Determination of Phycocyanin from Space—A Bibliometric Analysis

Deep learning-based efficient drone-borne sensing of cyanobacterial blooms using a clique-based feature extraction approach

Recent advances in remote sensing techniques provide a new horizon for monitoring the spatiotemporal variations of harmful algal blooms (HABs) using hyperspectral data in inland water. In this study, a hierarchical concatenated variational autoencoder (HCVAE) is proposed as an efficient and accurate deep learning (DL) based bio-optical model. To demonstrate its usefulness in retrieving algal pigments, the HCVAE is applied to bloom-prone regions in Daecheong Lake, South Korea. By abstracting the similarity between highly related features using layer-wise clique-based latent-feature extraction, HCVAE reduces the computational loads in deriving outputs while preventing performance degradation. Graph-based clique-detection uses information theory-based criteria to group the related reflectance spectra. Consequently, six latent features were extracted from 79 spectral bands to consist of a multilevel hierarchy of HCVAE that can simultaneously estimate concentrations of chlorophyll-a (Chl-a) and phycocyanin (PC). Despite the parsimonious model architecture, the Chl-a and PC concentrations estimated by HCVAE closely agree with the measured concentrations, with test R2 values of 0.76 and 0.82, respectively. In addition, spatial distribution maps of algal pigments obtained from HCVAE using drone-borne reflectance successfully capture the blooming spots. Based on its multilevel hierarchical architecture, HCVAE can provide the importance of latent features along with their individual wavelengths using Shapley additive explanations. The most important latent features covered the spectral regions associated with both Chl-a and PC. The lightweight neural network DNNsel, which uses only the spectral bands of highest importance in latent-feature extraction, performed comparably to HCVAE. The study results demonstrate the utility of the multilevel hierarchical architecture as a comprehensive assessment model for near-real-time drone-borne sensing of HABs. Moreover, HCVAE is applicable to a wide range of environmental big data, as it can handle numerous sets of features.

Remote estimation of phycocyanin concentration in inland waters based on optical classification

In recent years, under the dual pressure of climate change and human activities, the cyanobacteria blooms in inland waters have become a threat to global aquatic ecosystems and the environment. Phycocyanin (PC), a diagnostic pigment of cyanobacteria, plays an essential role in the detection and early warning of cyanobacterial blooms. In this context, accurate estimation of PC concentration in turbid waters by remote sensing is challenging due to optical complexity and weak optical signal. In this study, we collected a comprehensive dataset of 640 pairs of in situ measured pigment concentration and the Ocean and Land Color Instrument (OLCI) reflectance from 25 lakes and reservoirs in China during 2020-2022. We then developed a framework consisting of the water optical classification algorithm and three candidate algorithms: baseline height, band ratio, and three-band algorithm. The optical classification method used remote sensing reflectance (Rrs) baseline height in three bands: Rrs(560), Rrs(647) and Rrs(709) to classify the samples into five types, each with a specific spectral shape and water quality character. The improvement of PC estimation accuracy for optically classified waters was shown by comparison with unclassified waters with RMSE = 72.6 μg L-1, MAPE = 80.4 %, especially for the samples with low PC concentration. The results show that the band ratio algorithm has a strong universality, which is suitable for medium turbid and clean water. In addition, the three-band algorithm is only suitable for medium turbid water, and the line height algorithm is only suitable for high PC content water. Furthermore, the five distinguished types with significant differences in the value of the PC/Chla ratio well indicated the risk rank assessment of cyanobacteria. In conclusion, the proposed framework in this paper solved the problem of PC estimation accuracy problem in optically complex waters and provided a new strategy for water quality inversion in inland waters.

Determining the Spectral Requirements for Cyanobacteria Detection for the CyanoSat Hyperspectral Imager with Machine Learning

This study determines an optimal spectral configuration for the CyanoSat imager for the discrimination and retrieval of cyanobacterial pigments using a simulated dataset with machine learning (ML). A minimum viable spectral configuration with as few as three spectral bands enabled the determination of cyanobacterial pigments phycocyanin (PC) and chlorophyll-a (Chl-a) but may not be suitable for determining cyanobacteria composition. A spectral configuration with about nine ideally positioned spectral bands enabled estimation of the cyanobacteria-to-algae ratio (CAR) and pigment concentrations with almost the same accuracy as using all 300 spectral channels. A narrower spectral band full-width half-maximum (FWHM) did not provide improved performance compared to the nominal 12 nm configuration. In conclusion, continuous sampling of the visible spectrum is not a requirement for cyanobacterial detection, provided that a multi-spectral configuration with ideally positioned, narrow bands is used. The spectral configurations identified here could be used to guide the selection of bands for future ocean and water color radiometry sensors.

Rapid in situ assessment of high-resolution spatial and temporal distribution of cyanobacterial blooms using fishery echosounder

