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Rabbani MHR, Islam SMR. Deep learning networks based decision fusion model of EEG and fNIRS for classification of cognitive tasks. Cogn Neurodyn 2024; 18:1489-1506. [PMID: 39104699 PMCID: PMC11297873 DOI: 10.1007/s11571-023-09986-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2022] [Revised: 04/05/2023] [Accepted: 06/14/2023] [Indexed: 08/07/2024] Open
Abstract
The detection of the cognitive tasks performed by a subject during data acquisition of a neuroimaging method has a wide range of applications: functioning of brain-computer interface (BCI), detection of neuronal disorders, neurorehabilitation for disabled patients, and many others. Recent studies show that the combination or fusion of electroencephalography (EEG) and functional near-infrared spectroscopy (fNIRS) demonstrates improved classification and detection performance compared to sole-EEG and sole-fNIRS. Deep learning (DL) networks are suitable for the classification of large volume time-series data like EEG and fNIRS. This study performs the decision fusion of EEG and fNIRS. The classification of EEG, fNIRS, and decision-fused EEG-fNIRSinto cognitive task labels is performed by DL networks. Two different open-source datasets of simultaneously recorded EEG and fNIRS are examined in this study. Dataset 01 is comprised of 26 subjects performing 3 cognitive tasks: n-back, discrimination or selection response (DSR), and word generation (WG). After data acquisition, fNIRS is converted to oxygenated hemoglobin (HbO2) and deoxygenated hemoglobin (HbR) in Dataset 01. Dataset 02 is comprised of 29 subjects who performed 2 tasks: motor imagery and mental arithmetic. The classification procedure of EEG and fNIRS (or HbO2, HbR) are carried out by 7 DL classifiers: convolutional neural network (CNN), long short-term memory network (LSTM), gated recurrent unit (GRU), CNN-LSTM, CNN-GRU, LSTM-GRU, and CNN-LSTM-GRU. After the classification of single modalities, their prediction scores or decisions are combined to obtain the decision-fused modality. The classification performance is measured by overall accuracy and area under the ROC curve (AUC). The highest accuracy and AUC recorded in Dataset 01 are 96% and 100% respectively; both by the decision fusion modality using CNN-LSTM-GRU. For Dataset 02, the highest accuracy and AUC are 82.76% and 90.44% respectively; both by the decision fusion modality using CNN-LSTM. The experimental result shows that decision-fused EEG-HbO2-HbR and EEG-fNIRSdeliver higher performances compared to their constituent unimodalities in most cases. For DL classifiers, CNN-LSTM-GRU in Dataset 01 and CNN-LSTM in Dataset 02 yield the highest performance.
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Akila V, Christaline JA, Edward AS. Novel Feature Generation for Classification of Motor Activity from Functional Near-Infrared Spectroscopy Signals Using Machine Learning. Diagnostics (Basel) 2024; 14:1008. [PMID: 38786306 PMCID: PMC11119315 DOI: 10.3390/diagnostics14101008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2024] [Revised: 05/03/2024] [Accepted: 05/07/2024] [Indexed: 05/25/2024] Open
Abstract
Recent research in the field of cognitive motor action decoding focuses on data acquired from Functional Near-Infrared Spectroscopy (fNIRS) and its analysis. This research aims to classify two different motor activities, namely, mental drawing (MD) and spatial navigation (SN), using fNIRS data from non-motor baseline data and other motor activities. Accurate activity detection in non-stationary signals like fNIRS is challenging and requires complex feature descriptors. As a novel framework, a new feature generation by fusion of wavelet feature, Hilbert, symlet, and Hjorth parameters is proposed for improving the accuracy of the classification. This new fused feature has statistical descriptor elements, time-localization in the frequency domain, edge feature, texture features, and phase information to detect and locate the activity accurately. Three types of independent component analysis, including FastICA, Picard, and Infomax were implemented for preprocessing which removes noises and motion artifacts. Two independent binary classifiers are designed to handle the complexity of classification in which one is responsible for mental drawing (MD) detection and the other one is spatial navigation (SN). Four different types of algorithms including nearest neighbors (KNN), Linear Discriminant Analysis (LDA), light gradient-boosting machine (LGBM), and Extreme Gradient Boosting (XGBOOST) were implemented. It has been identified that the LGBM classifier gives high accuracies-98% for mental drawing and 97% for spatial navigation. Comparison with existing research proves that the proposed method gives the highest classification accuracies. Statistical validation of the proposed new feature generation by the Kruskal-Wallis H-test and Mann-Whitney U non-parametric test proves the reliability of the proposed mechanism.
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Affiliation(s)
- V. Akila
- Department of ECE, SRM Institute of Science and Technology, Vadapalani, Chennai 600026, India; (J.A.C.); (A.S.E.)
