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Miller SA, Testen AL, Jacobs JM, Ivey MLL. Mitigating Emerging and Reemerging Diseases of Fruit and Vegetable Crops in a Changing Climate. PHYTOPATHOLOGY 2024; 114:917-929. [PMID: 38170665 DOI: 10.1094/phyto-10-23-0393-kc] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/05/2024]
Abstract
Fruit and vegetable crops are important sources of nutrition and income globally. Producing these high-value crops requires significant investment of often scarce resources, and, therefore, the risks associated with climate change and accompanying disease pressures are especially important. Climate change influences the occurrence and pressure of plant diseases, enabling new pathogens to emerge and old enemies to reemerge. Specific environmental changes attributed to climate change, particularly temperature fluctuations and intense rainfall events, greatly alter fruit and vegetable disease incidence and severity. In turn, fruit and vegetable microbiomes, and subsequently overall plant health, are also affected by climate change. Changing disease pressures cause growers and researchers to reassess disease management and climate change adaptation strategies. Approaches such as climate smart integrated pest management, smart sprayer technology, protected culture cultivation, advanced diagnostics, and new soilborne disease management strategies are providing new tools for specialty crops growers. Researchers and educators need to work closely with growers to establish fruit and vegetable production systems that are resilient and responsive to changing climates. This review explores the effects of climate change on specialty food crops, pathogens, insect vectors, and pathosystems, as well as adaptations needed to ensure optimal plant health and environmental and economic sustainability.
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Affiliation(s)
- Sally A Miller
- Department of Plant Pathology, The Ohio State University, Wooster, OH 44691
| | - Anna L Testen
- U.S. Department of Agriculture-Agricultural Research Service Application Technology Research Unit, Wooster, OH 44691
| | - Jonathan M Jacobs
- Department of Plant Pathology, The Ohio State University, Columbus, OH 43210
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Xu B, Mao Y, Wang W, Chen G. Intelligent weight prediction of cows based on semantic segmentation and back propagation neural network. Front Artif Intell 2024; 7:1299169. [PMID: 38348210 PMCID: PMC10859394 DOI: 10.3389/frai.2024.1299169] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2023] [Accepted: 01/15/2024] [Indexed: 02/15/2024] Open
Abstract
Accurate prediction of cattle weight is essential for enhancing the efficiency and sustainability of livestock management practices. However, conventional methods often involve labor-intensive procedures and lack instant and non-invasive solutions. This study proposed an intelligent weight prediction approach for cows based on semantic segmentation and Back Propagation (BP) neural network. The proposed semantic segmentation method leveraged a hybrid model which combined ResNet-101-D with the Squeeze-and-Excitation (SE) attention mechanism to obtain precise morphological features from cow images. The body size parameters and physical measurements were then used for training the regression-based machine learning models to estimate the weight of individual cattle. The comparative analysis methods revealed that the BP neural network achieved the best results with an MAE of 13.11 pounds and an RMSE of 22.73 pounds. By eliminating the need for physical contact, this approach not only improves animal welfare but also mitigates potential risks. The work addresses the specific needs of welfare farming and aims to promote animal welfare and advance the field of precision agriculture.
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Affiliation(s)
- Beibei Xu
- Agricultural Economics and Information Institute, Jiangxi Academy of Agriculture Sciences, Nanchang, China
- Department of Population Medicine and Diagnostic Sciences, Cornell University, Ithaca, NY, United States
| | - Yifan Mao
- Department of Mathematics and Statistics, McMaster University, Hamilton, ON, Canada
| | - Wensheng Wang
- Agricultural Information Institute, Chinese Academy of Agriculture Sciences, Beijing, China
| | - Guipeng Chen
- Agricultural Economics and Information Institute, Jiangxi Academy of Agriculture Sciences, Nanchang, China
- Jiangxi Province Engineering Research Center of Intelligent Perception in Agriculture, Jiangxi Academy of Agriculture Sciences, Nanchang, China
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Yang T, Zhou S, Xu A, Ye J, Yin J. An Approach for Plant Leaf Image Segmentation Based on YOLOV8 and the Improved DEEPLABV3. PLANTS (BASEL, SWITZERLAND) 2023; 12:3438. [PMID: 37836178 PMCID: PMC10574955 DOI: 10.3390/plants12193438] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/08/2023] [Revised: 09/22/2023] [Accepted: 09/28/2023] [Indexed: 10/15/2023]
Abstract
Accurate plant leaf image segmentation provides an effective basis for automatic leaf area estimation, species identification, and plant disease and pest monitoring. In this paper, based on our previous publicly available leaf dataset, an approach that fuses YOLOv8 and improved DeepLabv3+ is proposed for precise image segmentation of individual leaves. First, the leaf object detection algorithm-based YOLOv8 was introduced to reduce the interference of backgrounds on the second stage leaf segmentation task. Then, an improved DeepLabv3+ leaf segmentation method was proposed to more efficiently capture bar leaves and slender petioles. Densely connected atrous spatial pyramid pooling (DenseASPP) was used to replace the ASPP module, and the strip pooling (SP) strategy was simultaneously inserted, which enabled the backbone network to effectively capture long distance dependencies. The experimental results show that our proposed method, which combines YOLOv8 and the improved DeepLabv3+, achieves a 90.8% mean intersection over the union (mIoU) value for leaf segmentation on our public leaf dataset. When compared with the fully convolutional neural network (FCN), lite-reduced atrous spatial pyramid pooling (LR-ASPP), pyramid scene parsing network (PSPnet), U-Net, DeepLabv3, and DeepLabv3+, the proposed method improves the mIoU of leaves by 8.2, 8.4, 3.7, 4.6, 4.4, and 2.5 percentage points, respectively. Experimental results show that the performance of our method is significantly improved compared with the classical segmentation methods. The proposed method can thus effectively support the development of smart agroforestry.
