Hybrid Chlorophyll-a Algorithm for Assessing Trophic States of a Tropical Brazilian Reservoir Based on MSI/Sentinel-2 Data

Prediction of hydrological and water quality data based on granular-ball rough set and k-nearest neighbor analysis

Hydrological and water quality datasets usually encompass a large number of characteristic variables, but not all of these significantly influence analytical outcomes. Therefore, by wisely selecting feature variables with rich information content and removing redundant features, it not only can the analysis efficiency be improved, but the model complexity can also be simplified. This paper considers introducing the granular-ball rough set algorithm for feature variable selection and combining it with the k-nearest neighbor method and back propagation network to analyze hydrological and water quality data, thus promoting overall and fused inspection. The results of hydrological water quality data analysis show that the proposed method produces better results compared to using a standalone k-nearest neighbor regressor.

GLORIA - A globally representative hyperspectral in situ dataset for optical sensing of water quality

The development of algorithms for remote sensing of water quality (RSWQ) requires a large amount of in situ data to account for the bio-geo-optical diversity of inland and coastal waters. The GLObal Reflectance community dataset for Imaging and optical sensing of Aquatic environments (GLORIA) includes 7,572 curated hyperspectral remote sensing reflectance measurements at 1 nm intervals within the 350 to 900 nm wavelength range. In addition, at least one co-located water quality measurement of chlorophyll a, total suspended solids, absorption by dissolved substances, and Secchi depth, is provided. The data were contributed by researchers affiliated with 59 institutions worldwide and come from 450 different water bodies, making GLORIA the de-facto state of knowledge of in situ coastal and inland aquatic optical diversity. Each measurement is documented with comprehensive methodological details, allowing users to evaluate fitness-for-purpose, and providing a reference for practitioners planning similar measurements. We provide open and free access to this dataset with the goal of enabling scientific and technological advancement towards operational regional and global RSWQ monitoring.

Retrieving Inland Reservoir Water Quality Parameters Using Landsat 8-9 OLI and Sentinel-2 MSI Sensors with Empirical Multivariate Regression

Improving water quality is one of the top priorities in the global agenda endorsed by the United Nations. To ensure the achievement of this goal, governments have developed plans to continuously monitor the status of inland waters. Remote sensing provides a low-cost, high-frequency, and practical complement to monitoring systems that can cover a large area. However, it is crucial to evaluate the suitability of sensors for retrieving water quality parameters (WQPs), owing to differences in spatial and spectral sampling from different satellites. Taking Shanmei Reservoir in Fuzhou City, Fujian Province as a case study, this study collected and sorted the water quality data measured at the site in 2020 to 2022 and Landsat 8-9 OLI and Sentinel-2 MSI images, simulated the chlorophyll-a (Chl-a) concentration, algae density, and turbidity using empirical multivariate regression, and explored the relationship between different WQPs using correlation analysis and principal component analysis (PCA). The results showed that the fitting effect of Landsat OLI data was better than that of the Sentinel-2 MSI data. The coefficient of determination (R2) values of Chl-a, algal density, and turbidity simulated by Landsat OLI data were 0.70, 0.81, and 0.80, respectively. Furthermore, the parameters of its validation equation were also smaller than those of Sentinel MSI data. The spatial distribution of three key WQPs retrieved from Landsat OLI data shows their values were generally low, with the mean values of the Chl-a concentration, algal density, and turbidity being 4.25 μg/L, 4.11 × 106 cells/L, and 1.86 NTU, respectively. However, from the end of February 2022, the values of the Chl-a concentration and algae density in the reservoir gradually increase, and the risk of water eutrophication also increases. Therefore, it is still necessary to pay continuous attention and formulate corresponding water quality management measures. The correlation analysis shows that the three key WQPs in this study have a high correlation with pH, water temperature (WT), and dissolved oxygen (DO). The results of PCA showed that pH, DO, Chl-a concentration, WT, TN, and CODMn were dominant in PC1, explaining 35.57% of the total variation, and conductivity, algal density, and WT were dominant in PC2, explaining 13.34% of the total variation. Therefore, the water quality of the Shanmei Reservoir can be better evaluated by measuring pH, conductivity, and WT at the monitoring station, or by establishing the regression fitting equations between DO, CODMn, and TN. The regression algorithm used in this study can identify the most important water quality features in the Shanmei Reservoir, which can be used to monitor the nutritional status of the reservoir and provide a reference for other similar inland water bodies.

