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Zununjan Z, Turghan MA, Sattar M, Kasim N, Emin B, Abliz A. Combining the fractional order derivative and machine learning for leaf water content estimation of spring wheat using hyper-spectral indices. PLANT METHODS 2024; 20:97. [PMID: 38909230 PMCID: PMC11193302 DOI: 10.1186/s13007-024-01224-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/25/2023] [Accepted: 06/10/2024] [Indexed: 06/24/2024]
Abstract
Leaf water content (LWC) is a vital indicator of crop growth and development. While visible and near-infrared (VIS-NIR) spectroscopy makes it possible to estimate crop leaf moisture, spectral preprocessing and multiband spectral indices have important significance in the quantitative analysis of LWC. In this work, the fractional order derivative (FOD) was used for leaf spectral processing, and multiband spectral indices were constructed based on the band-optimization algorithm. Eventually, an integrated index, namely, the multiband spectral index (MBSI) and moisture index (MI), is proposed to estimate the LWC in spring wheat around Fu-Kang City, Xinjiang, China. The MBSIs for LWC were calculated from two types of spectral data: raw reflectance (RR) and the spectrum based on FOD. The LWC was estimated by combining machine learning (K-nearest neighbor, KNN; support vector machine, SVM; and artificial neural network, ANN). The results showed that the fractional derivative pretreatment of spectral data enhances the implied information of the spectrum (the maximum correlation coefficient appeared using a 0.8-order differential) and increases the number of sensitive bands, especially in the near-infrared bands (700-1100 nm). The correlations between LWC and the two-band index (RVI1156, 1628 nm), three-band indices (3BI-3(766, 478, 1042 nm), 3BI-4(1129, 1175, 471 nm), 3BI-5(814, 929, 525 nm), 3BI-6(1156, 1214, 802 nm), 3BI-7(929, 851, 446 nm)) based on FOD were higher than that of moisture indices and single-band spectrum, with r of - 0.71**, 0.74**, 0.73**, - 0.72**, 0.75** and - 0.76** for the correlation. The prediction accuracy of the two-band spectral indices (DVI(698, 1274 nm) DVI(698, 1274 nm) DVI(698, 1274 nm)) was higher than that of the moisture spectral index, with R2 of 0.81 and R2 of 0.79 for the calibration and validation, respectively. Due to a large amount of spectral indices, the correlation coefficient method was used to select the characteristic spectral index from full three-band indices. Among twenty seven models, the FWBI-3BI- 0.8 order model performed the best predictive ability (with an R2 of 0.86, RMSE of 2.11%, and RPD of 2.65). These findings confirm that combining spectral index optimization with machine learning is a highly effective method for inverting the leaf water content in spring wheat.
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Affiliation(s)
- Zinhar Zununjan
- School of Resources and Environment, Yili Normal University, Yining, 835000, China
| | - Mardan Aghabey Turghan
- State Key Laboratory of Oasis and Desert Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China
| | - Mutallip Sattar
- College of Information Management, Xinjiang University of Finance and Economics, Urumqi, 830012, China
| | - Nijat Kasim
- School of Resources and Environment, Yili Normal University, Yining, 835000, China.
| | - Bilal Emin
- School of Resources and Environment, Yili Normal University, Yining, 835000, China
| | - Abdugheni Abliz
- College of Resources and Environmental Sciences, Xinjiang University, Urumqi, 830046, China
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Huang P, Yuan J, Yang P, Xiao F, Zhao Y. Nondestructive Detection of Sunflower Seed Vigor and Moisture Content Based on Hyperspectral Imaging and Chemometrics. Foods 2024; 13:1320. [PMID: 38731691 PMCID: PMC11083205 DOI: 10.3390/foods13091320] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2024] [Revised: 04/21/2024] [Accepted: 04/22/2024] [Indexed: 05/13/2024] Open
Abstract
Sunflower is an important crop, and the vitality and moisture content of sunflower seeds have an important influence on the sunflower's planting and yield. By employing hyperspectral technology, the spectral characteristics of sunflower seeds within the wavelength range of 384-1034 nm were carefully analyzed with the aim of achieving effective prediction of seed vitality and moisture content. Firstly, the original hyperspectral data were subjected to preprocessing techniques such as Savitzky-Golay smoothing, standard normal variable correction (SNV), and multiplicative scatter correction (MSC) to effectively reduce noise interference, ensuring the accuracy and reliability of the data. Subsequently, principal component analysis (PCA), extreme gradient boosting (XGBoost), and stacked autoencoders (SAE) were utilized to extract key feature bands, enhancing the interpretability and predictive performance of the data. During the modeling phase, random forests (RFs) and LightGBM algorithms were separately employed to construct classification models for seed vitality and prediction models for moisture content. The experimental results demonstrated that the SG-SAE-LightGBM model exhibited outstanding performance in the classification task of sunflower seed vitality, achieving an accuracy rate of 98.65%. Meanwhile, the SNV-XGBoost-LightGBM model showed remarkable achievement in moisture content prediction, with a coefficient of determination (R2) of 0.9715 and root mean square error (RMSE) of 0.8349. In conclusion, this study confirms that the fusion of hyperspectral technology and multivariate data analysis algorithms enables the accurate and rapid assessment of sunflower seed vitality and moisture content, providing robust tools and theoretical support for seed quality evaluation and agricultural production practices. Furthermore, this research not only expands the application of hyperspectral technology in unraveling the intrinsic vitality characteristics of sunflower seeds but also possesses significant theoretical and practical value.
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Affiliation(s)
| | | | | | | | - Yongpeng Zhao
- College of Mechanical and Electrical Engineering, Sichuan Agriculture University, Ya’an 625014, China; (P.H.); (J.Y.); (P.Y.); (F.X.)
