Hidden Markov Models for Real-Time Estimation of Corn Progress Stages Using MODIS and Meteorological Data

Using Hidden Markov Models for Land Surface Phenology: An Evaluation Across a Range of Land Cover Types in Southeast Spain

Land Surface Phenology (LSP) metrics are increasingly being used as indicators of climate change impacts in ecosystems. For this purpose, it is necessary to use methods that can be applied to large areas with different types of vegetation, including vulnerable semiarid ecosystems that exhibit high spatial variability and low signal-to-noise ratio in seasonality. In this work, we evaluated the use of hidden Markov models (HMM) to extract phenological parameters from Moderate Resolution Imaging Spectroradiometer (MODIS) derived Normalized Difference Vegetation Index (NDVI). We analyzed NDVI time-series data for the period 2000–2018 across a range of land cover types in Southeast Spain, including rice croplands, shrublands, mixed pine forests, and semiarid steppes. Start of Season (SOS) and End of Season (EOS) metrics derived from HMM were compared with those obtained using well-established smoothing methods. When a clear and consistent seasonal variation was present, as was the case in the rice croplands, and when adjusting average curves, the smoothing methods performed as well as expected, with HMM providing consistent results. When spatial variability was high and seasonality was less clearly defined, as in the semiarid shrublands and steppe, the performance of the smoothing methods degraded. In these cases, the results from HMM were also less consistent, yet they were able to provide pixel-wise estimations of the metrics even when comparison methods did not.

A New Framework for Modelling and Monitoring the Conversion of Cultivated Land to Built-up Land Based on a Hierarchical Hidden Semi-Markov Model Using Satellite Image Time Series

Large amounts of farmland loss caused by urban expansion has been a severe global environmental problem. Therefore, monitoring urban encroachment upon farmland is a global issue. In this study, we propose a novel framework for modelling and monitoring the conversion of cultivated land to built-up land using a satellite image time series (SITS). The land-cover change process is modelled by a two-level hierarchical hidden semi-Markov model, which is composed of two Markov chains with hierarchical relationships. The upper chain represents annual land-cover dynamics, and the lower chain encodes the vegetation phenological patterns of each land-cover type. This kind of architecture enables us to represent the multilevel semantic information of SITS at different time scales. Specifically, intra-annual series reflect phenological differences and inter-annual series reflect land-cover dynamics. In this way, we can take advantage of the temporal information contained in the entire time series as well as the prior knowledge of land cover conversion to identify where and when changes occur. As a case study, we applied the proposed method for mapping annual, long-term urban-induced farmland loss from Moderate Resolution Imaging Spectroradiometer (MODIS) Normalized Difference Vegetation Index (NDVI) time series in the Jing-Jin-Tang district, China from 2001 to 2010. The accuracy assessment showed that the proposed method was accurate for detecting conversions from cultivated land to built-up land, with the overall accuracy of 97.72% in the spatial domain and the temporal accuracy of 74.60%. The experimental results demonstrated the superiority of the proposed method in comparison with other state-of-the-art algorithms. In addition, the spatial-temporal patterns of urban expansion revealed in this study are consistent with the findings of previous studies, which also confirms the effectiveness of the proposed method.

Utilizing Collocated Crop Growth Model Simulations to Train Agronomic Satellite Retrieval Algorithms

Due to its worldwide coverage and high revisit time, satellite-based remote sensing provides the ability to monitor in-season crop state variables and yields globally. In this study, we presented a novel approach to training agronomic satellite retrieval algorithms by utilizing collocated crop growth model simulations and solar-reflective satellite measurements. Specifically, we showed that bidirectional long short-term memory networks (BLSTMs) can be trained to predict the in-season state variables and yields of Agricultural Production Systems sIMulator (APSIM) maize crop growth model simulations from collocated Moderate Resolution Imaging Spectroradiometer (MODIS) 500-m satellite measurements over the United States Corn Belt at a regional scale. We evaluated the performance of the BLSTMs through both k-fold cross validation and comparison to regional scale ground-truth yields and phenology. Using k-fold cross validation, we showed that three distinct in-season maize state variables (leaf area index, aboveground biomass, and specific leaf area) can be retrieved with cross-validated R² values ranging from 0.4 to 0.8 for significant portions of the season. Several other plant, soil, and phenological in-season state variables were also evaluated in the study for their retrievability via k-fold cross validation. In addition, by comparing to survey-based United State Department of Agriculture (USDA) ground truth data, we showed that the BLSTMs are able to predict actual county-level yields with R² values between 0.45 and 0.6 and actual state-level phenological dates (emergence, silking, and maturity) with R² values between 0.75 and 0.85. We believe that a potential application of this methodology is to develop satellite products to monitor in-season field-scale crop growth on a global scale by reproducing the methodology with field-scale crop growth model simulations (utilizing farmer-recorded field-scale agromanagement data) and collocated high-resolution satellite data (fused with moderate-resolution satellite data).