Discrimination between Alternative Herbal Medicines from Different Categories with the Electronic Nose

Finding the Spatial Co-Variation of Brain Deformation With Principal Component Analysis

OBJECTIVE

Strain and strain rate are effective traumatic brain injury metrics. In finite element (FE) head model, thousands of elements were used to represent the spatial distribution of these metrics. Owing that these metrics are resulted from brain inertia, their spatial distribution can be represented in more concise pattern. Since head kinematic features and brain deformation vary largely across head impact types (Zhan et al., 2021), we applied principal component analysis (PCA) to find the spatial co-variation of injury metrics (maximum principal strain (MPS), MPS rate (MPSR) and MPS × MPSR) in four impact types: simulation, football, mixed martial arts and car crashes, and used the PCA to find patterns in these metrics and improve the machine learning head model (MLHM).

METHODS

We applied PCA to decompose the injury metrics for all impacts in each impact type, and investigate the spatial co-variation using the first principal component (PC1). Furthermore, we developed a MLHM to predict PC1 and then inverse-transform to predict for all brain elements. The accuracy, the model complexity and the size of training dataset of PCA-MLHM are compared with previous MLHM (Zhan et al., 2021).

RESULTS

PC1 explained variance on the datasets. Based on PC1 coefficients, the corpus callosum and midbrain exhibit high variance on all datasets. Finally, the PCA-MLHM reduced model parameters by 74% with a similar MPS estimation accuracy.

CONCLUSION

The brain injury metric in a dataset can be decomposed into mean components and PC1 with high explained variance.

SIGNIFICANCE

The spatial co-variation analysis enables better interpretation of the patterns in brain injury metrics. It also improves the efficiency of MLHM.

Determination of the geographical origin of Tetrastigma hemsleyanum Diels & Gilg using an electronic nose technique with multiple algorithms

Tetrastigma hemsleyanum Diels & Gilg, an herbal medicinal plant, is planted widely in bamboo forests in southern China to promote economic benefits. Volatile compounds (VOCs) of T. hemsleyanum from different geographical regions are difficult to identify in field forests. In this study, VOCs from leaf samples of different geographical origins were analyzed using an electronic nose with 10 different sensors. Principal component analysis (PCA), partial least-squares regression (PLS), hierarchical cluster analysis (HCA), and radial basis function (RBF) neural networks were used to determine differences among different local samples. The results demonstrated that PCA achieved an accurate discrimination percentage of 91.31% for different samples and HCA separated the samples into different groups. The RBF neural network was successfully applied to predict samples with no specified localities. T. hemsleyanum samples from geographically close regions tended to group together, whereas those from distant geographical regions showed obvious differences. These results indicate that an electronic nose is an effective tool for detecting VOCs and discriminating the geographical origins of T. hemsleyanum. This study provides insights for further studies on the fast detection of VOCs from plants and effect of forests and plant herbal medicines on improving air quality.

AI-based analysis of CT images for rapid triage of COVID-19 patients

The COVID-19 pandemic overwhelms the medical resources in the stressed intensive care unit (ICU) capacity and the shortage of mechanical ventilation (MV). We performed CT-based analysis combined with electronic health records and clinical laboratory results on Cohort 1 (n = 1662 from 17 hospitals) with prognostic estimation for the rapid stratification of PCR confirmed COVID-19 patients. These models, validated on Cohort 2 (n = 700) and Cohort 3 (n = 662) constructed from nine external hospitals, achieved satisfying performance for predicting ICU, MV, and death of COVID-19 patients (AUROC 0.916, 0.919, and 0.853), even on events happened two days later after admission (AUROC 0.919, 0.943, and 0.856). Both clinical and image features showed complementary roles in prediction and provided accurate estimates to the time of progression (p < 0.001). Our findings are valuable for optimizing the use of medical resources in the COVID-19 pandemic. The models are available here: https://github.com/terryli710/COVID_19_Rapid_Triage_Risk_Predictor .

Rapid Estimation of Entire Brain Strain Using Deep Learning Models

OBJECTIVE

Many recent studies have suggested that brain deformation resulting from a head impact is linked to the corresponding clinical outcome, such as mild traumatic brain injury (mTBI). Even though several finite element (FE) head models have been developed and validated to calculate brain deformation based on impact kinematics, the clinical application of these FE head models is limited due to the time-consuming nature of FE simulations. This work aims to accelerate the process of brain deformation calculation and thus improve the potential for clinical applications.

METHODS

We propose a deep learning head model with a five-layer deep neural network and feature engineering, and trained and tested the model on 2511 total head impacts from a combination of head model simulations and on-field college football and mixed martial arts impacts.

RESULTS

The proposed deep learning head model can calculate the maximum principal strain (Green Lagrange) for every element in the entire brain in less than 0.001s with an average root mean squared error of 0.022, and with a standard deviation of 0.001 over twenty repeats with random data partition and model initialization.

CONCLUSION

Trained and tested using the dataset of 2511 head impacts, this model can be applied to various sports in the calculation of brain strain with accuracy, and its applicability can even further be extended by incorporating data from other types of head impacts.

SIGNIFICANCE

In addition to the potential clinical application in real-time brain deformation monitoring, this model will help researchers estimate the brain strain from a large number of head impacts more efficiently than using FE models.

Bio-Inspired Strategies for Improving the Selectivity and Sensitivity of Artificial Noses: A Review

Artificial noses are broad-spectrum multisensors dedicated to the detection of volatile organic compounds (VOCs). Despite great recent progress, they still suffer from a lack of sensitivity and selectivity. We will review, in a systemic way, the biomimetic strategies for improving these performance criteria, including the design of sensing materials, their immobilization on the sensing surface, the sampling of VOCs, the choice of a transduction method, and the data processing. This reflection could help address new applications in domains where high-performance artificial noses are required such as public security and safety, environment, industry, or healthcare.

Discrimination of Different Species of Dendrobium with an Electronic Nose Using Aggregated Conformal Predictor

A method using electronic nose to discriminate 10 different species of dendrobium, which is a kind of precious herb with medicinal application, was developed with high efficiency and low cost. A framework named aggregated conformal prediction was applied to make predictions with accuracy and reliability for E-nose detection. This method achieved a classification accuracy close to 80% with an average improvement of 6.2% when compared with the results obtained by using traditional inductive conformal prediction. It also provided reliability assessment to show more comprehensive information for each prediction. Meanwhile, two main indicators of conformal predictor, validity and efficiency, were also compared and discussed in this work. The result shows that the approach integrating electronic nose with aggregated conformal prediction to classify the species of dendrobium with reliability and validity is promising.