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Wang Z, Ding J, Tan J, Liu J, Zhang T, Cai W, Meng S. UAV hyperspectral analysis of secondary salinization in arid oasis cotton fields: effects of FOD feature selection and SOA-RF. FRONTIERS IN PLANT SCIENCE 2024; 15:1358965. [PMID: 38439983 PMCID: PMC10909836 DOI: 10.3389/fpls.2024.1358965] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/20/2023] [Accepted: 02/06/2024] [Indexed: 03/06/2024]
Abstract
Secondary salinization is a crucial constraint on agricultural progress in arid regions. The specific mulching irrigation technique not only exacerbates secondary salinization but also complicates field-scale soil salinity monitoring. UAV hyperspectral remote sensing offers a monitoring method that is high-precision, high-efficiency, and short-cycle. In this study, UAV hyperspectral images were used to derive one-dimensional, textural, and three-dimensional feature variables using Competitive adaptive reweighted sampling (CARS), Gray-Level Co-occurrence Matrix (GLCM), Boruta Feature Selection (Boruta), and Brightness-Color-Index (BCI) with Fractional-order differentiation (FOD) processing. Additionally, three modeling strategies were developed (Strategy 1 involves constructing the model solely with the 20 single-band variable inputs screened by the CARS algorithm. In Strategy 2, 25 texture features augment Strategy 1, resulting in 45 feature variables for model construction. Strategy 3, building upon Strategy 2, incorporates six triple-band indices, totaling 51 variables used in the model's construction) and integrated with the Seagull Optimization Algorithm for Random Forest (SOA-RF) models to predict soil electrical conductivity (EC) and delineate spatial distribution. The results demonstrated that fractional order differentiation highlights spectral features in noisy spectra, and different orders of differentiation reveal different hidden information. The correlation between soil EC and spectra varies with the order. 1.9th order differentiation is proved to be the best order for constructing one-dimensional indices; although the addition of texture features slightly improves the accuracy of the model, the integration of the three-waveband indices significantly improves the accuracy of the estimation, with an R2 of 0.9476. In contrast to the conventional RF model, the SOA-RF algorithm optimizes its parameters thereby significantly improving the accuracy and model stability. The optimal soil salinity prediction model proposed in this study can accurately, non-invasively and rapidly identify excessive salt accumulation in drip irrigation under membrane. It is of great significance to improve the growing conditions of cotton, increase the cotton yield, and promote the sustainable development of Xinjiang's agricultural economy, and also provides a reference for the prevention and control of regional soil salinization.
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Affiliation(s)
- Zeyuan Wang
- College of Geography and Remote Sensing Sciences, Xinjiang University, Urumqi, China
- Xinjiang Key Laboratory of Oasis Ecology, Xinjiang University, Urumqi, China
- Key Laboratory of Smart City and Environment Modelling of Higher Education Institute, Xinjiang University, Urumqi, China
| | - Jianli Ding
- College of Geography and Remote Sensing Sciences, Xinjiang University, Urumqi, China
- Xinjiang Key Laboratory of Oasis Ecology, Xinjiang University, Urumqi, China
- Key Laboratory of Smart City and Environment Modelling of Higher Education Institute, Xinjiang University, Urumqi, China
| | - Jiao Tan
- College of Geography and Remote Sensing Sciences, Xinjiang University, Urumqi, China
- Xinjiang Key Laboratory of Oasis Ecology, Xinjiang University, Urumqi, China
- Key Laboratory of Smart City and Environment Modelling of Higher Education Institute, Xinjiang University, Urumqi, China
| | - Junhao Liu
- College of Geography and Remote Sensing Sciences, Xinjiang University, Urumqi, China
- Xinjiang Key Laboratory of Oasis Ecology, Xinjiang University, Urumqi, China
- Key Laboratory of Smart City and Environment Modelling of Higher Education Institute, Xinjiang University, Urumqi, China
| | - Tingting Zhang
- College of Geography and Remote Sensing Sciences, Xinjiang University, Urumqi, China
| | - Weijian Cai
- College of Geography and Remote Sensing Sciences, Xinjiang University, Urumqi, China
- Xinjiang Key Laboratory of Oasis Ecology, Xinjiang University, Urumqi, China
- Key Laboratory of Smart City and Environment Modelling of Higher Education Institute, Xinjiang University, Urumqi, China
| | - Shanshan Meng
- College of Geography and Remote Sensing Sciences, Xinjiang University, Urumqi, China
- Xinjiang Key Laboratory of Oasis Ecology, Xinjiang University, Urumqi, China
- Key Laboratory of Smart City and Environment Modelling of Higher Education Institute, Xinjiang University, Urumqi, China
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Tang T, Luo Q, Yang L, Gao C, Ling C, Wu W. Research Review on Quality Detection of Fresh Tea Leaves Based on Spectral Technology. Foods 2023; 13:25. [PMID: 38201054 PMCID: PMC10778318 DOI: 10.3390/foods13010025] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2023] [Revised: 12/13/2023] [Accepted: 12/18/2023] [Indexed: 01/12/2024] Open
Abstract
As the raw material for tea making, the quality of tea leaves directly affects the quality of finished tea. The quality of fresh tea leaves is mainly assessed by manual judgment or physical and chemical testing of the content of internal components. Physical and chemical methods are more mature, and the test results are more accurate and objective, but traditional chemical methods for measuring the biochemical indexes of tea leaves are time-consuming, labor-costly, complicated, and destructive. With the rapid development of imaging and spectroscopic technology, spectroscopic technology as an emerging technology has been widely used in rapid non-destructive testing of the quality and safety of agricultural products. Due to the existence of spectral information with a low signal-to-noise ratio, high information redundancy, and strong autocorrelation, scholars have conducted a series of studies on spectral data preprocessing. The correlation between spectral data and target data is improved by smoothing noise reduction, correction, extraction of feature bands, and so on, to construct a stable, highly accurate estimation or discrimination model with strong generalization ability. There have been more research papers published on spectroscopic techniques to detect the quality of tea fresh leaves. This study summarizes the principles, analytical methods, and applications of Hyperspectral imaging (HSI) in the nondestructive testing of the quality and safety of fresh tea leaves for the purpose of tracking the latest research advances at home and abroad. At the same time, the principles and applications of other spectroscopic techniques including Near-infrared spectroscopy (NIRS), Mid-infrared spectroscopy (MIRS), Raman spectroscopy (RS), and other spectroscopic techniques for non-destructive testing of quality and safety of fresh tea leaves are also briefly introduced. Finally, in terms of technical obstacles and practical applications, the challenges and development trends of spectral analysis technology in the nondestructive assessment of tea leaf quality are examined.
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Affiliation(s)
- Ting Tang
- College of Engineering, South China Agricultural University, Guangzhou 510642, China; (T.T.); (Q.L.); (L.Y.); (C.G.)
| | - Qing Luo
- College of Engineering, South China Agricultural University, Guangzhou 510642, China; (T.T.); (Q.L.); (L.Y.); (C.G.)
| | - Liu Yang
- College of Engineering, South China Agricultural University, Guangzhou 510642, China; (T.T.); (Q.L.); (L.Y.); (C.G.)
| | - Changlun Gao
- College of Engineering, South China Agricultural University, Guangzhou 510642, China; (T.T.); (Q.L.); (L.Y.); (C.G.)
| | - Caijin Ling
- Tea Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou 510640, China
| | - Weibin Wu
- College of Engineering, South China Agricultural University, Guangzhou 510642, China; (T.T.); (Q.L.); (L.Y.); (C.G.)