Cyanobacterial blooms are increasing in frequency, magnitude, and duration globally because of enhanced eutrophication and climate change. Thus, comprehensive investigation and systematic monitoring of the spatial and temporal distribution of cyanobacteria in aquatic environments are urgently needed to better understand bloom development and complex interactions within a dynamic environment. Various methods have been used to investigate the distribution of cyanobacteria, however, none of them can provide high-resolution data for the three-dimensional spatial structure of the bloom and its dynamics in real time. In the present study, we investigated the applicability of a high-frequency (200 kHz) fishery echosounder, a type widely used in fisheries acoustics, to detect and estimate the cyanobacterial genus Microcystis bloom distribution and biomass in a shallow lake (Sulejów Reservoir, Poland). Verification of the usefulness of in situ acoustic quantification of bloom-forming cyanobacteria was based on a comparison of acoustic estimates of cyanobacterial biomass with the ground truth-that is, fluorometric measurements and chlorophyll a concentrations. We compared the acoustic estimates with other methods for continuous measurements along 10 predetermined parallel transects and point samples at 14 stations situated on the transects. In vertical hydroacoustic measurements at night, we observed that cyanobacterial biomass was highest in the uppermost layer and diminished continuously with depth. For both horizontal and vertical continuous measurements, we found significant positive correlations between acoustic and fluorometric estimates of cyanobacterial biomass. The traditional point samples measurements, however, did not agree equally well with the acoustic estimates, especially for vertical beam. We argue that the point measurements have more stochastic character and less adequately describe dynamic changes in the cyanobacteria distribution than continuous acoustic estimates. More studies are required to explore the cyanobacteria distribution patterns under different biological, physical, and meteorological conditions.

Satellite Altimetry: Achievements and Future Trends by a Scientometrics Analysis

Scientometric reviews, facilitated by computational and visual analytical approaches, allow researchers to gain a thorough understanding of research trends and areas of concentration from a large number of publications. With the fast development of satellite altimetry, which has been effectively applied to a wide range of research topics, it is timely to summarize the scientific achievements of the previous 50 years and identify future trends in this field. A comprehensive overview of satellite altimetry was presented using a total of 8541 publications from the Web of Science Core Collection covering the years from 1970 to 2021. We begin by presenting the fundamental statistical results of the publications, such as the annual number of papers, study categories, countries/regions, afflictions, journals, authors, and keywords, in order to provide a comprehensive picture of satellite altimetry research. We discuss the co-occurrence of the authors in order to reveal the global collaboration network of satellite altimetry research. Finally, we utilised co-citation networks to detect the development trend and associated crucial publications for various specific topics. The findings show that satellite altimetry research has been changed immensely during the last half-century. The United States, France, China, England, and Germany made the most significant contributions in the field of satellite altimetry. The analysis reveals a clear link between technology advancements and the trend in satellite altimetry research. As a result, wide swath altimetry, GNSS-reflectometry, laser altimetry, terrestrial hydrology, and deep learning are among the most frontier study subjects. The findings of this work could guide a thorough understanding of satellite altimetry’s overall development and research front.

Bacterial, Phytoplankton, and Viral Distributions and Their Biogeochemical Contexts in Meromictic Lake Cadagno Offer Insights into the Proterozoic Ocean Microbial Loop

Lake Cadagno, a permanently stratified high-alpine lake with a persistent microbial bloom in its chemocline, has long been considered a model for the low-oxygen, high-sulfide Proterozoic ocean. Although the lake has been studied for over 25 years, the absence of concerted study of the bacteria, phytoplankton, and viruses, together with primary and secondary production, has hindered a comprehensive understanding of its microbial food web. Here, the identities, abundances, and productivity of microbes were evaluated in the context of Lake Cadagno biogeochemistry. Photosynthetic pigments together with 16S rRNA gene phylogenies suggest the prominence of eukaryotic phytoplankton chloroplasts, primarily chlorophytes. Chloroplasts closely related to those of high-alpine-adapted Ankyra judayi persisted with oxygen in the mixolimnion, where photosynthetic efficiency was high, while chloroplasts of Closteriopsis-related chlorophytes peaked in the chemocline and monimolimnion. The anoxygenic phototrophic sulfur bacterium Chromatium dominated the chemocline along with Lentimicrobium, a genus of known fermenters. Secondary production peaked in the chemocline, which suggested that anoxygenic primary producers depended on heterotrophic nutrient remineralization. The virus-to-microbe ratio peaked with phytoplankton abundances in the mixolimnion and were at a minimum where Chromatium abundance was highest, trends that suggest that viruses may play a role in the modulation of primary production. Through the combined analysis of bacterial, eukaryotic, viral, and biogeochemical spatial dynamics, we provide a comprehensive synthesis of the Lake Cadagno microbial loop. This study offers a new ecological perspective on how biological and geochemical connections may have occurred in the chemocline of the Proterozoic ocean, where eukaryotic microbial life is thought to have evolved.

Monitoring Cyanobacteria Bloom in Dianchi Lake Based on Ground-Based Multispectral Remote-Sensing Imaging: Preliminary Results

Some lakes in China have undergone serious eutrophication, with cyanobacterial blooms occurring frequently. Dynamic monitoring of cyanobacterial blooms is important. At present, the traditional lake-survey-based cyanobacterial bloom monitoring is spatiotemporally limited and requires considerable human and material resources. Although satellite remote sensing can rapidly monitor large-scale cyanobacterial blooms, clouds and other factors often mean that effective images cannot be obtained. It is also difficult to use this method to dynamically monitor and manage aquatic environments and provide early warnings of cyanobacterial blooms in lakes and reservoirs. In contrast, ground-based remote sensing can operate under cloud cover and thus act as a new technical method to dynamically monitor cyanobacterial blooms. In this study, ground-based remote-sensing technology was applied to multitemporal, multidirectional, and multiscene monitoring of cyanobacterial blooms in Dianchi Lake via an area array multispectral camera mounted on a rotatable cloud platform at a fixed station. Results indicate that ground-based imaging remote sensing can accurately reflect the spatiotemporal distribution characteristics of cyanobacterial blooms and provide timely and accurate data for salvage treatment and early warnings. Thus, ground-based multispectral remote-sensing data can operationalize the dynamic monitoring of cyanobacterial blooms. The methods and results from this study can provide references for monitoring such blooms in other lakes.