Spatiotemporal Patterns and Phenology of Tropical Vegetation Solar-Induced Chlorophyll Fluorescence across Brazilian Biomes Using Satellite Observations

Dry season temperature and rainy season precipitation significantly affect the spatio-temporal pattern of rubber plantation phenology in Yunnan province

The ongoing global warming trajectory poses extensive challenges to plant ecosystems, with rubber plantations particularly vulnerable due to their influence on not only the longevity of the growth cycle and rubber yield, but also the complex interplay of carbon, water, and energy exchanges between the forest canopy and atmosphere. However, the response mechanism of phenology in rubber plantations to climate change remains unclear. This study concentrates on sub-optimal environment rubber plantations in Yunnan province, Southwest China. Utilizing the Google Earth Engine (GEE) cloud platform, multi-source remote sensing images were synthesized at 8-day intervals with a spatial resolution of 30-meters. The Normalized Difference Vegetation Index (NDVI) time series was reconstructed using the Savitzky-Golay (S-G) filter, coupled with the application of the seasonal amplitude method to extract three crucial phenological indicators, namely the start of the growing season (SOS), the end of the growing season (EOS), and the length of the growing season (LOS). Linear regression method, Pearson correlation coefficient, multiple stepwise regression analysis were used to extract of the phenology trend and find the relationship between SOS, EOS and climate factors. The findings demonstrated that 1) the phenology of rubber plantations has undergone dynamic changes over the past two decades. Specifically, the SOS advanced by 9.4 days per decade (R2 = 0.42, p< 0.01), whereas the EOS was delayed by 3.8 days per decade (R2 = 0.35, p< 0.01). Additionally, the LOS was extended by 13.2 days per decade (R2 = 0.55, p< 0.01); 2) rubber phenology demonstrated a notable sensitivity to temperature fluctuations during the dry season and precipitation patterns during the rainy season. The SOS advanced 2.0 days (r =-0.19, p< 0.01) and the EOS advanced 2.8 days (r =-0.35, p< 0.01) for every 1°C increase in the cool-dry season. Whereas a 100 mm increase in rainy season precipitation caused the SOS to be delayed by 2.0 days (r = 0.24, p< 0.01), a 100 mm increase in hot-dry season precipitation caused the EOS to be advanced by 7.0 days (r =-0.28, p< 0.01); 3) rubber phenology displayed a legacy effect of preseason climate variations. Changes in temperature during the fourth preseason month and precipitation during the fourth and eleventh preseason months are predominantly responsible for the variation in SOS. Meanwhile, temperature changes during the second, fourth, and ninth preseason months are primarily responsible for the variation in EOS. The study aims to enhance our understanding of how rubber plantations respond to climate change in sub-optimal environments and provide valuable insights for sustainable rubber production management in the face of changing environmental conditions.

High spatial resolution solar-induced chlorophyll fluorescence and its relation to rainfall precipitation across Brazilian ecosystems

The detection of Solar-Induced chlorophyll Fluorescence (SIF) by remote sensing has opened new perspectives on ecosystem studies and other related aspects such as photosynthesis. In general, fluorescence high-resolution studies were limited to proximal sensors, but new approaches were developed to improve SIF resolution by combining OCO-2 with MODIS orbital observations, improving its resolution from 0.5° to 0.05 on a global scale. Using a high-resolution dataset and rainfall data some SIF characteristics of the satellite were studied based across 06 contrasting ecosystems in Brazil: Amazonia, Caatinga, Cerrado, Atlantic Forest, Pampa, and Pantanal, from years 2015-2018. SIF spatial variability in each biome presented significant spatial variability structures with high R² values (>0.6, Gaussian models) in all studied years. The rainfall maps were positively and similar related to SIF spatial distribution and were able to explain more than 40% of SIF's spatial variability. The Amazon biome presented the higher SIF values (>0.4 W m^-2 sr^-1 μm^-1) and also the higher annual rainfall precipitation (around 2000 mm), while Caatinga had the lowest SIF values and precipitations (<0.1 W m^-2 sr^-1 μm^-1, precipitation around 500 mm). The linear relationship of SIF to rainfall across biomes was mostly significant (except in Pantanal) and presented contrasting sensitivities as in Caatinga SIF was mostly affected while in the Amazon, SIF was lesser affected by precipitation events. We believe that the features presented here indicate that SIF could be highly affected by rainfall precipitation changes in some Brazilian biomes. Combining rainfall with SIF allowed us to detect the differences and similarities across Brazil's biomes improving our understanding on how these ecosystems could be affected by climate change and severe weather conditions.