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Song Q, Gao X, Song Y, Li Q, Chen Z, Li R, Zhang H, Cai S. Estimation and mapping of soil texture content based on unmanned aerial vehicle hyperspectral imaging. Sci Rep 2023; 13:14097. [PMID: 37644047 PMCID: PMC10465580 DOI: 10.1038/s41598-023-40384-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2023] [Accepted: 08/09/2023] [Indexed: 08/31/2023] Open
Abstract
Soil texture is one of the important physical and natural properties of soil. Much of the current research focuses on soil texture monitoring using non-imaging geophysical spectrometers. However there are fewer studies utilizing unmanned aerial vehicle (UAV) hyperspectral data for soil texture monitoring. UAV mounted hyperspectral cameras can be used for quickly and accurately obtaining high-resolution spatial information of soil texture. A foundation has been laid for the realization of rapid soil texture surveys using unmanned airborne hyperspectral data without field sampling. This study selected three typical farmland areas in Huangshui Basin of Qinghai as the study area, and a total of 296 soil samples were collected. Data calibration of UAV spectra using laboratory spectra and field in situ spectra to explore the feasibility of applying laboratory soil texture models directly to field conditions. This results show that UAV hyperspectral imagery combined with machine learning can obtain a set of ideal processing methods. The pre-processing of the spectral data can obtain high accuracy of soil texture estimation and good mapping effect. The results of this study can provide effective technical support and decision-making assistance for future agricultural land planning on the Tibetan Plateau. The main innovation of this study is to establish a set of processing procedures and methods applicable to UAV hyperspectral imagery to provide data reference for monitoring soil texture in agricultural fields on the Tibetan Plateau.
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Affiliation(s)
- Qi Song
- School of Geographical Sciences, Qinghai Normal University, Xining, 810008, China
- Qinghai Province Key Laboratory of Physical Geography and Environmental Process, Xining, 810008, China
- Ministry of Education Key Laboratory of Tibetan Plateau Land Surface Processes and Ecological Ministry of Education Key Laboratory of Tibetan Plateau Land Surface Processes and Ecological Conservation, Xining, 810008, China
| | - Xiaohong Gao
- School of Geographical Sciences, Qinghai Normal University, Xining, 810008, China.
- Qinghai Province Key Laboratory of Physical Geography and Environmental Process, Xining, 810008, China.
- Ministry of Education Key Laboratory of Tibetan Plateau Land Surface Processes and Ecological Ministry of Education Key Laboratory of Tibetan Plateau Land Surface Processes and Ecological Conservation, Xining, 810008, China.
- Academy of Plateau Science and Sustainability, Xining, 810008, China.
| | - Yuting Song
- School of Geographical Sciences, Qinghai Normal University, Xining, 810008, China
- Qinghai Province Key Laboratory of Physical Geography and Environmental Process, Xining, 810008, China
- Ministry of Education Key Laboratory of Tibetan Plateau Land Surface Processes and Ecological Ministry of Education Key Laboratory of Tibetan Plateau Land Surface Processes and Ecological Conservation, Xining, 810008, China
| | - Qiaoli Li
- School of Geographical Sciences, Qinghai Normal University, Xining, 810008, China
- Qinghai Province Key Laboratory of Physical Geography and Environmental Process, Xining, 810008, China
- Ministry of Education Key Laboratory of Tibetan Plateau Land Surface Processes and Ecological Ministry of Education Key Laboratory of Tibetan Plateau Land Surface Processes and Ecological Conservation, Xining, 810008, China
| | - Zhen Chen
- School of Geographical Sciences, Qinghai Normal University, Xining, 810008, China
- Qinghai Province Key Laboratory of Physical Geography and Environmental Process, Xining, 810008, China
- Ministry of Education Key Laboratory of Tibetan Plateau Land Surface Processes and Ecological Ministry of Education Key Laboratory of Tibetan Plateau Land Surface Processes and Ecological Conservation, Xining, 810008, China
| | - Runxiang Li
- School of Geographical Sciences, Qinghai Normal University, Xining, 810008, China
- Qinghai Province Key Laboratory of Physical Geography and Environmental Process, Xining, 810008, China
- Ministry of Education Key Laboratory of Tibetan Plateau Land Surface Processes and Ecological Ministry of Education Key Laboratory of Tibetan Plateau Land Surface Processes and Ecological Conservation, Xining, 810008, China
| | - Hao Zhang
- School of Geographical Sciences, Qinghai Normal University, Xining, 810008, China
- Qinghai Province Key Laboratory of Physical Geography and Environmental Process, Xining, 810008, China
- Ministry of Education Key Laboratory of Tibetan Plateau Land Surface Processes and Ecological Ministry of Education Key Laboratory of Tibetan Plateau Land Surface Processes and Ecological Conservation, Xining, 810008, China
| | - Sangjie Cai
- School of Geographical Sciences, Qinghai Normal University, Xining, 810008, China
- Qinghai Province Key Laboratory of Physical Geography and Environmental Process, Xining, 810008, China
- Ministry of Education Key Laboratory of Tibetan Plateau Land Surface Processes and Ecological Ministry of Education Key Laboratory of Tibetan Plateau Land Surface Processes and Ecological Conservation, Xining, 810008, China
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Liao WC, Mukundan A, Sadiaza C, Tsao YM, Huang CW, Wang HC. Systematic meta-analysis of computer-aided detection to detect early esophageal cancer using hyperspectral imaging. BIOMEDICAL OPTICS EXPRESS 2023; 14:4383-4405. [PMID: 37799695 PMCID: PMC10549751 DOI: 10.1364/boe.492635] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/07/2023] [Revised: 07/05/2023] [Accepted: 07/06/2023] [Indexed: 10/07/2023]
Abstract
One of the leading causes of cancer deaths is esophageal cancer (EC) because identifying it in early stage is challenging. Computer-aided diagnosis (CAD) could detect the early stages of EC have been developed in recent years. Therefore, in this study, complete meta-analysis of selected studies that only uses hyperspectral imaging to detect EC is evaluated in terms of their diagnostic test accuracy (DTA). Eight studies are chosen based on the Quadas-2 tool results for systematic DTA analysis, and each of the methods developed in these studies is classified based on the nationality of the data, artificial intelligence, the type of image, the type of cancer detected, and the year of publishing. Deeks' funnel plot, forest plot, and accuracy charts were made. The methods studied in these articles show the automatic diagnosis of EC has a high accuracy, but external validation, which is a prerequisite for real-time clinical applications, is lacking.