Assessment of Adjacency Correction over Inland Waters Using Sentinel-2 MSI Images

Satellite remote sensing data have been used for water quality mapping, but accurate water reflectance retrieval is dependent on multiple procedures, such as atmospheric and adjacency corrections. For the latter, physical-based methods are used to minimize the adjacency effects caused by neighboring land targets close to water pixels, and implementation requires atmospheric and environmental parameters, such as aerosol optical depth and horizontal range (i.e., distance in meters) of the adjacency effect (HAdj). Generally, the HAdj is empirically defined by users and can lead to substantial errors in water reflectance when incorrectly used. In this research, a physical-based approach with three empirical methods to determine the HAdj (fixed, SIMilarity Environment Correction—SIMEC, and Adaptative Window by Proportion—AWP-Inland Water) were used to correct and characterize the adjacency effects in Sentinel-2 images over Brazilian inland waters. An interactive inversion method of the deep blue waveband estimated the aerosol loading for the atmospheric correction procedure. The results of atmospheric and adjacency corrections were validated against in-situ reflectance data. The inverted aerosol loading achieved a good agreement with in-situ measurements, especially at visible wavelengths (Mean Absolute Percentage Error—MAPE for eutrophic (~56%), bright (~80%), and dark (~288%) waters). The adjacency correction performance was near similar between the SIMEC and AWP-Inland Water methods in eutrophic and bright waters (MAPE difference < 3%). However, only the AWP-Inland Water method provided a smaller error (MAPE ~53%) for dark waters compared to the fixed (~108%) and SIMEC (~289%) methods, which shows how critical HAdj parametrization is for low water reflectance values. Simulations of different atmospheric and adjacency effects were performed, and they highlighted the importance of adjacency correction under aerosol loading higher 0.1, which is a typical aerosol loading in a dry climate season, and over extremely dark, low-reflectance waters. This paper contributes to further understanding adjacency effects in medium spatial resolution imagery of inland waters using a physical-based approach including the uncertainties in HAdj determination.

A Meta-Analysis on Harmful Algal Bloom (HAB) Detection and Monitoring: A Remote Sensing Perspective

Algae serves as a food source for a wide range of aquatic species; however, a high concentration of inorganic nutrients under favorable conditions can result in the development of harmful algal blooms (HABs). Many studies have addressed HAB detection and monitoring; however, no global scale meta-analysis has specifically explored remote sensing-based HAB monitoring. Therefore, this manuscript elucidates and visualizes spatiotemporal trends in HAB detection and monitoring using remote sensing methods and discusses future insights through a meta-analysis of 420 journal articles. The results indicate an increase in the quantity of published articles which have facilitated the analysis of sensors, software, and HAB proxy estimation methods. The comparison across multiple studies highlighted the need for a standardized reporting method for HAB proxy estimation. Research gaps include: (1) atmospheric correction methods, particularly for turbid waters, (2) the use of analytical-based models, (3) the application of machine learning algorithms, (4) the generation of harmonized virtual constellation and data fusion for increased spatial and temporal resolutions, and (5) the use of cloud-computing platforms for large scale HAB detection and monitoring. The planned hyperspectral satellites will aid in filling these gaps to some extent. Overall, this review provides a snapshot of spatiotemporal trends in HAB monitoring to assist in decision making for future studies.

Trophic state in a tropical lake based on Chlorophyll-a profiler data and Sentinel-2 images: The onset of an algal bloom event

The condition of Lake Zirahuén was evaluated before and after a significant algal bloom took place. The state of the lake was tracked using measurements of chlorophyll-a concentration from a fluorometer attached to a conductivity, temperature, and depth (CTD) profiler and complemented with the use of satellite images from Sentinel-2. It was found that the current state of the lake is in transition from an oligotrophic to a mesotrophic level with some evidence of deterioration, but still being considered as a clear lake. With the use of empirical algorithms to retrieve chlorophyll-a from satellite data it was found that the images presented an acceptable feasibility (R²  = 0.64). The observed algal bloom was detected one month before the algae reached its major extent, being the reflectiveness of the green band a good indicator of the onset of the algal bloom event. Favorable conditions for the algal bloom were also recorded two months before its major extend through a chain of thermistors. PRACTITIONER POINTS: The trophic state of Lake Zirahuén was evaluated before and after a significant algal bloom took place. The lake is classified as being in transition from oligotrophic to mesotrophic. Nonetheless, it continues to have good clarity. Satellite images improve in the description of the spatial-temporal variability of the lake. In particular, the green band reflectiveness.

