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Lin N, Shao X, Wu H, Jiang R, Wu M. Heavy Metal Concentration Estimation for Different Farmland Soils Based on Projection Pursuit and LightGBM with Hyperspectral Images. SENSORS (BASEL, SWITZERLAND) 2024; 24:3251. [PMID: 38794105 PMCID: PMC11125194 DOI: 10.3390/s24103251] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2024] [Revised: 05/12/2024] [Accepted: 05/19/2024] [Indexed: 05/26/2024]
Abstract
Heavy metal pollution in farmland soil threatens soil environmental quality. It is an important task to quickly grasp the status of heavy metal pollution in farmland soil in a region. Hyperspectral remote sensing technology has been widely used in soil heavy metal concentration monitoring. How to improve the accuracy and reliability of its estimation model is a hot topic. This study analyzed 440 soil samples from Sihe Town and the surrounding agricultural areas in Yushu City, Jilin Province. Considering the differences between different types of soils, a local regression model of heavy metal concentrations (As and Cu) was established based on projection pursuit (PP) and light gradient boosting machine (LightGBM) algorithms. Based on the estimations, a spatial distribution map of soil heavy metals in the region was drawn. The findings of this study showed that considering the differences between different soils to construct a local regression estimation model of soil heavy metal concentration improved the estimation accuracy. Specifically, the relative percent difference (RPD) of As and Cu element estimations in black soil increased the most, by 0.30 and 0.26, respectively. The regional spatial distribution map of heavy metal concentration derived from local regression showed high spatial variability. The number of characteristic bands screened by the PP method accounted for 10-13% of the total spectral bands, effectively reducing the model complexity. Compared with the traditional machine model, the LightGBM model showed better estimation ability, and the highest determination coefficients (R2) of different soil validation sets reached 0.73 (As) and 0.75 (Cu), respectively. In this study, the constructed PP-LightGBM estimation model takes into account the differences in soil types, which effectively improves the accuracy and reliability of hyperspectral image estimation of soil heavy metal concentration and provides a reference for drawing large-scale spatial distributions of heavy metals from hyperspectral images and mastering soil environmental quality.
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Affiliation(s)
- Nan Lin
- College of Surveying and Exploration Engineering, Jilin Jianzhu University, Changchun 130118, China; (N.L.); (X.S.); (M.W.)
- Jilin Province Natural Resources Remote Sensing Information Technology Innovation Laboratory, Changchun 130118, China
| | - Xiaofan Shao
- College of Surveying and Exploration Engineering, Jilin Jianzhu University, Changchun 130118, China; (N.L.); (X.S.); (M.W.)
| | - Huizhi Wu
- Henan Academy of Geology, Zhengzhou 450016, China
| | - Ranzhe Jiang
- College of Biological and Agricultural Engineering, Jilin University, Changchun 130012, China;
| | - Menghong Wu
- College of Surveying and Exploration Engineering, Jilin Jianzhu University, Changchun 130118, China; (N.L.); (X.S.); (M.W.)
- College of Resource and Environmental Science, Jilin Agricultural University, Changchun 130118, China
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Zhong L, Yang S, Rong Y, Qian J, Zhou L, Li J, Sun Z. Indirect Estimation of Heavy Metal Contamination in Rice Soil Using Spectral Techniques. PLANTS (BASEL, SWITZERLAND) 2024; 13:831. [PMID: 38592865 PMCID: PMC10974069 DOI: 10.3390/plants13060831] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2024] [Revised: 02/29/2024] [Accepted: 03/09/2024] [Indexed: 04/11/2024]
Abstract
The rapid growth of industrialization and urbanization in China has led to an increase in soil heavy metal pollution, which poses a serious threat to ecosystem safety and human health. The advancement of spectral technology offers a way to rapidly and non-destructively monitor soil heavy metal content. In order to explore the potential of rice leaf spectra to indirectly estimate soil heavy metal content. We collected farmland soil samples and measured rice leaf spectra in Xushe Town, Yixing City, Jiangsu Province, China. In the laboratory, the heavy metals Cd and As were determined. In order to establish an estimation model between the pre-processed spectra and the soil heavy metals Cd and As content, a genetic algorithm (GA) was used to optimise the partial least squares regression (PLSR). The model's accuracy was evaluated and the best estimation model was obtained. The results showed that spectral pre-processing techniques can extract hidden information from the spectra. The first-order derivative of absorbance was more effective in extracting spectral sensitive information from rice leaf spectra. The GA-PLSR model selects only about 10% of the bands and has better accuracy in spectral modeling than the PLSR model. The spectral reflectance of rice leaves has the capacity to estimate Cd content in the soil (relative percent difference [RPD] = 2.09) and a good capacity to estimate As content in the soil (RPD = 2.97). Therefore, the content of the heavy metals Cd and As in the soil can be estimated indirectly from the spectral data of rice leaves. This study provides a reference for future remote sensing monitoring of soil heavy metal pollution in farmland that is quantitative, dynamic, and non-destructive over a large area.