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Affiliation(s)
- Wei-Chih Liao
- Department of Internal Medicine, National Taiwan University Hospital, National Taiwan University College of Medicine, Taipei, Taiwan
- Graduate Institute of Epidemiology and Preventive Medicine, National Taiwan University, Taipei, Taiwan
| | - Arvind Mukundan
- Department of Mechanical Engineering, National Chung Cheng University, 168, University Rd., Min Hsiung, Chia Yi 62102, Taiwan
| | - Cleorita Sadiaza
- Department of Mechanical Engineering, Far Eastern University, P. Paredes St., Sampaloc, Manila, 1015, Philippines
| | - Yu-Ming Tsao
- Department of Mechanical Engineering, National Chung Cheng University, 168, University Rd., Min Hsiung, Chia Yi 62102, Taiwan
| | - Chien-Wei Huang
- Department of Gastroenterology, Kaohsiung Armed Forces General Hospital, 2, Zhongzheng 1st.Rd., Lingya District, Kaohsiung City 80284, Taiwan
- Department of Nursing, Tajen University, 20, Weixin Rd., Yanpu Township, Pingtung County 90741, Taiwan
| | - Hsiang-Chen Wang
- Department of Mechanical Engineering, National Chung Cheng University, 168, University Rd., Min Hsiung, Chia Yi 62102, Taiwan
- Department of Medical Research, Dalin Tzu Chi Hospital, Buddhist Tzu Chi Medical Foundation, No. 2, Minsheng Road, Dalin, Chiayi, 62247, Taiwan
- Director of Technology Development, Hitspectra Intelligent Technology Co., Ltd., 4F., No. 2, Fuxing 4th Rd., Qianzhen Dist., Kaohsiung City 80661, Taiwan
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Ding Y, Yi Z, Fang Y, He K, Huang Y, Zhu H, Du A, Tan L, Zhao H, Jin Y. Improving the quality of barren rocky soil by culturing sweetpotato, with special reference to plant-microbes-soil interactions. Microbiol Res 2023; 268:127294. [PMID: 36592577 DOI: 10.1016/j.micres.2022.127294] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2022] [Revised: 10/19/2022] [Accepted: 12/19/2022] [Indexed: 12/24/2022]
Abstract
Biological process is an effective strategy to improve soil quality in agroecosystems. Sweetpotato has long been cultivated in barren rocky soil (BRS) to improve soil fertility and obtain considerably high yield. However, how sweetpotato cultivation affects soil quality is still unclear. We cultured sweetpotato in virgin BRS, and investigated its transcriptome, rhizospheric microbial community and soil properties. A high sweetpotato yield (22.69 t.ha-1) was obtained through upregulating the expression of genes associated with stress resistance, nitrogen/phosphorus/potassium (N/P/K) uptake, and root exudates transport. Meanwhile, the rhizospheric microbial diversity in BRS increased, and the rhizospheric microbial community structure became more similar to that of fertile soil, which might benefit from the increased root exudates. Notably, the relative abundances of N-fixing and P/K-solubilizing microbes increased, and the copy number of nifH increased 6.67 times. Moreover, the activities of acid, neutral, and alkaline phosphatases increased strongly from 0.63, 0.02, and 1.15-1.58, 0.31, and 2.11 mg phenol·g-1·d-1, respectively, and total carbon, dissolved organic carbon, available N/P content also increased, while bulk density and pH of BRS decreased, indicating the enhanced soil fertility. Our study found sweetpotato cultivation improved BRS quality through shaping microbial communities, which has important guiding significance for sustainable agriculture.
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Affiliation(s)
- Yanqiang Ding
- Key Laboratory of Environmental and Applied Microbiology, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China; Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu 610041, China
| | - Zhuolin Yi
- Key Laboratory of Environmental and Applied Microbiology, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China; Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu 610041, China
| | - Yang Fang
- Key Laboratory of Environmental and Applied Microbiology, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China; Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu 610041, China
| | - Kaize He
- Key Laboratory of Environmental and Applied Microbiology, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China; Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu 610041, China
| | - Yingdong Huang
- Sweetpotato Institute, Nanchong Academy of Agricultural Sciences, Nanchong 637001, China
| | - Hongqing Zhu
- Sweetpotato Institute, Nanchong Academy of Agricultural Sciences, Nanchong 637001, China
| | - Anping Du
- Key Laboratory of Environmental and Applied Microbiology, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China; Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu 610041, China
| | - Li Tan
- Key Laboratory of Environmental and Applied Microbiology, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China; Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu 610041, China
| | - Hai Zhao
- Key Laboratory of Environmental and Applied Microbiology, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China; Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu 610041, China
| | - Yanling Jin
- Key Laboratory of Environmental and Applied Microbiology, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China; Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu 610041, China.
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AI meets UAVs: A survey on AI empowered UAV perception systems for precision agriculture. Neurocomputing 2023. [DOI: 10.1016/j.neucom.2022.11.020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
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Raubitzek S, Mallinger K, Neubauer T. Combining Fractional Derivatives and Machine Learning: A Review. ENTROPY (BASEL, SWITZERLAND) 2022; 25:35. [PMID: 36673176 PMCID: PMC9858603 DOI: 10.3390/e25010035] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/07/2022] [Revised: 12/20/2022] [Accepted: 12/21/2022] [Indexed: 06/17/2023]
Abstract
Fractional calculus has gained a lot of attention in the last couple of years. Researchers have discovered that processes in various fields follow fractional dynamics rather than ordinary integer-ordered dynamics, meaning that the corresponding differential equations feature non-integer valued derivatives. There are several arguments for why this is the case, one of which is that fractional derivatives inherit spatiotemporal memory and/or the ability to express complex naturally occurring phenomena. Another popular topic nowadays is machine learning, i.e., learning behavior and patterns from historical data. In our ever-changing world with ever-increasing amounts of data, machine learning is a powerful tool for data analysis, problem-solving, modeling, and prediction. It has provided many further insights and discoveries in various scientific disciplines. As these two modern-day topics hold a lot of potential for combined approaches in terms of describing complex dynamics, this article review combines approaches from fractional derivatives and machine learning from the past, puts them into context, and thus provides a list of possible combined approaches and the corresponding techniques. Note, however, that this article does not deal with neural networks, as there is already extensive literature on neural networks and fractional calculus. We sorted past combined approaches from the literature into three categories, i.e., preprocessing, machine learning and fractional dynamics, and optimization. The contributions of fractional derivatives to machine learning are manifold as they provide powerful preprocessing and feature augmentation techniques, can improve physically informed machine learning, and are capable of improving hyperparameter optimization. Thus, this article serves to motivate researchers dealing with data-based problems, to be specific machine learning practitioners, to adopt new tools, and enhance their existing approaches.
