Estimation of Winter Wheat Residue Coverage Using Optical and SAR Remote Sensing Images

Phenotypic Traits Estimation and Preliminary Yield Assessment in Different Phenophases of Wheat Breeding Experiment Based on UAV Multispectral Images

The utility of unmanned aerial vehicles (UAV) imagery in retrieving phenotypic data to support plant breeding research has been a topic of increasing interest in recent years. The advantages of image-based phenotyping are related to the high spatial and temporal resolution of the retrieved data and the non-destructive and rapid method of data acquisition. This study trains parametric and nonparametric regression models to retrieve leaf area index (LAI), fraction of absorbed photosynthetically active radiation (fAPAR), fractional vegetation cover (fCover), leaf chlorophyll content (LCC), canopy chlorophyll content (CCC), and grain yield (GY) of winter durum wheat breeding experiment from four-bands UAV images. A ground dataset, collected during two field campaigns and complemented with data from a previous study, is used for model development. The dataset is split at random into two parts, one for training and one for testing the models. The tested parametric models use the vegetation index formula and parametric functions. The tested nonparametric models are partial least square regression (PLSR), random forest regression (RFR), support vector regression (SVR), kernel ridge regression (KRR), and Gaussian processes regression (GPR). The retrieved biophysical variables along with traditional phenotypic traits (plant height, yield, and tillering) are analysed for detection of genetic diversity, proximity, and similarity in the studied genotypes. Analysis of variance (ANOVA), Duncan’s multiple range test, correlation analysis, and principal component analysis (PCA) are performed with the phenotypic traits. The parametric and nonparametric models show close results for GY retrieval, with parametric models indicating slightly higher accuracy (R2 = 0.49; MRSE = 0.58 kg/plot; rRMSE = 6.1%). However, the nonparametric model, GPR, computes per pixel uncertainty estimation, making it more appealing for operational use. Furthermore, our results demonstrate that grain filling was better than flowering phenological stage to predict GY. The nonparametric models show better results for biophysical variables retrieval, with GPR presenting the highest prediction performance. Nonetheless, robust models are found only for LAI (R2 = 0.48; MRSE = 0.64; rRMSE = 13.5%) and LCC (R2 = 0.49; MRSE = 31.57 mg m−2; rRMSE = 6.4%) and therefore these are the only remotely sensed phenotypic traits included in the statistical analysis for preliminary assessment of wheat productivity. The results from ANOVA and PCA illustrate that the retrieved remotely sensed phenotypic traits are a valuable addition to the traditional phenotypic traits for plant breeding studies. We believe that these preliminary results could speed up crop improvement programs; however, stronger interdisciplinary research is still needed, as well as uncertainty estimation of the remotely sensed phenotypic traits.

A Comparative Approach of Fuzzy Object Based Image Analysis and Machine Learning Techniques Which Are Applied to Crop Residue Cover Mapping by Using Sentinel-2 Satellite and UAV Imagery

Conservation tillage methods through leaving the crop residue cover (CRC) on the soil surface protect it from water and wind erosions. Hence, the percentage of the CRC on the soil surface is very critical for the evaluation of tillage intensity. The objective of this study was to develop a new methodology based on the semiautomated fuzzy object based image analysis (fuzzy OBIA) and compare its efficiency with two machine learning algorithms which include: support vector machine (SVM) and artificial neural network (ANN) for the evaluation of the previous CRC and tillage intensity. We also considered the spectral images from two remotely sensed platforms of the unmanned aerial vehicle (UAV) and Sentinel-2 satellite, respectively. The results indicated that fuzzy OBIA for multispectral Sentinel-2 image based on Gaussian membership function with overall accuracy and Cohen’s kappa of 0.920 and 0.874, respectively, surpassed machine learning algorithms and represented the useful results for the classification of tillage intensity. The results also indicated that overall accuracy and Cohen’s kappa for the classification of RGB images from the UAV using fuzzy OBIA method were 0.860 and 0.779, respectively. The semiautomated fuzzy OBIA clearly outperformed machine learning approaches in estimating the CRC and the classification of the tillage methods and also it has the potential to substitute or complement field techniques.

A Comparison of Estimating Crop Residue Cover from Sentinel-2 Data Using Empirical Regressions and Machine Learning Methods

Quantifying crop residue cover (CRC) on field surfaces is important for monitoring the tillage intensity and promoting sustainable management. Remote-sensing-based techniques have proven practical for determining CRC, however, the methods used are primarily limited to empirical regression based on crop residue indices (CRIs). This study provides a systematic evaluation of empirical regressions and machine learning (ML) algorithms based on their ability to estimate CRC using Sentinel-2 Multispectral Instrument (MSI) data. Unmanned aerial vehicle orthomosaics were used to extracted ground CRC for training Sentinel-2 data-based CRC models. For empirical regression, nine MSI bands, 10 published CRIs, three proposed CRIs, and four mean textural features were evaluated using univariate linear regression. The best performance was obtained by a three-band index calculated using (B2 − B4)/(B2 − B12), with an R2cv of 0.63 and RMSEcv of 6.509%, using a 10-fold cross-validation. The methodologies of partial least squares regression (PLSR), artificial neural network (ANN), Gaussian process regression (GPR), support vector regression (SVR), and random forest (RF) were compared with four groups of predictors, including nine MSI bands, 13 CRIs, a combination of MSI bands and mean textural features, and a combination of CRIs and textural features. In general, ML approaches achieved high accuracy. A PLSR model with 13 CRIs and textural features resulted in an accuracy of R2cv = 0.66 and RMSEcv = 6.427%. An RF model with predictors of MSI bands and textural features estimated CRC with an R2cv = 0.61 and RMSEcv = 6.415%. The estimation was improved by an SVR model with the same input predictors (R2cv = 0.67, RMSEcv = 6.343%), followed by a GPR model based on CRIs and textural features. The performance of GPR models was further improved by optimal input variables. A GPR model with six input variables, three MSI bands and three textural features, performed the best, with R2cv = 0.69 and RMSEcv = 6.149%. This study provides a reference for estimating CRC from Sentinel-2 imagery using ML approaches. The GPR approach is recommended. A combination of spectral information and textural features leads to an improvement in the retrieval of CRC.