AlgaeMAp: Algae Bloom Monitoring Application for Inland Waters in Latin America

Due to increasing algae bloom occurrence and water degradation on a global scale, there is a demand for water quality monitoring systems based on remote sensing imagery. This paper describes the scientific, theoretical, and methodological background for creating a cloud-computing interface on Google Earth Engine (GEE) which allows end-users to access algae bloom related products with high spatial (30 m) and temporal (~5 day) resolution. The proposed methodology uses Sentinel-2 images corrected for atmospheric and sun-glint effects to generate an image collection of the Normalized Difference Chlorophyll-a Index (NDCI) for the entire time-series. NDCI is used to estimate both Chl-a concentration, based on a non-linear fitting model, and Trophic State Index (TSI), based on a tree-decision model classification into five classes. Once the Chl-a and TSI algorithms had been calibrated and validated they were implemented in GEE as an Earth Engine App, entitled Algae Bloom Monitoring Application (AlgaeMAp). AlgaeMAp is the first online platform built within the GEE platform that offers high spatial resolution of water quality parameters. The App benefits from the huge processing capability of GEE that allows any user with internet access to easily extract detailed spatial (30 m) and long temporal Chl-a and TSI information (from August 2015 and with images every 5 days) throughout the most important reservoirs in the State of São Paulo/Brazil. The application will be adapted to extend to other relevant areas in Latin America.

Water quality assessment using Sentinel-2 imagery with estimates of chlorophyll a, Secchi disk depth, and Cyanobacteria cell number: the Cantareira System reservoirs (São Paulo, Brazil)

Satellite images were used to assess surface water quality based on the concentration of chlorophyll a (chla), light penetration measured by the Secchi disk method (SD), and the Cyanobacteria cells number per mL (cyano). For this case study, six reservoirs interconnected were evaluated, comprising the Cantareira System (CS) in São Paulo State (Brazil). The work employed Sentinel-2 images from 2015 to 2018, SNAP image processing software, and the native products conc_chl and kd_z90max, treated using Case 2 Regional Coast Color (C2RCC) atmospheric correction. The database was obtained from CETESB, the agency legally responsible for operation of the Inland Water Quality Monitoring Network in São Paulo State. The results demonstrated robustness in the estimates of chla (RMSE = 3.73; NRMSE% = 19%) and SD (RMSE = 2,26; NRMSE% = 14%). Due to the strong relationship between cyano and chla (r² = 0.84, p < 0.01, n = 90), both obtained from field measurements, there was also robustness in cyano estimates based on the estimates of chla from the satellite images. The data revealed a clear pattern, with the upstream reservoirs being more eutrophic, compared to those downstream. There were evident concerns, about water quality, particularly due to the high numbers of Cyanobacteria cells, especially in the upstream reservoirs.

Remote sensing of CDOM and DOC in alpine lakes across the Qinghai-Tibet Plateau using Sentinel-2A imagery data