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Affiliation(s)
- Sebastian Raubitzek
- Data Science Research Unit, TU Wien, Favoritenstrasse 9-11/194, 1040 Vienna, Austria
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Cao X, Chen W, Ge X, Chen X, Wang J, Ding J. Multidimensional soil salinity data mining and evaluation from different satellites. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 846:157416. [PMID: 35850342 DOI: 10.1016/j.scitotenv.2022.157416] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/27/2022] [Revised: 06/28/2022] [Accepted: 07/12/2022] [Indexed: 06/15/2023]
Abstract
Soil salinization, a common land degradation mode, restricts the ecological environment and is a global issue due to climate change. Accurately, quickly and effectively monitoring soil salinity is critical for governmental institutions that develop hazard prevention and mitigation strategies. Remote sensing (RS) technology provides a viable alternative to traditional field work due to its large area coverage, abundant spectral information and nearly constant observations. Key issues in RS-based soil salinity monitoring include the lack of both data-mining techniques for obtaining spectral band information and comprehensive considerations of synergies among different spectra. The main objective of this study was to provide in-depth explorations of data mining and integration algorithms from different satellites to multidimensionally evaluate soil salinity models. The Ebinur Lake Wetland Reserve (Xinjiang Province, China) was selected as a case study. First, ground-measured visible and near infrared (VIS-NIR) spectral data were combined with the RS band to simulate Landsat 8 (L8) and Sentinel 2 (S2) and 3 (S3) data. Second, one-dimensional RS bands and 15 soil salinity and vegetation indices were selected, and 15 spectral data transformations (reciprocal, differential, absorbance, etc.) were obtained. Two- and three-dimensional spectral indices were constructed, and the response relationships between different spectral indices and soil electrical conductivity (EC) were comprehensively explored. Finally, an integrated multidimensional algorithm was used to estimate soil salinity in high-performance models for the three satellites. The results showed that all data-mining-based model combinations performed well for all satellites (R2 > 0.80). However, with multidimensional model combinations, S3 presented the highest predictive capability (R2 = 0.89, RMSE = 2.57 mS·cm-1, RPD = 2.05), followed by S2 (R2 = 0.86, RMSE = 2.71 mS·cm-1, RPD = 1.90) and L8 (R2 = 0.85, RMSE = 2.84 mS·cm-1, RPD = 1.87). Therefore, data mining with integration algorithms in model combinations performs significantly better than previous models and could be considered a promising method for obtaining improved results from soil salinity susceptibility models in similar cases.
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Affiliation(s)
- Xiaoyi Cao
- College of Geography and Remote sensing Science & Xinjiang Key Laboratory of Oasis Ecology & Key Laboratory of Smart City and Environment Modelling of Higher Education Institute, Xinjiang University, Urumqi 830017, China; Key Laboratory for Semi-Arid Climate Change of the Ministry of Education, College of Atmospheric Sciences, Lanzhou University, Lanzhou 730000, China
| | - Wenqian Chen
- School of Information and Control Engineering, Qingdao University of Technology, Qingdao 266520, China
| | - Xiangyu Ge
- College of Geography and Remote sensing Science & Xinjiang Key Laboratory of Oasis Ecology & Key Laboratory of Smart City and Environment Modelling of Higher Education Institute, Xinjiang University, Urumqi 830017, China
| | - Xiangyue Chen
- Key Laboratory for Semi-Arid Climate Change of the Ministry of Education, College of Atmospheric Sciences, Lanzhou University, Lanzhou 730000, China
| | - Jingzhe Wang
- School of Artificial Intelligence, Shenzhen Polytechnic, Shenzhen 518055, China; State Key Laboratory of Resources and Environmental Information System, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing 100101, China
| | - Jianli Ding
- College of Geography and Remote sensing Science & Xinjiang Key Laboratory of Oasis Ecology & Key Laboratory of Smart City and Environment Modelling of Higher Education Institute, Xinjiang University, Urumqi 830017, China.
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Datta D, Paul M, Murshed M, Teng SW, Schmidtke L. Soil Moisture, Organic Carbon, and Nitrogen Content Prediction with Hyperspectral Data Using Regression Models. SENSORS (BASEL, SWITZERLAND) 2022; 22:7998. [PMID: 36298349 PMCID: PMC9609775 DOI: 10.3390/s22207998] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/30/2022] [Revised: 10/14/2022] [Accepted: 10/17/2022] [Indexed: 06/16/2023]
Abstract
Soil moisture, soil organic carbon, and nitrogen content prediction are considered significant fields of study as they are directly related to plant health and food production. Direct estimation of these soil properties with traditional methods, for example, the oven-drying technique and chemical analysis, is a time and resource-consuming approach and can predict only smaller areas. With the significant development of remote sensing and hyperspectral (HS) imaging technologies, soil moisture, carbon, and nitrogen can be estimated over vast areas. This paper presents a generalized approach to predicting three different essential soil contents using a comprehensive study of various machine learning (ML) models by considering the dimensional reduction in feature spaces. In this study, we have used three popular benchmark HS datasets captured in Germany and Sweden. The efficacy of different ML algorithms is evaluated to predict soil content, and significant improvement is obtained when a specific range of bands is selected. The performance of ML models is further improved by applying principal component analysis (PCA), a dimensional reduction method that works with an unsupervised learning method. The effect of soil temperature on soil moisture prediction is evaluated in this study, and the results show that when the soil temperature is considered with the HS band, the soil moisture prediction accuracy does not improve. However, the combined effect of band selection and feature transformation using PCA significantly enhances the prediction accuracy for soil moisture, carbon, and nitrogen content. This study represents a comprehensive analysis of a wide range of established ML regression models using data preprocessing, effective band selection, and data dimension reduction and attempt to understand which feature combinations provide the best accuracy. The outcomes of several ML models are verified with validation techniques and the best- and worst-case scenarios in terms of soil content are noted. The proposed approach outperforms existing estimation techniques.
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Affiliation(s)
- Dristi Datta
- School of Computing, Mathematics, and Engineering, Charles Sturt University, Bathurst, NSW 2795, Australia
| | - Manoranjan Paul
- School of Computing, Mathematics, and Engineering, Charles Sturt University, Bathurst, NSW 2795, Australia
| | - Manzur Murshed
- Centre for Smart Analytics, Federation University Australia, Berwick, VIC 3806, Australia
| | - Shyh Wei Teng
- Institute of Innovation, Science and Sustainability, Federation University Australia, Berwick, VIC 3806, Australia
| | - Leigh Schmidtke
- Gulbali Institue, Charles Sturt University, Wagga Wagga, NSW 2650, Australia
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Zhu C, Ding J, Zhang Z, Wang Z. Exploring the potential of UAV hyperspectral image for estimating soil salinity: Effects of optimal band combination algorithm and random forest. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2022; 279:121416. [PMID: 35689848 DOI: 10.1016/j.saa.2022.121416] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2022] [Revised: 04/27/2022] [Accepted: 05/18/2022] [Indexed: 06/15/2023]
Abstract
Hyperspectral remote sensing by unmanned aerial vehicle (UAV) is an important technical tool for rapid, accurate, and real-time monitoring of soil salinity in arid zone agroecosystems. However, the key to effective soil salinity (electrical conductivity, EC) prediction by UAV visible and near-infrared (Vis-NIR) spectroscopy depends on the selection of effective features selection techniques and robust prediction characteristics algorithms. Therefore, in this study, two advanced feature selection methods and two commonly used modeling methods were applied to predict and characterize the spatial patterns of soil salinity (EC). The aim of this study was to explore the predictive performance of different feature band selection methods and to identify a robust soil salinity mapping strategy. The results demonstrated that standard normal variate (SNV) pre-processing broadened the absorption characteristics of the spectrum. Compared with competitive adaptive reweighted sampling (CARS), the optimal band combination algorithm (OBCA) strengthened the correlation with soil salinity and had a higher variable importance in the modeling. Random forest (RF) was more stable in mapping the spatial pattern of surface soil salinity compared to the partial least squares regression model (PLSR). Our results confirm the effectiveness of OBCA and RF in the developing UAV remote sensing models for surface soil salinity estimation and mapping.