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Affiliation(s)
- Tingting Yang
- College of Chemistry and Materials Engineering, Zhejiang Agriculture and Forestry University, Hangzhou 311800, China;
- Zhejiang Agriculture and Forestry University, Hangzhou 311800, China; (S.Z.); (J.Y.); (J.Y.)
- Key Laboratory of State Forestry and Grassland Administration on Forestry Sensing Technology and Intelligent Equipment, Hangzhou 311300, China
| | - Suyin Zhou
- Zhejiang Agriculture and Forestry University, Hangzhou 311800, China; (S.Z.); (J.Y.); (J.Y.)
- Key Laboratory of State Forestry and Grassland Administration on Forestry Sensing Technology and Intelligent Equipment, Hangzhou 311300, China
| | - Aijun Xu
- Zhejiang Agriculture and Forestry University, Hangzhou 311800, China; (S.Z.); (J.Y.); (J.Y.)
- Key Laboratory of State Forestry and Grassland Administration on Forestry Sensing Technology and Intelligent Equipment, Hangzhou 311300, China
| | - Junhua Ye
- Zhejiang Agriculture and Forestry University, Hangzhou 311800, China; (S.Z.); (J.Y.); (J.Y.)
| | - Jianxin Yin
- Zhejiang Agriculture and Forestry University, Hangzhou 311800, China; (S.Z.); (J.Y.); (J.Y.)
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Lu B, Lu J, Xu X, Jin Y. MixSeg: a lightweight and accurate mix structure network for semantic segmentation of apple leaf disease in complex environments. FRONTIERS IN PLANT SCIENCE 2023; 14:1233241. [PMID: 37780516 PMCID: PMC10535114 DOI: 10.3389/fpls.2023.1233241] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/01/2023] [Accepted: 08/18/2023] [Indexed: 10/03/2023]
Abstract
Introduction Semantic segmentation is effective in dealing with complex environments. However, the most popular semantic segmentation methods are usually based on a single structure, they are inefficient and inaccurate. In this work, we propose a mix structure network called MixSeg, which fully combines the advantages of convolutional neural network, Transformer, and multi-layer perception architectures. Methods Specifically, MixSeg is an end-to-end semantic segmentation network, consisting of an encoder and a decoder. In the encoder, the Mix Transformer is designed to model globally and inject local bias into the model with less computational cost. The position indexer is developed to dynamically index absolute position information on the feature map. The local optimization module is designed to optimize the segmentation effect of the model on local edges and details. In the decoder, shallow and deep features are fused to output accurate segmentation results. Results Taking the apple leaf disease segmentation task in the real scene as an example, the segmentation effect of the MixSeg is verified. The experimental results show that MixSeg has the best segmentation effect and the lowest parameters and floating point operations compared with the mainstream semantic segmentation methods on small datasets. On apple alternaria blotch and apple grey spot leaf image datasets, the most lightweight MixSeg-T achieves 98.22%, 98.09% intersection over union for leaf segmentation and 87.40%, 86.20% intersection over union for disease segmentation. Discussion Thus, the performance of MixSeg demonstrates that it can provide a more efficient and stable method for accurate segmentation of leaves and diseases in complex environments.