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Affiliation(s)
- Liang Zhong
- State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, Nanjing 210023, China; (L.Z.)
- Department of Ecology, School of Life Sciences, Nanjing University, Nanjing 210023, China
| | - Shengjie Yang
- State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, Nanjing 210023, China; (L.Z.)
- Department of Ecology, School of Life Sciences, Nanjing University, Nanjing 210023, China
| | - Yicheng Rong
- State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, Nanjing 210023, China; (L.Z.)
- Department of Ecology, School of Life Sciences, Nanjing University, Nanjing 210023, China
| | - Jiawei Qian
- State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, Nanjing 210023, China; (L.Z.)
- Department of Ecology, School of Life Sciences, Nanjing University, Nanjing 210023, China
| | - Lei Zhou
- Livestock Development and Promotion Center, Linyi 276037, China
| | - Jianlong Li
- State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, Nanjing 210023, China; (L.Z.)
- Department of Ecology, School of Life Sciences, Nanjing University, Nanjing 210023, China
| | - Zhengguo Sun
- College of Agro-Grassland Science, Nanjing Agricultural University, Nanjing 210095, China
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Identification of Soil Arsenic Contamination in Rice Paddy Field Based on Hyperspectral Reflectance Approach. SOIL SYSTEMS 2022. [DOI: 10.3390/soilsystems6010030] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Toxic heavy metals in soil negatively impact soil’s physical, biological, and chemical characteristics, and also human wellbeing. The traditional approach of chemical analysis procedures for assessing soil toxicant element concentration is time-consuming and expensive. Due to accessibility, reliability, and rapidity at a high temporal and spatial resolution, hyperspectral remote sensing within the Vis-NIR region is an indispensable and widely used approach in today’s world for monitoring broad regions and controlling soil arsenic (As) pollution in agricultural land. This study investigates the effectiveness of hyperspectral reflectance approaches in different regions for assessing soil As pollutants, as well as a basic review of space-borne earth observation hyperspectral sensors. Multivariate and various regression models were developed to avoid collinearity and improve prediction capabilities using spectral bands with the perfect correlation coefficients to access the soil As contamination in previous studies. This review highlights some of the most significant factors to consider when developing a remote sensing approach for soil As contamination in the future, as well as the potential limits of employing spectroscopy data.
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Detecting Arsenic Contamination Using Satellite Imagery and Machine Learning. TOXICS 2021; 9:toxics9120333. [PMID: 34941767 PMCID: PMC8707206 DOI: 10.3390/toxics9120333] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/14/2021] [Revised: 11/17/2021] [Accepted: 11/29/2021] [Indexed: 11/17/2022]
Abstract
Arsenic, a potent carcinogen and neurotoxin, affects over 200 million people globally. Current detection methods are laborious, expensive, and unscalable, being difficult to implement in developing regions and during crises such as COVID-19. This study attempts to determine if a relationship exists between soil’s hyperspectral data and arsenic concentration using NASA’s Hyperion satellite. It is the first arsenic study to use satellite-based hyperspectral data and apply a classification approach. Four regression machine learning models are tested to determine this correlation in soil with bare land cover. Raw data are converted to reflectance, problematic atmospheric influences are removed, characteristic wavelengths are selected, and four noise reduction algorithms are tested. The combination of data augmentation, Genetic Algorithm, Second Derivative Transformation, and Random Forest regression (R2=0.840 and normalized root mean squared error (re-scaled to [0,1]) = 0.122) shows strong correlation, performing better than past models despite using noisier satellite data (versus lab-processed samples). Three binary classification machine learning models are then applied to identify high-risk shrub-covered regions in ten U.S. states, achieving strong accuracy (=0.693) and F1-score (=0.728). Overall, these results suggest that such a methodology is practical and can provide a sustainable alternative to arsenic contamination detection.