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Affiliation(s)
- Chuanmei Zhu
- College of Geography and Remote Sensing Sciences, Xinjiang University, Urumqi 830046, China; Xinjiang Key Laboratory of Oasis Ecology, Xinjiang University, Urumqi 830046, China; Key Laboratory of Smart City and Environment Modelling of Higher Education Institute, Urumqi 830046, China
| | - Jianli Ding
- College of Geography and Remote Sensing Sciences, Xinjiang University, Urumqi 830046, China; Xinjiang Key Laboratory of Oasis Ecology, Xinjiang University, Urumqi 830046, China; Key Laboratory of Smart City and Environment Modelling of Higher Education Institute, Urumqi 830046, China.
| | - Zipeng Zhang
- College of Geography and Remote Sensing Sciences, Xinjiang University, Urumqi 830046, China; Xinjiang Key Laboratory of Oasis Ecology, Xinjiang University, Urumqi 830046, China; Key Laboratory of Smart City and Environment Modelling of Higher Education Institute, Urumqi 830046, China
| | - Zheng Wang
- College of Geography and Remote Sensing Sciences, Xinjiang University, Urumqi 830046, China; Xinjiang Key Laboratory of Oasis Ecology, Xinjiang University, Urumqi 830046, China; Key Laboratory of Smart City and Environment Modelling of Higher Education Institute, Urumqi 830046, China
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Sousa JJ, Toscano P, Matese A, Di Gennaro SF, Berton A, Gatti M, Poni S, Pádua L, Hruška J, Morais R, Peres E. UAV-Based Hyperspectral Monitoring Using Push-Broom and Snapshot Sensors: A Multisite Assessment for Precision Viticulture Applications. SENSORS (BASEL, SWITZERLAND) 2022; 22:6574. [PMID: 36081033 PMCID: PMC9460142 DOI: 10.3390/s22176574] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/25/2022] [Revised: 08/24/2022] [Accepted: 08/25/2022] [Indexed: 06/15/2023]
Abstract
Hyperspectral aerial imagery is becoming increasingly available due to both technology evolution and a somewhat affordable price tag. However, selecting a proper UAV + hyperspectral sensor combo to use in specific contexts is still challenging and lacks proper documental support. While selecting an UAV is more straightforward as it mostly relates with sensor compatibility, autonomy, reliability and cost, a hyperspectral sensor has much more to be considered. This note provides an assessment of two hyperspectral sensors (push-broom and snapshot) regarding practicality and suitability, within a precision viticulture context. The aim is to provide researchers, agronomists, winegrowers and UAV pilots with dependable data collection protocols and methods, enabling them to achieve faster processing techniques and helping to integrate multiple data sources. Furthermore, both the benefits and drawbacks of using each technology within a precision viticulture context are also highlighted. Hyperspectral sensors, UAVs, flight operations, and the processing methodology for each imaging type' datasets are presented through a qualitative and quantitative analysis. For this purpose, four vineyards in two countries were selected as case studies. This supports the extrapolation of both advantages and issues related with the two types of hyperspectral sensors used, in different contexts. Sensors' performance was compared through the evaluation of field operations complexity, processing time and qualitative accuracy of the results, namely the quality of the generated hyperspectral mosaics. The results shown an overall excellent geometrical quality, with no distortions or overlapping faults for both technologies, using the proposed mosaicking process and reconstruction. By resorting to the multi-site assessment, the qualitative and quantitative exchange of information throughout the UAV hyperspectral community is facilitated. In addition, all the major benefits and drawbacks of each hyperspectral sensor regarding its operation and data features are identified. Lastly, the operational complexity in the context of precision agriculture is also presented.
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Affiliation(s)
- Joaquim J. Sousa
- Engineering Department, School of Science and Technology, University of Trás-os-Montes e Alto Douro, 5000-801 Vila Real, Portugal
- Centre for Robotics in Industry and Intelligent Systems (CRIIS), INESC Technology and Science (INESCTEC), 4200-465 Porto, Portugal
| | - Piero Toscano
- Institute of BioEconomy, National Research Council (CNR-IBE), Via G. Caproni, 8, 50145 Florence, Italy
| | - Alessandro Matese
- Institute of BioEconomy, National Research Council (CNR-IBE), Via G. Caproni, 8, 50145 Florence, Italy
| | | | - Andrea Berton
- Institute of Geosciences and Earth Resources, National Research Council (CNR-IGG), Via Moruzzi 1, 56124 Pisa, Italy
| | - Matteo Gatti
- Department of Sustainable Crop Production (DI.PRO.VE.S.), Università Cattolica del Sacro Cuore, Via E. Parmense 84, 29122 Piacenza, Italy
| | - Stefano Poni
- Department of Sustainable Crop Production (DI.PRO.VE.S.), Università Cattolica del Sacro Cuore, Via E. Parmense 84, 29122 Piacenza, Italy
| | - Luís Pádua
- Centre for the Research and Technology of Agro-Environmental and Biological Sciences, University of Trás-os-Montes e Alto Douro, 5000-801 Vila Real, Portugal
| | - Jonáš Hruška
- Engineering Department, School of Science and Technology, University of Trás-os-Montes e Alto Douro, 5000-801 Vila Real, Portugal
| | - Raul Morais
- Engineering Department, School of Science and Technology, University of Trás-os-Montes e Alto Douro, 5000-801 Vila Real, Portugal
- Centre for the Research and Technology of Agro-Environmental and Biological Sciences, University of Trás-os-Montes e Alto Douro, 5000-801 Vila Real, Portugal
| | - Emanuel Peres
- Engineering Department, School of Science and Technology, University of Trás-os-Montes e Alto Douro, 5000-801 Vila Real, Portugal
- Centre for the Research and Technology of Agro-Environmental and Biological Sciences, University of Trás-os-Montes e Alto Douro, 5000-801 Vila Real, Portugal
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14
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Cui S, Zhou K, Ding R, Cheng Y, Jiang G. Estimation of soil copper content based on fractional-order derivative spectroscopy and spectral characteristic band selection. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2022; 275:121190. [PMID: 35364408 DOI: 10.1016/j.saa.2022.121190] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/17/2022] [Revised: 03/21/2022] [Accepted: 03/22/2022] [Indexed: 06/14/2023]
Abstract
Hyperspectral remote sensing is a rapid and nondestructive method to estimate the soil copper content. However, before establishing the spectral estimation model, it is crucial to preprocess the hyperspectral data to eliminate noise and highlight the spectral response characteristics of copper. The two commonly used spectral preprocessing approaches, i.e., the first- and second-order derivatives, may not provide sufficient information on the copper in the soil spectra. Therefore, this study investigates the potential of using the fractional-order derivative (FOD) of the spectra (FOD spectra) for estimating the soil copper content. A total of 170 soil samples were collected, and the soil reflectance spectra were measured outdoors using an ASD FieldSpec3 portable spectrometer. The soil copper content was obtained by chemical analysis in the laboratory. A quantitative estimation model of the soil copper content was established by combining the FOD spectra with different orders and using the partial least squares (PLS) method. The results revealed that the accuracy and prediction ability of the models using different orders of the FOD spectra varied significantly. The model using the 0.8-order FOD spectra performed the best, and the coefficient of determination (R2) and the ratio of the performance to deviation (RPD) of the validation set were 0.6416 and 1.63, respectively. The performance of the model using three characteristic bands (2365.5 nm and 2375.5 nm of the 0.9-order derivatives and 864.5 nm of the 1.1-order derivatives) provided significantly better performance than utilizing all wavelength bands from 400 to 2400 nm. This model provided the optimum predictive ability (R2: 0.6552 vs. 0.6416, RPD: 1.65 vs. 1.63) and was straightforward, requiring only three bands. These results show that it is feasible and practical to establish an accurate and rapid estimation model of the soil copper content using FOD spectra.