As important components of dissolved organic matter (DOM) in an aquatic environment, colored DOM (CDOM) and dissolved organic carbon (DOC) play an essential role in the carbon cycle of an inland aquatic system. Traditionally, CDOM and DOC in inland waters have been primarily determined using in situ observations and laboratory measurements. Most of past lake investigations on CDOM and DOC focused on easily accessible regions and covered a small fraction of lakes worldwide. To our knowledge, little is known about lakes in less accessible areas like the Qinghai-Tibet Plateau (QTP). To address this challenge, optical satellite remote sensing might be useful for capturing a synoptic view of CDOM and DOC with high frequency at large scales, complementing in situ sampling methods for inland waters. In this study, 216 samples collected from 36 lakes across the QTP (2014-2017) were examined to determine the relationships between CDOM absorption coefficient at 350 nm (a₃₅₀) and Sentinel-2A Multi Spectral Instrument (MSI) imagery reflectance data. A strong positive linear correlation with a₃₅₀ was observed with B4/B2 (R² = 0.78, p < 0.01) and with B4/B3 (R² = 0.62). A multi-step regression model was established for estimating a₃₅₀ with B4/B2 and B4/B3 as input variables (R² = 0.81, p < 0.01). A scattered CDOM-DOC relationship was revealed (R² = 0.34, p < 0.05) using a pooled dataset. By dividing the inland waters into four separate groups in accordance with their salinity gradients, we were able to develop much stronger relationships (R² > 0.8, p < 0.01) for CDOM-DOC. Significant differences between fresh and saline waters were demonstrated using satellite-derived CDOM and DOC, where high CDOM (0.86 ± 0.67 m^-1) and low DOC (3.76 ± 4.92 mg L^-1) concentrations were observed for freshwaters, while inverse trends of CDOM (0.53 ± 0.72 m^-1) and DOC (15.76 ± 17.07 mg L^-1) were demonstrated for saline lakes in the Tibetan Plateau. This study confirmed that satellite optical imagery can be used for the monitoring of CDOM and DOC of the lakes of the Tibetan Plateau, which are sensitive to a changing climate and are infrequently investigated due to the harsh environment and poor accessibility. Moreover, it highlighted the importance of combining salinity and remote sensing data in the process of estimating lake DOC.

Remote estimates of CDOM using Sentinel-2 remote sensing data in reservoirs with different trophic states across China

Chromophoric dissolved organic matter (DOM) is called as CDOM which could affect the optical properties of surface waters, and is a useful parameter for monitoring complex inland aquatic systems. Large-scale monitoring of CDOM using remote-sensing has been a challenge due to the poor transferability of CDOM retrieval models across regions. To overcome these difficulties, a study is conducted using Sentinel-2 images, in situ reflectance spectral data, and water chemical parameters at 93 water reservoirs across China classified by trophic state. Empirical algorithms are established between CDOM absorption coefficient a_CDOM(355) and reflectance band ratio (B5/B2,vegetation Red Edge/Blue) acquired in situ and via Sentinel-2 MSI sensors. Relationships are stronger (r² > 0.7, p < 0.05) when analysis is conducted separately by trophic states. Validation models show that, by accounting for trophic state of reservoirs and using B5/B2 band ratios, it is possible to expand the geographical range of remote sensing-based models to determine CDOM. However, the accuracy of model validation decreased from oligotrophic (r²: 0.86) to eutrophic reservoirs (r²: 0.82), likely due to increased complexity of CDOM sources in nutrient-rich systems. This study provides a strategy for using local and remote-sensing data to monitor the spatial variations of CDOM in reservoirs based on different trophic states, and will contribute to water resources management.

Validation of Water Quality Monitoring Algorithms for Sentinel-2 and Sentinel-3 in Mediterranean Inland Waters with In Situ Reflectance Data

Freshwater quality maintenance is essential for human use and ecological functions. To ensure this objective, governments establish programs for a continuous monitoring of the inland waters state. This could be possible with Sentinel-2 (S2) and Sentinel-3 (S3), two remote sensing satellites of the European Space Agency, equipped with spectral optical sensors. To determine optimal water quality algorithms applicable to their spectral bands, 36 algorithms were tested for different key variables (chlorophyll a (Chl_a), colored dissolved organic matter (CDOM), colored dissolved organic matter (TSS), phycocyanin (PC) and Secchi disk depth (SDD)). A database of 296 water-leaving reflectance spectra were used, as well as concomitant water quality measurements of Mediterranean reservoirs and lakes of Spain. Two equal data sets were used for calibration and validation. The best algorithms were recalculated using all database and used the following band relations: SDD, R560/R700; CDOM, R665/R490; PC, R705/R665 for S2 and R620, R665, R709 and R779 for S3, using a semi-analytical algorithm; R700 for TSS < 20 mg/L and R783/R492 (S2) or R779/R510 (S3) for TSS > 20 mg/L; and for Chl_a, the maximum (R443; R492)/R560 for Chl_a < 5 mg/m3 and R700/R665 for Chl_a > 5 mg/m3. A preliminary test with a satellite image in a well-known reservoir showed results consistent with the expected ranges and spatial patterns of the variables.