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Hnizil O, Baidani A, Khlila I, Nsarellah N, Laamari A, Amamou A. Integrating NDVI, SPAD, and Canopy Temperature for Strategic Nitrogen and Seeding Rate Management to Enhance Yield, Quality, and Sustainability in Wheat Cultivation. PLANTS (BASEL, SWITZERLAND) 2024; 13:1574. [PMID: 38891382 PMCID: PMC11174591 DOI: 10.3390/plants13111574] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2024] [Revised: 05/29/2024] [Accepted: 06/02/2024] [Indexed: 06/21/2024]
Abstract
This study explores the interplay between nitrogen doses and seeding rates on wheat yield, biomass, and protein content. Utilizing tools such as the Normalized Difference Vegetation Index (NDVI), Soil Plant Analysis Development (SPAD) measurements, and canopy temperature (CT), we conducted experiments over five growing seasons. The treatments included three nitrogen levels (0, 60, 120 kg/ha) and three seeding rates (300, 400, 500 seeds/m2) in a split-plot design with 90 plots and two replications. Our results show that an intermediate nitrogen dose (60 kg/ha) combined with a moderate seed rate (400 seeds/m2) enhances wheat yield by 22.95%. Reduced nitrogen levels increased protein content, demonstrating wheat's adaptive mechanisms under nitrogen constraints. NDVI analysis highlighted significant growth during the tillering phase with high nitrogen, emphasizing early-stage nutrient management. SPAD measurements showed that early nitrogen applications boost chlorophyll content, essential for vigorous early growth, while CT data indicate that optimal nitrogen and seed rates can effectively modulate plant stress responses. As crops mature, the predictive capacity of NDVI declines, indicating the need for adjusted nitrogen strategies. Collectively, these findings advocate for refined management of nitrogen and seeding rates, integrating NDVI, SPAD, and CT assessments to enhance yields and promote sustainable agricultural practices while minimizing environmental impacts.
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Affiliation(s)
- Oussama Hnizil
- Research Unit of Plant Breeding and Genetic Resources Conservation, Regional Center of Agricultural Research of Settat, National Institute of Agricultural Research, P.O. Box 589, Settat 26000, Morocco; (I.K.); (N.N.)
- Laboratory of Agrifood and Health, Faculty of Sciences and Techniques, Hassan First University of Settat, P.O. Box 577, Settat 26000, Morocco;
| | - Aziz Baidani
- Laboratory of Agrifood and Health, Faculty of Sciences and Techniques, Hassan First University of Settat, P.O. Box 577, Settat 26000, Morocco;
| | - Ilham Khlila
- Research Unit of Plant Breeding and Genetic Resources Conservation, Regional Center of Agricultural Research of Settat, National Institute of Agricultural Research, P.O. Box 589, Settat 26000, Morocco; (I.K.); (N.N.)
- Laboratory of Agrifood and Health, Faculty of Sciences and Techniques, Hassan First University of Settat, P.O. Box 577, Settat 26000, Morocco;
| | - Nasserelhaq Nsarellah
- Research Unit of Plant Breeding and Genetic Resources Conservation, Regional Center of Agricultural Research of Settat, National Institute of Agricultural Research, P.O. Box 589, Settat 26000, Morocco; (I.K.); (N.N.)
| | - Abdelali Laamari
- Dryland Research Center, National Institute of Agricultural Research, P.O. Box 589, Settat 26000, Morocco;
| | - Ali Amamou
- Research Unit of Plant Breeding and Genetic Resources Conservation, Regional Center of Agricultural Research of Settat, National Institute of Agricultural Research, P.O. Box 589, Settat 26000, Morocco; (I.K.); (N.N.)
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Erlandsson R, Arneberg M, Tømmervik H, Finne E, Nilsen L, Bjerke J. Feasibility of active handheld NDVI sensors for monitoring lichen ground cover. FUNGAL ECOL 2023. [DOI: 10.1016/j.funeco.2023.101233] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/07/2023]
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Gracia-Romero A, Rufo R, Gómez-Candón D, Soriano JM, Bellvert J, Yannam VRR, Gulino D, Lopes MS. Improving in-season wheat yield prediction using remote sensing and additional agronomic traits as predictors. FRONTIERS IN PLANT SCIENCE 2023; 14:1063983. [PMID: 37077632 PMCID: PMC10106603 DOI: 10.3389/fpls.2023.1063983] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/07/2022] [Accepted: 03/16/2023] [Indexed: 05/03/2023]
Abstract
The development of accurate grain yield (GY) multivariate models using normalized difference vegetation index (NDVI) assessments obtained from aerial vehicles and additional agronomic traits is a promising option to assist, or even substitute, laborious agronomic in-field evaluations for wheat variety trials. This study proposed improved GY prediction models for wheat experimental trials. Calibration models were developed using all possible combinations of aerial NDVI, plant height, phenology, and ear density from experimental trials of three crop seasons. First, models were developed using 20, 50 and 100 plots in training sets and GY predictions were only moderately improved by increasing the size of the training set. Then, the best models predicting GY were defined in terms of the lowest Bayesian information criterion (BIC) and the inclusion of days to heading, ear density or plant height together with NDVI in most cases were better (lower BIC) than NDVI alone. This was particularly evident when NDVI saturates (with yields above 8 t ha-1) with models including NDVI and days to heading providing a 50% increase in the prediction accuracy and a 10% decrease in the root mean square error. These results showed an improvement of NDVI prediction models by the addition of other agronomic traits. Moreover, NDVI and additional agronomic traits were unreliable predictors of grain yield in wheat landraces and conventional yield quantification methods must be used in this case. Saturation and underestimation of productivity may be explained by differences in other yield components that NDVI alone cannot detect (e.g. differences in grain size and number).