Proximal and remote sensing in plant phenomics: 20 years of progress, challenges, and perspectives

Plant phenomics (PP) has been recognized as a bottleneck in studying the interactions of genomics and environment on plants, limiting the progress of smart breeding and precise cultivation. High-throughput plant phenotyping is challenging owing to the spatio-temporal dynamics of traits. Proximal and remote sensing (PRS) techniques are increasingly used for plant phenotyping because of their advantages in multi-dimensional data acquisition and analysis. Substantial progress of PRS applications in PP has been observed over the last two decades and is analyzed here from an interdisciplinary perspective based on 2972 publications. This progress covers most aspects of PRS application in PP, including patterns of global spatial distribution and temporal dynamics, specific PRS technologies, phenotypic research fields, working environments, species, and traits. Subsequently, we demonstrate how to link PRS to multi-omics studies, including how to achieve multi-dimensional PRS data acquisition and processing, how to systematically integrate all kinds of phenotypic information and derive phenotypic knowledge with biological significance, and how to link PP to multi-omics association analysis. Finally, we identify three future perspectives for PRS-based PP: (1) strengthening the spatial and temporal consistency of PRS data, (2) exploring novel phenotypic traits, and (3) facilitating multi-omics communication.

Using Multi-Temporal Satellite Data to Analyse Phenological Responses of Rubber (Hevea brasiliensis) to Climatic Variations in South Sumatra, Indonesia

Land surface phenology derived from satellite data provides insights into vegetation responses to climate change. This method has overcome laborious and time-consuming manual ground observation methods. In this study, we assessed the influence of climate on phenological metrics of rubber (Hevea brasiliensis) in South Sumatra, Indonesia, between 2010 and 2019. We modelled rubber growth through the normalised difference vegetation index (NDVI), using eight-day surface reflectance images at 250 m spatial resolution, sourced from NASA’s Moderate Resolution Imaging Spectroradiometer (MODIS) Terra and Aqua satellites. The asymmetric Gaussian (AG) smoothing function was applied on the model in TIMESAT to extract three phenological metrics for each growing season: start of season (SOS), end of season (EOS), and length of season (LOS). We then analysed the effect of rainfall and temperature, which revealed that fluctuations in SOS and EOS are highly related to disturbances such as extreme rainfall and elevated temperature. Additionally, we observed inter-annual variations of SOS and EOS associated with rubber tree age and clonal variability within plantations. The 10-year monthly climate data showed a significant downward and upward trend for rainfall and temperature data, respectively. Temperature was identified as a significant factor modulating rubber phenology, where an increase in temperature of 1 °C advanced SOS by ~25 days and EOS by ~14 days. These results demonstrate the capability of remote sensing observations to monitor the effects of climate change on rubber phenology. This information can be used to improve rubber management by helping to identify critical timing for implementation of agronomic interventions.

Opportunities for the Use of Brazilian Biomass to Produce Renewable Chemicals and Materials

This Review highlights the principal crops of Brazil and how their harvest waste can be used in the chemicals and materials industries. The Review covers various plants; with grains, fruits, trees and nuts all being discussed. Native and adopted plants are included and studies on using these plants as a source of chemicals and materials for industrial applications, polymer synthesis, medicinal use and in chemical research are discussed. The main aim of the Review is to highlight the principal Brazilian agricultural resources; such as sugarcane, oranges and soybean, as well as secondary resources, such as andiroba brazil nut, buriti and others, which should be explored further for scientific and technological applications. Furthermore, vegetable oils, carbohydrates (starch, cellulose, hemicellulose, lignocellulose and pectin), flavones and essential oils are described as well as their potential applications.

Approaches of Satellite Remote Sensing for the Assessment of Above-Ground Biomass across Tropical Forests: Pan-tropical to National Scales