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Pereira FES, Jagatheesaperumal SK, Benjamin SR, Filho PCDN, Duarte FT, de Albuquerque VHC. Advancements in non-invasive microwave brain stimulation: A comprehensive survey. Phys Life Rev 2024; 48:132-161. [PMID: 38219370 DOI: 10.1016/j.plrev.2024.01.003] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2024] [Accepted: 01/07/2024] [Indexed: 01/16/2024]
Abstract
This survey provides a comprehensive insight into the world of non-invasive brain stimulation and focuses on the evolving landscape of deep brain stimulation through microwave research. Non-invasive brain stimulation techniques provide new prospects for comprehending and treating neurological disorders. We investigate the methods shaping the future of deep brain stimulation, emphasizing the role of microwave technology in this transformative journey. Specifically, we explore antenna structures and optimization strategies to enhance the efficiency of high-frequency microwave stimulation. These advancements can potentially revolutionize the field by providing a safer and more precise means of modulating neural activity. Furthermore, we address the challenges that researchers currently face in the realm of microwave brain stimulation. From safety concerns to methodological intricacies, this survey outlines the barriers that must be overcome to fully unlock the potential of this technology. This survey serves as a roadmap for advancing research in microwave brain stimulation, pointing out potential directions and innovations that promise to reshape the field.
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Affiliation(s)
| | - Senthil Kumar Jagatheesaperumal
- Department of Teleinformatics Engineering, Federal University of Ceará, Fortaleza, 60455-970, Ceará, Brazil; Department of Electronics and Communication Engineering, Mepco Schlenk Engineering College, Sivakasi, 626005, Tamilnadu, India
| | - Stephen Rathinaraj Benjamin
- Department of Pharmacology and Pharmacy, Laboratory of Behavioral Neuroscience, Faculty of Medicine, Federal University of Ceará, Fortaleza, 60430-160, Ceará, Brazil
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Qi X, Xu W, Li G. Neuroimaging Study of Brain Functional Differences in Generalized Anxiety Disorder and Depressive Disorder. Brain Sci 2023; 13:1282. [PMID: 37759883 PMCID: PMC10526432 DOI: 10.3390/brainsci13091282] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2023] [Revised: 08/23/2023] [Accepted: 08/31/2023] [Indexed: 09/29/2023] Open
Abstract
Generalized anxiety disorder (GAD) and depressive disorder (DD) are distinct mental disorders, which are characterized by complex and unique neuroelectrophysiological mechanisms in psychiatric neurosciences. The understanding of the brain functional differences between GAD and DD is crucial for the accurate diagnosis and clinical efficacy evaluation. The aim of this study was to reveal the differences in functional brain imaging between GAD and DD based on multidimensional electroencephalogram (EEG) characteristics. To this end, 10 min resting-state EEG signals were recorded from 38 GAD and 34 DD individuals. Multidimensional EEG features were subsequently extracted, which include power spectrum density (PSD), fuzzy entropy (FE), and phase lag index (PLI). Then, a direct statistical analysis (i.e., ANOVA) and three ensemble learning models (i.e., Random Forest (RF), Light Gradient Boosting Machine (LightGBM), eXtreme Gradient Boosting (XGBoost)) were used on these EEG features for the differential recognitions. Our results showed that DD has significantly higher PSD values in the alpha1 and beta band, and a higher FE in the beta band, in comparison with GAD, along with the aberrant functional connections in all four bands between GAD and DD. Moreover, machine learning analysis further revealed that the distinct features predominantly occurred in the beta band and functional connections. Here, we show that DD has higher power and more complex brain activity patterns in the beta band and reorganized brain functional network structures in all bands compared to GAD. In sum, these findings move towards the practical identification of brain functional differences between GAD and DD.
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Affiliation(s)
- Xuchen Qi
- Department of Neurosurgery, Sir Run Run Shaw Hospital, Zhejiang University School of Medicine, Hangzhou 310000, China;
- Department of Neurosurgery, Shaoxing People’s Hospital, Shaoxing 312000, China
| | - Wanxiu Xu
- College of Engineering, Zhejiang Normal University, Jinhua 321004, China;
| | - Gang Li
- College of Mathematical Medicine, Zhejiang Normal University, Jinhua 321004, China
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Alfeo AL, Zippo AG, Catrambone V, Cimino MGCA, Toschi N, Valenza G. From local counterfactuals to global feature importance: efficient, robust, and model-agnostic explanations for brain connectivity networks. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2023; 236:107550. [PMID: 37086584 DOI: 10.1016/j.cmpb.2023.107550] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2023] [Revised: 04/14/2023] [Accepted: 04/14/2023] [Indexed: 05/03/2023]
Abstract
BACKGROUND Explainable artificial intelligence (XAI) is a technology that can enhance trust in mental state classifications by providing explanations for the reasoning behind artificial intelligence (AI) models outputs, especially for high-dimensional and highly-correlated brain signals. Feature importance and counterfactual explanations are two common approaches to generate these explanations, but both have drawbacks. While feature importance methods, such as shapley additive explanations (SHAP), can be computationally expensive and sensitive to feature correlation, counterfactual explanations only explain a single outcome instead of the entire model. METHODS To overcome these limitations, we propose a new procedure for computing global feature importance that involves aggregating local counterfactual explanations. This approach is specifically tailored to fMRI signals and is based on the hypothesis that instances close to the decision boundary and their counterfactuals mainly differ in the features identified as most important for the downstream classification task. We refer to this proposed feature importance measure as Boundary Crossing Solo Ratio (BoCSoR), since it quantifies the frequency with which a change in each feature in isolation leads to a change in classification outcome, i.e., the crossing of the model's decision boundary. RESULTS AND CONCLUSIONS Experimental results on synthetic data and real publicly available fMRI data from the Human Connect project show that the proposed BoCSoR measure is more robust to feature correlation and less computationally expensive than state-of-the-art methods. Additionally, it is equally effective in providing an explanation for the behavior of any AI model for brain signals. These properties are crucial for medical decision support systems, where many different features are often extracted from the same physiological measures and a gold standard is absent. Consequently, computing feature importance may become computationally expensive, and there may be a high probability of mutual correlation among features, leading to unreliable results from state-of-the-art XAI methods.