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Affiliation(s)
- Adrian Gracia-Romero
- Field Crops Program, Institute for Food and Agricultural Research and Technology (IRTA), Lleida, Spain
| | - Rubén Rufo
- Field Crops Program, Institute for Food and Agricultural Research and Technology (IRTA), Lleida, Spain
| | - David Gómez-Candón
- Efficient Use of Water in Agriculture Program, Institute for Food and Agricultural Research and Technology (IRTA), Lleida, Spain
| | - José Miguel Soriano
- Field Crops Program, Institute for Food and Agricultural Research and Technology (IRTA), Lleida, Spain
| | - Joaquim Bellvert
- Efficient Use of Water in Agriculture Program, Institute for Food and Agricultural Research and Technology (IRTA), Lleida, Spain
| | - Venkata Rami Reddy Yannam
- Field Crops Program, Institute for Food and Agricultural Research and Technology (IRTA), Lleida, Spain
| | - Davide Gulino
- Field Crops Program, Institute for Food and Agricultural Research and Technology (IRTA), Lleida, Spain
| | - Marta S. Lopes
- Field Crops Program, Institute for Food and Agricultural Research and Technology (IRTA), Lleida, Spain
- *Correspondence: Marta S. Lopes,
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Spectral Reflectance Indices as a High Throughput Selection Tool in a Sesame Breeding Scheme. REMOTE SENSING 2022. [DOI: 10.3390/rs14112629] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
On-farm genotype screening is at the core of every breeding scheme, but it comes with a high cost and often high degree of uncertainty. Phenomics is a new approach by plant breeders, who use optical sensors for accurate germplasm phenotyping, selection and enhancement of the genetic gain. The objectives of this study were to: (1) develop a high-throughput phenotyping workflow to estimate the Normalized Difference Vegetation Index (NDVI) and the Normalized Difference Red Edge index (NDRE) at the plot-level through an active crop canopy sensor; (2) test the ability of spectral reflectance indices (SRIs) to distinguish between sesame genotypes throughout the crop growth period; and (3) identify specific stages in the sesame growth cycle that contribute to phenotyping accuracy and functionality and evaluate the efficiency of SRIs as a selection tool. A diversity panel of 24 sesame genotypes was grown at normal and late planting dates in 2020 and 2021. To determine the SRIs the Crop Circle ACS-430 active crop canopy sensor was used from the beginning of the sesame reproductive stage to the end of the ripening stage. NDVI and NDRE reached about the same high accuracy in genotype phenotyping, even under dense biomass conditions where “saturation” problems were expected. NDVI produced higher broad-sense heritability (max 0.928) and NDRE higher phenotypic and genotypic correlation with the yield (max 0.593 and 0.748, respectively). NDRE had the highest relative efficiency (61%) as an indirect selection index to yield direct selection. Both SRIs had optimal results when the monitoring took place at the end of the reproductive stage and the beginning of the ripening stage. Thus, an active canopy sensor as this study demonstrated can assist breeders to differentiate and classify sesame genotypes.
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A Flexible Multi-Temporal and Multi-Modal Framework for Sentinel-1 and Sentinel-2 Analysis Ready Data. REMOTE SENSING 2022. [DOI: 10.3390/rs14051120] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
The rich, complementary data provided by Sentinel-1 and Sentinel-2 satellite constellations host considerable potential to transform Earth observation (EO) applications. However, a substantial amount of effort and infrastructure is still required for the generation of analysis-ready data (ARD) from the low-level products provided by the European Space Agency (ESA). Here, a flexible Python framework able to generate a range of consistent ARD aligned with the ESA-recommended processing pipeline is detailed. Sentinel-1 Synthetic Aperture Radar (SAR) data are radiometrically calibrated, speckle-filtered and terrain-corrected, and Sentinel-2 multi-spectral data resampled in order to harmonise the spatial resolution between the two streams and to allow stacking with multiple scene classification masks. The global coverage and flexibility of the framework allows users to define a specific region of interest (ROI) and time window to create geo-referenced Sentinel-1 and Sentinel-2 images, or a combination of both with closest temporal alignment. The framework can be applied to any location and is user-centric and versatile in generating multi-modal and multi-temporal ARD. Finally, the framework handles automatically the inherent challenges in processing Sentinel data, such as boundary regions with missing values within Sentinel-1 and the filtering of Sentinel-2 scenes based on ROI cloud coverage.
