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Su H, Ding X, Liao B, Zhang D, Huang J, Bai J, Xu S, Zhang J, Xu W, Qiu X, Gong L, Huang Z. Comparative chloroplast genomes provided insights into the evolution and species identification on the Datureae plants. FRONTIERS IN PLANT SCIENCE 2023; 14:1270052. [PMID: 37941675 PMCID: PMC10628451 DOI: 10.3389/fpls.2023.1270052] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/31/2023] [Accepted: 10/05/2023] [Indexed: 11/10/2023]
Abstract
Generally, chloroplast genomes of angiosperms are always highly conserved but carry a certain number of variation among species. In this study, chloroplast genomes of 13 species from Datureae tribe that are of importance both in ornamental gardening and medicinal usage were studied. In addition, seven chloroplast genomes from Datureae together with two from Solanaceae species retrieved from the National Center for Biotechnology Information (NCBI) were integrated into this study. The chloroplast genomes ranged in size from 154,686 to 155,979 and from 155,497 to 155,919 bp for species of Datura and Brugmansia, respectively. As to Datura and Brugmansia, a total of 128 and 132 genes were identified, in which 83 and 87 protein coding genes were identified, respectively; Furthermore, 37 tRNA genes and 8 rRNA genes were both identified in Datura and Brugmansia. Repeats analysis indicated that the number and type varied among species for Simple sequence repeat (SSR), long repeats, and tandem repeats ranged in number from 53 to 59, 98 to 99, and 22 to 30, respectively. Phylogenetic analysis based on the plastid genomes supported the monophyletic relationship among Datura and Brugmansia and Trompettia, and a refined phylogenic relationships among each individual was resolved. In addition, a species-specific marker was designed based on variation spot that resulted from a comparative analysis of chloroplast genomes and verified as effective maker for identification of D. stramonium and D. stramonium var. inermis. Interestingly, we found that 31 genes were likely to be under positive selection, including genes encoding ATP protein subunits, photosystem protein subunit, ribosome protein subunits, NAD(P)H dehydrogenase complex subunits, and clpP, petB, rbcL, rpoCl, ycf4, and cemA genes. These genes may function as key roles in the adaption to diverse environment during evolution. The diversification of Datureae members was dated back to the late Oligocene periods. These chloroplast genomes are useful genetic resources for taxonomy, phylogeny, and evolution for Datureae.
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Affiliation(s)
- He Su
- The Second Clinical College, Guangzhou University of Chinese Medicine, Guangzhou, China
- Key Laboratory of Quality Evaluation of Chinese Medicine of the Guangdong Provincial Medical Products Administration, Guangdong Provincial Hospital of Chinese Medicine, Guangzhou, China
| | - Xiaoxia Ding
- The Second Clinical College, Guangzhou University of Chinese Medicine, Guangzhou, China
| | - Baosheng Liao
- The Second Clinical College, Guangzhou University of Chinese Medicine, Guangzhou, China
| | - Danchun Zhang
- The Second Clinical College, Guangzhou University of Chinese Medicine, Guangzhou, China
| | - Juan Huang
- The Second Clinical College, Guangzhou University of Chinese Medicine, Guangzhou, China
- Key Laboratory of Quality Evaluation of Chinese Medicine of the Guangdong Provincial Medical Products Administration, Guangdong Provincial Hospital of Chinese Medicine, Guangzhou, China
| | - Junqi Bai
- The Second Clinical College, Guangzhou University of Chinese Medicine, Guangzhou, China
- Key Laboratory of Quality Evaluation of Chinese Medicine of the Guangdong Provincial Medical Products Administration, Guangdong Provincial Hospital of Chinese Medicine, Guangzhou, China
| | - Subing Xu
- The Second Clinical College, Guangzhou University of Chinese Medicine, Guangzhou, China
| | - Jing Zhang
- The Second Clinical College, Guangzhou University of Chinese Medicine, Guangzhou, China
- Key Laboratory of Quality Evaluation of Chinese Medicine of the Guangdong Provincial Medical Products Administration, Guangdong Provincial Hospital of Chinese Medicine, Guangzhou, China
| | - Wen Xu
- The Second Clinical College, Guangzhou University of Chinese Medicine, Guangzhou, China
- Key Laboratory of Quality Evaluation of Chinese Medicine of the Guangdong Provincial Medical Products Administration, Guangdong Provincial Hospital of Chinese Medicine, Guangzhou, China
| | - Xiaohui Qiu
- The Second Clinical College, Guangzhou University of Chinese Medicine, Guangzhou, China
- Key Laboratory of Quality Evaluation of Chinese Medicine of the Guangdong Provincial Medical Products Administration, Guangdong Provincial Hospital of Chinese Medicine, Guangzhou, China
