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Raizada G, Brunel B, Guillouzouic J, Aubertin K, Shigeto S, Nishigaki Y, Lesniewska E, Le Ferrec E, Boireau W, Elie-Caille C. Raman spectroscopy of large extracellular vesicles derived from human microvascular endothelial cells to detect benzo[a]pyrene exposure. Anal Bioanal Chem 2024; 416:6639-6649. [PMID: 39352473 DOI: 10.1007/s00216-024-05567-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2024] [Revised: 09/18/2024] [Accepted: 09/20/2024] [Indexed: 11/07/2024]
Abstract
Extracellular vesicles (EVs) have shown great potential as biomarkers since they reflect the physio-pathological status of the producing cell. In the context of cytotoxicity, it has been found that exposing cells to toxicants leads to changes in protein expression and the cargo of the EVs they produce. Here, we studied large extracellular vesicles (lEVs) derived from human microvascular endothelial cells (HMEC-1) to detect the modifications induced by cell exposure to benzo[a]pyrene (B[a]P). We used a custom CaF2-based biochip which allowed hyphenated techniques of investigation: surface plasmon resonance imaging (SPRi) to monitor the adsorption of objects, atomic force microscopy (AFM) to characterise EVs' size and morphology, and Raman spectroscopy to detect molecular modifications. Results obtained on EVs by Raman microscopy and tip-enhanced Raman spectroscopy (TERS) showed significant differences induced by B[a]P in the high wavenumber region of Raman spectra (2800 to 3000 cm-1), corresponding mainly to lipid modifications. Two types of spectra were detected in the control sample. A support vector machine (SVM) model was trained on the pre-processed spectral data to differentiate between EVs from cells exposed or not to B[a]P at the spectrum level; this model could achieve a sensitivity of 88% and a specificity of 99.5%. Thus, this experimental setup facilitated the distinction between EVs originating from two cell culture conditions and enabled the discrimination of EV subsets within one cell culture condition.
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Affiliation(s)
- Geetika Raizada
- Université de Franche-Comté, CNRS, Institut FEMTO-ST, 25000, Besançon, France
| | - Benjamin Brunel
- Université de Franche-Comté, CNRS, Institut FEMTO-ST, 25000, Besançon, France.
| | - Joan Guillouzouic
- Univ Rennes, Inserm, EHESP, Irset (Institut de Recherche en Santé Environnement et Travail), UMR_S 1085, 35000, Rennes, France
| | - Kelly Aubertin
- Université Paris Cité, MSC, CNRS, IVETh Expertise Facility, 45, Rue Des Saints-Pères, 75006, Paris, France
| | - Shinsuke Shigeto
- Department of Chemistry, Graduate School of Science and Technology, Kwansei Gakuin University, 1 Gakuen Uegahara, Sanda, Hyogo, 669-1330, Japan
| | - Yuka Nishigaki
- Department of Chemistry, Graduate School of Science and Technology, Kwansei Gakuin University, 1 Gakuen Uegahara, Sanda, Hyogo, 669-1330, Japan
| | - Eric Lesniewska
- ICB UMR 6303, CNRS, University of Bourgogne Franche-Comté, 21078, Dijon, France
| | - Eric Le Ferrec
- Univ Rennes, Inserm, EHESP, Irset (Institut de Recherche en Santé Environnement et Travail), UMR_S 1085, 35000, Rennes, France
| | - Wilfrid Boireau
- Université de Franche-Comté, CNRS, Institut FEMTO-ST, 25000, Besançon, France
| | - Céline Elie-Caille
- Université de Franche-Comté, CNRS, Institut FEMTO-ST, 25000, Besançon, France
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Wang C, Zhang G, Yan J. An optimized back propagation neural network on small samples spectral data to predict nitrite in water. ENVIRONMENTAL RESEARCH 2024; 247:118199. [PMID: 38246303 DOI: 10.1016/j.envres.2024.118199] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2023] [Revised: 01/02/2024] [Accepted: 01/11/2024] [Indexed: 01/23/2024]
Abstract
Accurate detection of pollutant levels in water bodies using fusion algorithms combined with spectral data has become a critical issue for water conservation. However, the number of samples is too small and the model is unstable, which often leads to poor prediction and fails to achieve the measurement goal well. To address these challenges, this paper proposes a practical and effective method to precisely predict the concentrations of nitrite pollution in aquatic environments. The proposed method consists of three steps. Firstly, the dimension of the spectral data is reduced using Kernel Principal Component Analysis (KPCA), followed by sample augmentation using Generative Adversarial Network (GAN) to reduce calculation cost and increase the diversity and scale of the data. Secondly, several improvement strategies, including multi-cluster competitive and adaptive parameter updating, are introduced to enhance the capability of the Particle Swarm Optimization (PSO) algorithm. The improved PSO algorithm is then applied to optimize the initialization weights and biases of the Back Propagation neural network, thereby improving the model fitting and training performance. Finally, the developed prediction model is employed to predict the test set samples. The result suggests that the R2, RMSE, and MAE values are 0.976290, 0.008626, and 0.006617, which outperform the state-of-the-art and provided a promising model for the prediction of nitrite concentration in water.