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Danilevicz MF, Bayer PE, Nestor BJ, Bennamoun M, Edwards D. Resources for image-based high-throughput phenotyping in crops and data sharing challenges. PLANT PHYSIOLOGY 2021; 187:699-715. [PMID: 34608963 PMCID: PMC8561249 DOI: 10.1093/plphys/kiab301] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2020] [Accepted: 05/26/2021] [Indexed: 05/06/2023]
Abstract
High-throughput phenotyping (HTP) platforms are capable of monitoring the phenotypic variation of plants through multiple types of sensors, such as red green and blue (RGB) cameras, hyperspectral sensors, and computed tomography, which can be associated with environmental and genotypic data. Because of the wide range of information provided, HTP datasets represent a valuable asset to characterize crop phenotypes. As HTP becomes widely employed with more tools and data being released, it is important that researchers are aware of these resources and how they can be applied to accelerate crop improvement. Researchers may exploit these datasets either for phenotype comparison or employ them as a benchmark to assess tool performance and to support the development of tools that are better at generalizing between different crops and environments. In this review, we describe the use of image-based HTP for yield prediction, root phenotyping, development of climate-resilient crops, detecting pathogen and pest infestation, and quantitative trait measurement. We emphasize the need for researchers to share phenotypic data, and offer a comprehensive list of available datasets to assist crop breeders and tool developers to leverage these resources in order to accelerate crop breeding.
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Affiliation(s)
- Monica F. Danilevicz
- School of Biological Sciences and Institute of Agriculture, University of Western Australia, Perth, Western Australia 6009, Australia
| | - Philipp E. Bayer
- School of Biological Sciences and Institute of Agriculture, University of Western Australia, Perth, Western Australia 6009, Australia
| | - Benjamin J. Nestor
- School of Biological Sciences and Institute of Agriculture, University of Western Australia, Perth, Western Australia 6009, Australia
| | - Mohammed Bennamoun
- Department of Computer Science and Software Engineering, University of Western Australia, Perth, Western Australia 6009, Australia
| | - David Edwards
- School of Biological Sciences and Institute of Agriculture, University of Western Australia, Perth, Western Australia 6009, Australia
- Author for communication:
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Methodology for the Definition of Durum Wheat Yield Homogeneous Zones by Using Satellite Spectral Indices. REMOTE SENSING 2021. [DOI: 10.3390/rs13112036] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
One of the main questions facing precision agriculture is the evaluation of different algorithms for the delineation of homogeneous management zones. In the present study, a new approach based on the use of time series of satellite imagery, collected during two consecutive growing seasons, was proposed. Texture analysis performed using the Gray-Level Co-Occurrence Matrix (GLCM) was used to integrate and correct the sum of the vegetation indices maps (NDVI and MCARI2) and define the homogenous productivity zones on ten durum wheat fields in southern Italy. The homogenous zones identified through the method that integrates the GLCM indices with the spectral indices studied showed a greater accuracy (0.18–0.22 Mg ha−1 for ∑NDVIs + GLCM and 0.05–0.49 Mg ha−1 for ∑MCARI2s + GLCM) with respect to the methods that considered only the sum of the indices. Best results were also obtained with respect to the homogeneous zones derived by using yield maps of the previous year or vegetation indices acquired in a single day. Therefore, the survey methods based on the data collected over the entire study period provided the best results in terms of estimated yield; the addition of clustering analysis performed with the GLCM method allowed to further improve the accuracy of the estimate and better define homogeneous productivity zones of durum wheat fields.
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Aranguren M, Castellón A, Aizpurua A. Wheat Grain Protein Content under Mediterranean Conditions Measured with Chlorophyll Meter. PLANTS 2021; 10:plants10020374. [PMID: 33672001 PMCID: PMC7919282 DOI: 10.3390/plants10020374] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/28/2021] [Revised: 02/09/2021] [Accepted: 02/11/2021] [Indexed: 11/22/2022]
Abstract
Adequate N fertilisation is crucial to increase the grain protein content (GPC) values in wheat. The recommended level of GPC needed to achieve high-quality bread-making flour should be higher than 12.5%. However, it is difficult to ensure the GPC values that the crop will achieve because N in grain is derived from two different sources: N remobilized into the grain from N accumulated in the pre-anthesis period, and N absorbed from the soil in the post-anthesis period. This study aimed to (i) evaluate the effect of the application of N on the rate of stem elongation (GS30) when farmyard manures are applied as initial fertilisers on GPC and on the chlorophyll meter (CM) values at mid-anthesis (GS65), (ii) establish a relationship between the CM values at GS65 and GPC, and (iii) determine a minimum CM value at GS65 to obtain GPC values above 12.5%. Three field trials were performed in three consecutive growing seasons, and different N fertilisation doses were applied. Readings using the CM Yara N-TesterTM were taken at GS65. The type of initial fertiliser did not affect the GPC and CM values. Generally, the greater the N application at GS30 is, the higher the GPC and CM values are. CM values can help to estimate GPC values only when yields are below 8000 kg ha−1. Additionally, CM values at GS65 should be higher than 700 to achieve high-quality bread-making flour (12.5%) at such yield levels. These results will allow farmers and cooperatives to make better decisions regarding late-nitrogen fertilisation and wheat sales.
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