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Affiliation(s)
- Shichao Cui
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi 830011, China; Xinjiang Key Laboratory of Mineral Resources and Digital Geology, Urumqi 830011, China; Xinjiang Research Centre for Mineral Resources, Chinese Academy of Sciences, Urumqi 830011, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Kefa Zhou
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi 830011, China; Xinjiang Key Laboratory of Mineral Resources and Digital Geology, Urumqi 830011, China; Xinjiang Research Centre for Mineral Resources, Chinese Academy of Sciences, Urumqi 830011, China; University of Chinese Academy of Sciences, Beijing 100049, China.
| | - Rufu Ding
- China Non-Ferrous Metals Resources Geological Survey, Beijing 100012, China
| | - Yinyi Cheng
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi 830011, China; Xinjiang Key Laboratory of Mineral Resources and Digital Geology, Urumqi 830011, China; Xinjiang Research Centre for Mineral Resources, Chinese Academy of Sciences, Urumqi 830011, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Guo Jiang
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi 830011, China; Xinjiang Key Laboratory of Mineral Resources and Digital Geology, Urumqi 830011, China; Xinjiang Research Centre for Mineral Resources, Chinese Academy of Sciences, Urumqi 830011, China; University of Chinese Academy of Sciences, Beijing 100049, China
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15
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Ruszczak B, Boguszewska-Mańkowska D. Soil Moisture a Posteriori Measurements Enhancement Using Ensemble Learning. SENSORS (BASEL, SWITZERLAND) 2022; 22:s22124591. [PMID: 35746371 PMCID: PMC9228865 DOI: 10.3390/s22124591] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2022] [Revised: 06/05/2022] [Accepted: 06/15/2022] [Indexed: 05/26/2023]
Abstract
This work aimed to assess the recalibration and accurate characterization of commonly used smart soil-moisture sensors using computational methods. The paper describes an ensemble learning algorithm that boosts the performance of potato root moisture estimation and increases the simple moisture sensors' performance. It was prepared using several month-long everyday actual outdoor data and validated on the separated part of that dataset. To obtain conclusive results, two different potato varieties were grown on 24 separate plots on two distinct soil profiles and, besides natural precipitation, several different watering strategies were applied, and the experiment was monitored during the whole season. The acquisitions on every plot were performed using simple moisture sensors and were supplemented with reference manual gravimetric measurements and meteorological data. Next, a group of machine learning algorithms was tested to extract the information from this measurements dataset. The study showed the possibility of decreasing the median moisture estimation error from 2.035% for the baseline model to 0.808%, which was achieved using the Extra Trees algorithm.
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Affiliation(s)
- Bogdan Ruszczak
- Department of Computer Science, Opole University of Technology, 45-758 Opole, Poland
| | - Dominika Boguszewska-Mańkowska
- Potato Agronomy Department, Plant Breeding and Acclimatization Institute—National Research Institute, 05-870 Radzików, Poland;
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Matese A, Di Gennaro SF, Orlandi G, Gatti M, Poni S. Assessing Grapevine Biophysical Parameters From Unmanned Aerial Vehicles Hyperspectral Imagery. FRONTIERS IN PLANT SCIENCE 2022; 13:898722. [PMID: 35769294 PMCID: PMC9235871 DOI: 10.3389/fpls.2022.898722] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/17/2022] [Accepted: 05/12/2022] [Indexed: 05/04/2023]
Abstract
Over the last 50 years, many approaches for extracting plant key parameters from remotely sensed data have been developed, especially in the last decade with the spread of unmanned aerial vehicles (UAVs) in agriculture. Multispectral sensors are very useful for the elaboration of common vegetation indices (VIs), however, the spectral accuracy and range may not be enough. In this scenario, hyperspectral (HS) technologies are gaining particular attention thanks to the highest spectral resolution, which allows deep characterization of vegetative/soil response. Literature presents few papers encompassing UAV-based HS applications in vineyard, a challenging conditions respect to other crops due to high presence of bare soil, grass cover, shadows and high heterogeneity canopy structure with different leaf inclination. The purpose of this paper is to present the first contribution combining traditional and multivariate HS data elaboration techniques, supported by strong ground truthing of vine ecophysiological, vegetative and productive variables. Firstly the research describes the UAV image acquisition and processing workflow to generate a 50 bands HS orthomosaic of a study vineyard. Subsequently, the spectral data extracted from 60 sample vines were elaborated both investigating the relationship between traditional narrowband VIs and grapevine traits. Then, multivariate calibration models were built using a double approach based on Partial Least Square (PLS) regression and interval-PLS (iPLS), to evaluate the correlation performance between the biophysical parameters and HS imagery using the whole spectral range and a selection of more relevant bands applying a variable selection algorithm, respectively. All techniques (VIs, PLS and iPLS) provided satisfactory correlation performances for the ecophysiological (R 2 = 0.65), productive (R 2 = 0.48), and qualitative (R 2 = 0.63) grape parameters. The novelty of this work is represented by the first assessment of a UAV HS dataset with the expression of the entire vine ecosystem, from the physiological and vegetative state to grapes production and quality, using narrowband VIs and multivariate PLS regressions. A correct non-destructive estimation of key parameters in vineyard, above all physiological parameters which must be measured in a short time as they are extremely influenced by the variability of environmental conditions during the day, represents a powerful tool to support the winegrower in vineyard management.