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Affiliation(s)
- Cailing Wang
- School of Computer Science, Xi'an Shiyou University, Xi'an, China.
| | - Guohao Zhang
- School of Computer Science, Xi'an Shiyou University, Xi'an, China
| | - Jingjing Yan
- School of Computer Science, Xi'an Shiyou University, Xi'an, China
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Mofijur M, Hasan MM, Ahmed SF, Djavanroodi F, Fattah IMR, Silitonga AS, Kalam MA, Zhou JL, Khan TMY. Advances in identifying and managing emerging contaminants in aquatic ecosystems: Analytical approaches, toxicity assessment, transformation pathways, environmental fate, and remediation strategies. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2024; 341:122889. [PMID: 37972679 DOI: 10.1016/j.envpol.2023.122889] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2023] [Revised: 10/30/2023] [Accepted: 11/05/2023] [Indexed: 11/19/2023]
Abstract
Emerging contaminants (ECs) are increasingly recognized as threats to human health and ecosystems. This review evaluates advanced analytical methods, particularly mass spectrometry, for detecting ECs and understanding their toxicity, transformation pathways, and environmental distribution. Our findings underscore the reliability of current techniques and the potential of upcoming methods. The adverse effects of ECs on aquatic life necessitate both in vitro and in vivo toxicity assessments. Evaluating the distribution and degradation of ECs reveals that they undergo physical, chemical, and biological transformations. Remediation strategies such as advanced oxidation, adsorption, and membrane bioreactors effectively treat EC-contaminated waters, with combinations of these techniques showing the highest efficacy. To minimize the impact of ECs, a proactive approach involving monitoring, regulations, and public education is vital. Future research should prioritize the refining of detection methods and formulation of robust policies for EC management.
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Affiliation(s)
- M Mofijur
- Centre for Technology in Water and Wastewater, School of Civil and Environmental Engineering, University of Technology Sydney, Ultimo, NSW, 2007, Australia.
| | - M M Hasan
- Centre for Technology in Water and Wastewater, School of Civil and Environmental Engineering, University of Technology Sydney, Ultimo, NSW, 2007, Australia; School of Engineering and Technology, Central Queensland University, QLD, 4701, Australia
| | - Shams Forruque Ahmed
- Science and Math Program, Asian University for Women, Chattogram, 4000, Bangladesh
| | - F Djavanroodi
- Mechanical Engineering Department, Prince Mohammad Bin Fahd University, Al Khobar, 31952, Saudi Arabia
| | - I M R Fattah
- Centre for Technology in Water and Wastewater, School of Civil and Environmental Engineering, University of Technology Sydney, Ultimo, NSW, 2007, Australia
| | - A S Silitonga
- Centre for Technology in Water and Wastewater, School of Civil and Environmental Engineering, University of Technology Sydney, Ultimo, NSW, 2007, Australia
| | - M A Kalam
- Centre for Technology in Water and Wastewater, School of Civil and Environmental Engineering, University of Technology Sydney, Ultimo, NSW, 2007, Australia
| | - John L Zhou
- Centre for Technology in Water and Wastewater, School of Civil and Environmental Engineering, University of Technology Sydney, Ultimo, NSW, 2007, Australia; Centre for Green Technology, School of Civil and Environmental Engineering, University of Technology Sydney, Ultimo, NSW, 2007, Australia
| | - T M Yunus Khan
- Mechanical Engineering Department, College of Engineering, King Khalid University, Abha, Saudi Arabia
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Bogdan R, Paliuc C, Crisan-Vida M, Nimara S, Barmayoun D. Low-Cost Internet-of-Things Water-Quality Monitoring System for Rural Areas. SENSORS (BASEL, SWITZERLAND) 2023; 23:3919. [PMID: 37112259 PMCID: PMC10142157 DOI: 10.3390/s23083919] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/06/2023] [Revised: 04/05/2023] [Accepted: 04/06/2023] [Indexed: 06/19/2023]
Abstract
Water is a vital source for life and natural environments. This is the reason why water sources should be constantly monitored in order to detect any pollutants that might jeopardize the quality of water. This paper presents a low-cost internet-of-things system that is capable of measuring and reporting the quality of different water sources. It comprises the following components: Arduino UNO board, Bluetooth module BT04, temperature sensor DS18B20, pH sensor-SEN0161, TDS sensor-SEN0244, turbidity sensor-SKU SEN0189. The system will be controlled and managed from a mobile application, which will monitor the actual status of water sources. We propose to monitor and evaluate the quality of water from five different water sources in a rural settlement. The results show that most of the water sources we have monitored are proper for consumption, with a single exception where the TDS values are not within proper limits, as they outperform the maximum accepted value of 500 ppm.
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Affiliation(s)
- Razvan Bogdan
- Faculty of Automation and Computers, Politehnica University of Timișoara, 300006 Timisoara, Romania
| | - Camelia Paliuc
- Faculty of Automation and Computers, Politehnica University of Timișoara, 300006 Timisoara, Romania
| | - Mihaela Crisan-Vida
- Faculty of Automation and Computers, Politehnica University of Timișoara, 300006 Timisoara, Romania
| | - Sergiu Nimara
- Faculty of Automation and Computers, Politehnica University of Timișoara, 300006 Timisoara, Romania
| | - Darius Barmayoun
- Research Center for Engineering and Management, Politehnica University of Timișoara, 300006 Timisoara, Romania
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