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Affiliation(s)
- Antonio Luca Alfeo
- Department of Information Engineering, University of Pisa, Largo Lucio Lazzarino, 1, Pisa, 56126, Italy; Bioengineering & Robotics Research Center E. Piaggio, University of Pisa, Largo Lucio Lazzarino, 1, Pisa, 56126, Italy.
| | - Antonio G Zippo
- Institute of Neuroscience, Consiglio Nazionale delle Ricerche, Via Raoul Follereau, 3, Vedano al Lambro (MB), 20854, Italy
| | - Vincenzo Catrambone
- Department of Information Engineering, University of Pisa, Largo Lucio Lazzarino, 1, Pisa, 56126, Italy; Bioengineering & Robotics Research Center E. Piaggio, University of Pisa, Largo Lucio Lazzarino, 1, Pisa, 56126, Italy
| | - Mario G C A Cimino
- Department of Information Engineering, University of Pisa, Largo Lucio Lazzarino, 1, Pisa, 56126, Italy; Bioengineering & Robotics Research Center E. Piaggio, University of Pisa, Largo Lucio Lazzarino, 1, Pisa, 56126, Italy
| | - Nicola Toschi
- Department of Biomedicine and Prevention, University of Rome Tor Vergata, Via Montpellier 1, Roma, 00133, Italy
| | - Gaetano Valenza
- Department of Information Engineering, University of Pisa, Largo Lucio Lazzarino, 1, Pisa, 56126, Italy; Bioengineering & Robotics Research Center E. Piaggio, University of Pisa, Largo Lucio Lazzarino, 1, Pisa, 56126, Italy
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Qi X, Fang J, Sun Y, Xu W, Li G. Altered Functional Brain Network Structure between Patients with High and Low Generalized Anxiety Disorder. Diagnostics (Basel) 2023; 13:diagnostics13071292. [PMID: 37046509 PMCID: PMC10093329 DOI: 10.3390/diagnostics13071292] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2023] [Revised: 03/26/2023] [Accepted: 03/27/2023] [Indexed: 04/01/2023] Open
Abstract
To investigate the differences in functional brain network structures between patients with a high level of generalized anxiety disorder (HGAD) and those with a low level of generalized anxiety disorder (LGAD), a resting-state electroencephalogram (EEG) was recorded in 30 LGAD patients and 21 HGAD patients. Functional connectivity between all pairs of brain regions was determined by the Phase Lag Index (PLI) to construct a functional brain network. Then, the characteristic path length, clustering coefficient, and small world were calculated to estimate functional brain network structures. The results showed that the PLI values of HGAD were significantly increased in alpha2, and significantly decreased in the theta and alpha1 rhythms, and the small-world attributes for both HGAD patients and LGAD patients were less than one for all the rhythms. Moreover, the small-world values of HGAD were significantly lower than those of LGAD in the theta and alpha2 rhythms, which indicated that the brain functional network structure would deteriorate with the increase in generalized anxiety disorder (GAD) severity. Our findings may play a role in the development and understanding of LGAD and HGAD to determine whether interventions that target these brain changes may be effective in treating GAD.
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Affiliation(s)
- Xuchen Qi
- Department of Neurosurgery, Sir Run Run Shaw Hospital, Zhejiang University School of Medicine, Hangzhou 310000, China
- Department of Neurosurgery, Shaoxing People’s Hospital, Shaoxing 312000, China
| | - Jiaqi Fang
- College of Engineering, Zhejiang Normal University, Jinhua 321004, China
| | - Yu Sun
- Key Laboratory for Biomedical Engineering of Ministry of Education of China, Department of Biomedical Engineering, Zhejiang University, Hangzhou 310000, China
| | - Wanxiu Xu
- College of Engineering, Zhejiang Normal University, Jinhua 321004, China
- Correspondence: (W.X.); (G.L.)
| | - Gang Li
- College of Mathematical Medicine, Zhejiang Normal University, Jinhua 321004, China
- Correspondence: (W.X.); (G.L.)
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