| | - Lu Gong
- The Second Clinical College, Guangzhou University of Chinese Medicine, Guangzhou, China
- Key Laboratory of Quality Evaluation of Chinese Medicine of the Guangdong Provincial Medical Products Administration, Guangdong Provincial Hospital of Chinese Medicine, Guangzhou, China
| | - Zhihai Huang
- The Second Clinical College, Guangzhou University of Chinese Medicine, Guangzhou, China
- Key Laboratory of Quality Evaluation of Chinese Medicine of the Guangdong Provincial Medical Products Administration, Guangdong Provincial Hospital of Chinese Medicine, Guangzhou, China
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Nascimento DD, Silva EM, Lopes APM, Ferreira RJ, Carvalho VR, Santos ALZ, Correia ET, Wilcken SRS, Soares PLM. Brugmansia suaveolens as a New Host for Root-Knot Nematode, Meloidogyne incognita, in Goiás State, Brazil. PLANT DISEASE 2022; 106:1308. [PMID: 34569834 DOI: 10.1094/pdis-06-21-1193-pdn] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Affiliation(s)
- D D Nascimento
- São Paulo State University (Unesp), Faculty of Agricultural and Veterinarian Sciences (FCAV), Department of Agricultural Sciences, Nematology Laboratory (LabNema), Jaboticabal, São Paulo, Brazil
| | - E M Silva
- São Paulo State University (Unesp), Faculty of Agricultural and Veterinarian Sciences (FCAV), Department of Agricultural Sciences, Nematology Laboratory (LabNema), Jaboticabal, São Paulo, Brazil
| | - A P M Lopes
- São Paulo State University (Unesp), Faculty of Agronomic Sciences (FCA), Department of Plant Protection, Nematology Laboratory, Botucatu, São Paulo, Brazil
| | - R J Ferreira
- São Paulo State University (Unesp), Faculty of Agricultural and Veterinarian Sciences (FCAV), Department of Agricultural Sciences, Nematology Laboratory (LabNema), Jaboticabal, São Paulo, Brazil
| | - V R Carvalho
- São Paulo State University (Unesp), Faculty of Agronomic Sciences (FCA), Department of Plant Protection, Nematology Laboratory, Botucatu, São Paulo, Brazil
| | - A L Z Santos
- São Paulo State University (Unesp), Faculty of Agricultural and Veterinarian Sciences (FCAV), Department of Agricultural Sciences, Nematology Laboratory (LabNema), Jaboticabal, São Paulo, Brazil
| | - E T Correia
- São Paulo State University (Unesp), Faculty of Agricultural and Veterinarian Sciences (FCAV), Department of Agricultural Sciences, Nematology Laboratory (LabNema), Jaboticabal, São Paulo, Brazil
| | - S R S Wilcken
- São Paulo State University (Unesp), Faculty of Agronomic Sciences (FCA), Department of Plant Protection, Nematology Laboratory, Botucatu, São Paulo, Brazil
| | - P L M Soares
- São Paulo State University (Unesp), Faculty of Agricultural and Veterinarian Sciences (FCAV), Department of Agricultural Sciences, Nematology Laboratory (LabNema), Jaboticabal, São Paulo, Brazil
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Ruiz-Barrio I, Guisado-Alonso D, Bulnes-González V, Green BT. Isolated dilated pupil. BMJ 2022; 376:e069133. [PMID: 35361677 DOI: 10.1136/bmj-2021-069133] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Affiliation(s)
- Iñigo Ruiz-Barrio
- Department of Neurology, Hospital de la Santa Creu i Sant Pau, Universitat Autònoma de Barcelona, Barcelona, Spain
| | - Daniel Guisado-Alonso
- Department of Neurology, Hospital de la Santa Creu i Sant Pau, Universitat Autònoma de Barcelona, Barcelona, Spain
| | - Victoria Bulnes-González
- Department of Ophthalmology, Hospital de la Santa Creu i Sant Pau, Universitat Autònoma de Barcelona, Barcelona, Spain
| | - Benedict T Green
- Department of Pharmacology, USA Poisonous Plant Research Lab, UT, USA
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Bortolotto OC, Pazini JB. First report of Diabrotica speciosa (Germar, 1824) and Maecolaspis trivialis (Boheman, 1858) (Coleoptera: Chrysomelidae) in the angel's trumpet Brugmansia suaveolens (Humb. & Bonpl. Ex Willd.) Bercht. & J. Presl. (Solanaceae) in Brazil. BRAZ J BIOL 2021; 83:e247787. [PMID: 34730604 DOI: 10.1590/1519-6984.247787] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2021] [Accepted: 06/17/2021] [Indexed: 11/22/2022] Open
Affiliation(s)
- O C Bortolotto
- Universidade Estadual de Ponta Grossa - UEPG, Campus Uvaranas, Ponta Grossa, PR, Brasil
| | - J B Pazini
- Escola Superior de Agricultura "Luiz de Queiroz", Universidade de São Paulo - USP, Piracicaba, SP, Brasil
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Arya A, Kumar S, Paul R, Suryavanshi A, Kain D, Sahoo RN. Ethnopharmacological survey of indigenous medicinal plants of Palampur, Himachal Pradesh in north-western Himalaya, India. ADVANCES IN TRADITIONAL MEDICINE 2021. [DOI: 10.1007/s13596-021-00607-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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