Tropical forests are acknowledged for providing important ecosystem services and are renowned as “the lungs of the planet Earth” due to their role in the exchange of gasses—particularly inhaling CO2 and breathing out O2—within the atmosphere. Overall, the forests provide 50% of the total plant biomass of the Earth, which accounts for 450–650 PgC globally. Understanding and accurate estimates of tropical forest biomass stocks are imperative in ascertaining the contribution of the tropical forests in global carbon dynamics. This article provides a review of remote-sensing-based approaches for the assessment of above-ground biomass (AGB) across the tropical forests (global to national scales), summarizes the current estimate of pan-tropical AGB, and discusses major advancements in remote-sensing-based approaches for AGB mapping. The review is based on the journal papers, books and internet resources during the 1980s to 2020. Over the past 10 years, a myriad of research has been carried out to develop methods of estimating AGB by integrating different remote sensing datasets at varying spatial scales. Relationships of biomass with canopy height and other structural attributes have developed a new paradigm of pan-tropical or global AGB estimation from space-borne satellite remote sensing. Uncertainties in mapping tropical forest cover and/or forest cover change are related to spatial resolution; definition adapted for ‘forest’ classification; the frequency of available images; cloud covers; time steps used to map forest cover change and post-deforestation land cover land use (LCLU)-type mapping. The integration of products derived from recent Synthetic Aperture Radar (SAR) and Light Detection and Ranging (LiDAR) satellite missions with conventional optical satellite images has strong potential to overcome most of these uncertainties for recent or future biomass estimates. However, it will remain a challenging task to map reference biomass stock in the 1980s and 1990s and consequently to accurately quantify the loss or gain in forest cover over the periods. Aside from these limitations, the estimation of biomass and carbon balance can be enhanced by taking account of post-deforestation forest recovery and LCLU type; land-use history; diversity of forest being recovered; variations in physical attributes of plants (e.g., tree height; diameter; and canopy spread); environmental constraints; abundance and mortalities of trees; and the age of secondary forests. New methods should consider peak carbon sink time while developing carbon sequestration models for intact or old-growth tropical forests as well as the carbon sequestration capacity of recovering forest with varying levels of floristic diversity.

Divergent Sensitivities of Spaceborne Solar-Induced Chlorophyll Fluorescence to Drought among Different Seasons and Regions

As a newly emerging satellite form of data, solar-induced chlorophyll fluorescence (SIF) provides a direct measurement of photosynthetic activity. The potential of SIF for drought assessment in different grassland ecosystems is not yet clear. In this study, the correlations between spaceborne SIF and nine drought indices were evaluated. Standardized precipitation evapotranspiration index (SPEI) at a 1, 3, 6, 9, 12 month scale, Palmer drought severity index (PDSI), soil moisture, temperature condition index (TCI), and vapor pressure deficit (VPD) were evaluated. The relationships between different grassland types and different seasons were compared, and the driving forces affecting the sensitivity of SIF to drought were explored. We found that the correlations between SIF and drought indices were different for temperate grasslands and alpine grasslands. The correlation coefficients between SIF and soil moisture were the highest (the mean value was 0.72 for temperate grasslands and 0.69 for alpine grasslands), followed by SPEI and PDSI at a three month scale, and the correlation coefficient between SIF and TCI was the lowest (the mean value was 0.38 for both temperate and alpine grasslands). Spaceborne SIF is more effective for drought monitoring during the peak period of the growing season (July and August). Temperature and radiation are important factors affecting the sensitivity of SIF to drought. The results from this study demonstrated the importance of SIF in drought monitoring especially for temperate grasslands in the peak growing season.

OCO-2 Solar-Induced Chlorophyll Fluorescence Variability across Ecoregions of the Amazon Basin and the Extreme Drought Effects of El Niño (2015–2016)

Amazonian ecosystems are major biodiversity hotspots and carbon sinks that may lose species to extinction and become carbon sources due to extreme dry or warm conditions. We investigated the seasonal patterns of high-resolution solar-induced chlorophyll fluorescence (SIF) measured by the satellite Orbiting Carbon Observatory-2 (OCO-2) across the Amazonian ecoregions to assess the area´s phenology and extreme drought vulnerability. SIF is an indicator of the photosynthetic activity of chlorophyll molecules and is assumed to be directly related to gross primary production (GPP). We analyzed SIF variability in the Amazon basin during the period between September 2014 and December 2018. In particular, we focused on the SIF drought response under the extreme drought period during the strong El Niño in 2015–2016, as well as the 6-month drought peak period. During the drought´s peak months, the SIF decreased and increased with different intensities across the ecoregions of the Amazonian moist broadleaf forest (MBF) biome. Under a high temperature, a high vapor pressure deficit, and extreme drought conditions, the SIF presented differences from −31.1% to +17.6%. Such chlorophyll activity variations have been observed in plant-level measurements of active fluorescence in plants undergoing physiological responses to water or heat stress. Thus, it is plausible that the SIF variations in the ecoregions’ ecosystems occurred as a result of water and heat stress, and arguably because of drought-driven vegetation mortality and collateral effects in their species composition and community structures. The SIF responses to drought at the ecoregional scale indicate that there are different levels of resilience to drought across MBF ecosystems that the currently used climate- and biome-region scales do not capture. Finally, we identified monthly SIF values of 32 ecoregions, including non-MBF biomes, which may give the first insights into the photosynthetic activity dynamics of Amazonian ecoregions.