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Affiliation(s)
- Alessandro Matese
- Institute of BioEconomy, National Research Council (CNR-IBE), Firenze, Italy
| | | | - Giorgia Orlandi
- Institute of BioEconomy, National Research Council (CNR-IBE), Firenze, Italy
| | - Matteo Gatti
- Department of Sustainable Crop Production (DI.PRO.VE.S.), Università Cattolica del Sacro Cuore, Piacenza, Italy
| | - Stefano Poni
- Department of Sustainable Crop Production (DI.PRO.VE.S.), Università Cattolica del Sacro Cuore, Piacenza, Italy
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Döpper V, Rocha AD, Berger K, Gränzig T, Verrelst J, Kleinschmit B, Förster M. Estimating soil moisture content under grassland with hyperspectral data using radiative transfer modelling and machine learning. INTERNATIONAL JOURNAL OF APPLIED EARTH OBSERVATION AND GEOINFORMATION : ITC JOURNAL 2022; 110:102817. [PMID: 36093264 PMCID: PMC7613374 DOI: 10.1016/j.jag.2022.102817] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
The monitoring of soil moisture content (SMC) at very high spatial resolution (<10m) using unmanned aerial systems (UAS) is of high interest for precision agriculture and the validation of large scale SMC products. Data-driven approaches are the most common method to retrieve SMC with UAS-borne data at water limited sites over non-disturbed agricultural crops. A major disadvantage of data-driven algorithms is the limited transferability in space and time and the need of a high number of ground reference samples. Physically-based approaches are less dependent on the amount of samples and are transferable in space and time. This study explores the potential of (1) a hybrid method targeting the soil brightness factor of the PROSAIL model using a variational heteroscedastic Gaussian Processes regression (VHGPR) algorithm, and (2) a data-driven method employing VHGPR for the retrieval of SMC over three grassland sites based on UAS-borne VIS-NIR (399-1001 nm) hyperspectral data. The sites were managed by mowing (Fendt), grazing (Grosses Bruch) and irrigation (Marquardt). With these distinct local pre-conditions we aimed to identify factors that favor and limit the retrieval of SMC. The hybrid approach presented encouraging results in Marquardt (RMSE = 1.5 Vol_%, R2 = 0.2). At the permanent grassland sites (Fendt, Grosses Bruch) the thatch layer jeopardized the application of the hybrid model. We identified the complex canopy structure of grassland as the main factor impacting the hybrid SMC retrieval. The data-driven approach showed high accuracy for Fendt (R2 = 0.84, RMSE = 8.66) and Marquardt (R2 = 0.4, RMSE = 10.52). All data-driven models build on the LAI-SMC relationship. However, this relationship was hampered by mowing (Fendt), leading to a lack of transferability in time. The alteration of plant traits by grazing prevents finding a relationship with SMC in Grosses Bruch. In Marquardt, we identified the timelag between changes in SMC and plant response as the main reason of decrease in model accuracy. Yet, the model performance is accurate in undisturbed and water-limited areas (Marquardt). The analysis points to challenges that need to be tackled in future research and opens the discussion for the development of robust models to retrieve high resolution SMC from UAS-borne remote sensing observations.
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Affiliation(s)
- Veronika Döpper
- Geoinformation in Environmental Planning Lab, Technische Universität Berlin (TUB), Berlin, Germany
| | - Alby Duarte Rocha
- Geoinformation in Environmental Planning Lab, Technische Universität Berlin (TUB), Berlin, Germany
| | - Katja Berger
- Department of Geography, Ludwig-Maximilians-Universität München (LMU), Munich, Munich, Germany
- Image Processing Laboratory (IPL), Universitat de València, València, Spain
| | - Tobias Gränzig
- Geoinformation in Environmental Planning Lab, Technische Universität Berlin (TUB), Berlin, Germany
| | - Jochem Verrelst
- Image Processing Laboratory (IPL), Universitat de València, València, Spain
| | - Birgit Kleinschmit
- Geoinformation in Environmental Planning Lab, Technische Universität Berlin (TUB), Berlin, Germany
| | - Michael Förster
- Geoinformation in Environmental Planning Lab, Technische Universität Berlin (TUB), Berlin, Germany
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Development of Prediction Models for Estimating Key Rice Growth Variables Using Visible and NIR Images from Unmanned Aerial Systems. REMOTE SENSING 2022. [DOI: 10.3390/rs14061384] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/04/2022]
Abstract
The rapid and accurate acquisition of rice growth variables using unmanned aerial system (UAS) is useful for assessing rice growth and variable fertilization in precision agriculture. In this study, rice plant height (PH), leaf area index (LAI), aboveground biomass (AGB), and nitrogen nutrient index (NNI) were obtained for different growth periods in field experiments with different nitrogen (N) treatments from 2019–2020. Known spectral indices derived from the visible and NIR images and key rice growth variables measured in the field at different growth periods were used to build a prediction model using the random forest (RF) algorithm. The results showed that the different N fertilizer applications resulted in significant differences in rice growth variables; the correlation coefficients of PH and LAI with visible-near infrared (V-NIR) images at different growth periods were larger than those with visible (V) images while the reverse was true for AGB and NNI. RF models for estimating key rice growth variables were established using V-NIR images and V images, and the results were validated with an R2 value greater than 0.8 for all growth stages. The accuracy of the RF model established from V images was slightly higher than that established from V-NIR images. The RF models were further tested using V images from 2019: R2 values of 0.75, 0.75, 0.72, and 0.68 and RMSE values of 11.68, 1.58, 3.74, and 0.13 were achieved for PH, LAI, AGB, and NNI, respectively, demonstrating that RGB UAS achieved the same performance as multispectral UAS for monitoring rice growth.
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Evaluation of Total Nitrogen in Water via Airborne Hyperspectral Data: Potential of Fractional Order Discretization Algorithm and Discrete Wavelet Transform Analysis. REMOTE SENSING 2021. [DOI: 10.3390/rs13224643] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Controlling and managing surface source pollution depends on the rapid monitoring of total nitrogen in water. However, the complex factors affecting water quality (plant shading and suspended matter in water) make direct estimation extremely challenging. Considering the spectral response mechanisms of emergent plants, we coupled discrete wavelet transform (DWT) and fractional order discretization (FOD) techniques with three machine learning models (random forest (RF), bagging algorithm (bagging), and eXtreme Gradient Boosting (XGBoost)) to mine this potential spectral information. A total of 567 models were developed, and airborne hyperspectral data processed with various DWT scales and FOD techniques were compared. The effective information in the hyperspectral reflectance data were better emphasized after DWT processing. After DWT processing the original spectrum (OR), its sensitivity to TN in water was maximally improved by 0.22, and the correlation between FOD and TN in water was optimally increased by 0.57. The transformed spectral information enhanced the TN model accuracy, especially for FOD after DWT. For RF, 82% of the model R2 values improved by 0.02~0.72 compared to the model using FOD spectra; 78.8% of the bagging values improved by 0.01~0.53 and 65.0% of the XGBoost values improved by 0.01~0.64. The XGBoost model with DWT coupled with grey relation analysis (GRA) yielded the best estimation accuracy, with the highest precision of R2 = 0.91 for L6. In conclusion, appropriately scaled DWT analysis can substantially improve the accuracy of extracting TN from UAV hyperspectral images. These outcomes may facilitate the further development of accurate water quality monitoring in sophisticated global waters from drone or satellite hyperspectral data.
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