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Han A, Lu X, Qing S, Bao Y, Bao Y, Ma Q, Liu X, Zhang J. Rapid Determination of Low Heavy Metal Concentrations in Grassland Soils around Mining Using Vis-NIR Spectroscopy: A Case Study of Inner Mongolia, China. SENSORS 2021; 21:s21093220. [PMID: 34066493 PMCID: PMC8124297 DOI: 10.3390/s21093220] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/03/2021] [Revised: 04/29/2021] [Accepted: 04/30/2021] [Indexed: 12/07/2022]
Abstract
Proximal sensing offers a novel means for determination of the heavy metal concentration in soil, facilitating low cost and rapid analysis over large areas. In this respect, spectral data and model variables play an important role. Thus far, no attempts have been made to estimate soil heavy metal content using continuum-removal (CR), different preprocessing and statistical methods, and different modeling variables. Considering the adsorption and retention of heavy metals in spectrally active constituents in soil, this study proposes a method for determining low heavy metal concentrations in soil using spectral bands associated with soil organic matter (SOM) and visible–near-infrared (Vis–NIR). To rapidly determine the concentration of heavy metals using hyperspectral data, partial least squares regression (PLSR), principal component regression (PCR), and support vector machine regression (SVMR) statistical methods and 16 preprocessing combinations were developed and explored to determine an optimal combination. The results showed that the multiplicative scatter correction and standard normal variate preprocessing methods evaluated with the second derivative spectral transformation method could accurately determine soil Cr and Ni concentrations. The root-mean-square error (RMSE) values of Vis–NIR model combinations with PLSR, PCR, and SVMR were 0.34, 3.42, and 2.15 for Cr, and 0.07, 1.78, and 1.14 for Ni, respectively. Soil Cr and Ni showed strong spectral responses to the Vis–NIR spectral band. The R2 value of the Vis–NIR-based PLSR model was higher than 0.99, and the RMSE value was 0.07–0.34, suggesting higher stability and accuracy. The results were more accurate for Ni than Cr, and PLSR showed the best performance, followed by SVMR and PCR. This perspective has critical implications for guiding quantitative biogeochemical analysis using proximal sensing data.
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Affiliation(s)
- Aru Han
- School of Environment, Northeast Normal University, Changchun 130024, China; (A.H.); (Y.B.); (Q.M.); (X.L.)
- Laboratory for Vegetation Ecology, Ministry of Education, Changchun 130024, China
- State Environmental Protection Key Laboratory of Wetland Ecology and Vegetation Restoration, Changchun 130024, China
| | - Xiaoling Lu
- College of Tourism and Geographical Science, Baicheng Normal University, Baicheng 137000, China;
| | - Song Qing
- College of Geographical Science, Inner Mongolia Normal University, Hohhot 010022, China; (S.Q.); (Y.B.)
| | - Yongbin Bao
- School of Environment, Northeast Normal University, Changchun 130024, China; (A.H.); (Y.B.); (Q.M.); (X.L.)
| | - Yuhai Bao
- College of Geographical Science, Inner Mongolia Normal University, Hohhot 010022, China; (S.Q.); (Y.B.)
| | - Qing Ma
- School of Environment, Northeast Normal University, Changchun 130024, China; (A.H.); (Y.B.); (Q.M.); (X.L.)
| | - Xingpeng Liu
- School of Environment, Northeast Normal University, Changchun 130024, China; (A.H.); (Y.B.); (Q.M.); (X.L.)
| | - Jiquan Zhang
- School of Environment, Northeast Normal University, Changchun 130024, China; (A.H.); (Y.B.); (Q.M.); (X.L.)
- Laboratory for Vegetation Ecology, Ministry of Education, Changchun 130024, China
- State Environmental Protection Key Laboratory of Wetland Ecology and Vegetation Restoration, Changchun 130024, China
- Correspondence: ; Tel.: +86-135-9608-6467
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