboratory of Agricultural Germplasm Resources Innovation, Institute of Crop Germplasm Resources (Institute of Biotechnology), Shandong Academy of Agricultural Sciences, Jinan, China
| | - Xingjun Wang
- Shandong International Joint Laboratory of Agricultural Germplasm Resources Innovation, Institute of Crop Germplasm Resources (Institute of Biotechnology), Shandong Academy of Agricultural Sciences, Jinan, China
| | - Chuanzhi Zhao
- Shandong International Joint Laboratory of Agricultural Germplasm Resources Innovation, Institute of Crop Germplasm Resources (Institute of Biotechnology), Shandong Academy of Agricultural Sciences, Jinan, China
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Meinzer M, Ahmad N, Nielsen BL. Halophilic Plant-Associated Bacteria with Plant-Growth-Promoting Potential. Microorganisms 2023; 11:2910. [PMID: 38138054 PMCID: PMC10745547 DOI: 10.3390/microorganisms11122910] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2023] [Revised: 11/18/2023] [Accepted: 11/30/2023] [Indexed: 12/24/2023] Open
Abstract
The salinization of soils is a growing agricultural concern worldwide. Irrigation practices, drought, and climate change are leading to elevated salinity levels in many regions, resulting in reduced crop yields. However, there is potential for a solution in the microbiome of halophytes, which are naturally salt-tolerant plants. These plants harbor a salt-tolerant microbiome in their rhizosphere (around roots) and endosphere (within plant tissue). These bacteria may play a significant role in conferring salt tolerance to the host plants. This leads to the possibility of transferring these beneficial bacteria, known as salt-tolerant plant-growth-promoting bacteria (ST-PGPB), to salt-sensitive plants, enabling them to grow in salt-affected areas to improve crop productivity. In this review, the background of salt-tolerant microbiomes is discussed and their potential use as ST-PGPB inocula is explored. We focus on two Gram-negative bacterial genera, Halomonas and Kushneria, which are commonly found in highly saline environments. These genera have been found to be associated with some halophytes, suggesting their potential for facilitating ST-PGPB activity. The study of salt-tolerant microbiomes and their use as PGPB holds promise for addressing the challenges posed by soil salinity in the context of efforts to improve crop growth in salt-affected areas.
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Affiliation(s)
- McKay Meinzer
- Department of Microbiology & Molecular Biology, Brigham Young University, Provo, UT 84602, USA;
| | - Niaz Ahmad
- National Institute for Biotechnology and Genetic Engineering College (NIBGE-C), Pakistan Institute for Engineering and Applied Sciences (PIEAS), Faisalabad 38000, Pakistan;
| | - Brent L. Nielsen
- National Institute for Biotechnology and Genetic Engineering College (NIBGE-C), Pakistan Institute for Engineering and Applied Sciences (PIEAS), Faisalabad 38000, Pakistan;
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