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Azam H, Tariq H, Shehzad D, Akbar S, Shah H, Khan ZA. Fully Automated Skull Stripping from Brain Magnetic Resonance Images Using Mask RCNN-Based Deep Learning Neural Networks. Brain Sci 2023; 13:1255. [PMID: 37759856 PMCID: PMC10526767 DOI: 10.3390/brainsci13091255] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2023] [Revised: 08/09/2023] [Accepted: 08/21/2023] [Indexed: 09/29/2023] Open
Abstract
This research comprises experiments with a deep learning framework for fully automating the skull stripping from brain magnetic resonance (MR) images. Conventional techniques for segmentation have progressed to the extent of Convolutional Neural Networks (CNN). We proposed and experimented with a contemporary variant of the deep learning framework based on mask region convolutional neural network (Mask-RCNN) for all anatomical orientations of brain MR images. We trained the system from scratch to build a model for classification, detection, and segmentation. It is validated by images taken from three different datasets: BrainWeb; NAMIC, and a local hospital. We opted for purposive sampling to select 2000 images of T1 modality from data volumes followed by a multi-stage random sampling technique to segregate the dataset into three batches for training (75%), validation (15%), and testing (10%) respectively. We utilized a robust backbone architecture, namely ResNet-101 and Functional Pyramid Network (FPN), to achieve optimal performance with higher accuracy. We subjected the same data to two traditional methods, namely Brain Extraction Tools (BET) and Brain Surface Extraction (BSE), to compare their performance results. Our proposed method had higher mean average precision (mAP) = 93% and content validity index (CVI) = 0.95%, which were better than comparable methods. We contributed by training Mask-RCNN from scratch for generating reusable learning weights known as transfer learning. We contributed to methodological novelty by applying a pragmatic research lens, and used a mixed method triangulation technique to validate results on all anatomical modalities of brain MR images. Our proposed method improved the accuracy and precision of skull stripping by fully automating it and reducing its processing time and operational cost and reliance on technicians. This research study has also provided grounds for extending the work to the scale of explainable artificial intelligence (XAI).
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Affiliation(s)
- Humera Azam
- Department of Computer Science, University of Karachi, Karachi 75270, Pakistan
| | - Humera Tariq
- Department of Radiology, University of Michigan, Ann Arbor, MI 48109, USA;
| | - Danish Shehzad
- Department of Computer Science, The Superior University, Lahore 54590, Pakistan
| | - Saad Akbar
- College of Computing and Information Sciences, Karachi Institute of Economics and Technology, Karachi 75190, Pakistan;
| | - Habib Shah
- Department of Computer Science, College of Computer Science, King Khalid University, Abha 61421, Saudi Arabia;
| | - Zamin Ali Khan
- Department of Computer Science, IQRA University, Karachi 71500, Pakistan;
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Arakawa T, Kamio S. Control Efficacy of UAV-Based Ultra-Low-Volume Application of Pesticide in Chestnut Orchards. PLANTS (BASEL, SWITZERLAND) 2023; 12:2597. [PMID: 37514212 PMCID: PMC10384239 DOI: 10.3390/plants12142597] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2023] [Revised: 06/28/2023] [Accepted: 07/05/2023] [Indexed: 07/30/2023]
Abstract
Pesticide spraying using unmanned aerial vehicles (UAVs) has been utilized in many crops, including fruit tree crops, because of its merits in terms of labor-saving and the low risk to the operator. However, its relevance to chestnut, one of the commercially significant fruit trees grown throughout Europe and Asia, has not been studied. In this work, we assessed the effectiveness of UAV-based ultra-low-volume pesticide application in chestnuts. We demonstrated the efficiency of three insecticides applied by a UAV on young chestnut trees. Interestingly, using a reduced amount of one of the pesticides, UAV-based spraying had greater control efficacy than conventional methods. The efficacy of ultra-low-volume pesticide application to adult trees was equivalent to using an air-blast sprayer. The spray coverage was compared in terms of spray volume (20 L vs. 40 L ha-1), flight method (straight flight vs. rotating flight for each tree), the size of the UAVs (8 L vs. 30 L in payload capacity), flow rate (3.8 L vs. 6.0 L min-1), and tree age in order to characterize the droplet deposition of UAV-based spraying. Overall, we showed that spraying pesticides using a UAV could effectively protect chestnut trees. It was debated how tree training, or tree height, affected pest control.
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Affiliation(s)
- Takumi Arakawa
- Gifu Prefectural Research Institute for Agricultural Technology in Hilly and Mountainous Areas, Nakatsugawa 508-0203, Japan
| | - Shinji Kamio
- Gifu Prefectural Research Institute for Agricultural Technology in Hilly and Mountainous Areas, Nakatsugawa 508-0203, Japan
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Fraiwan M, Faouri E, Khasawneh N. Classification of Corn Diseases from Leaf Images Using Deep Transfer Learning. PLANTS (BASEL, SWITZERLAND) 2022; 11:2668. [PMID: 36297692 PMCID: PMC9609100 DOI: 10.3390/plants11202668] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/04/2022] [Revised: 10/05/2022] [Accepted: 10/07/2022] [Indexed: 06/16/2023]
Abstract
Corn is a mass-produced agricultural product that plays a major role in the food chain and many agricultural products in addition to biofuels. Furthermore, households in poor countries may depend on small-scale corn cultivation for their basic needs. However, corn crops are vulnerable to diseases, which greatly affects farming yields. Moreover, extreme weather conditions and unseasonable temperatures can accelerate the spread of diseases. The pervasiveness and ubiquity of technology have allowed for the deployment of technological innovations in many areas. Particularly, applications powered by artificial intelligence algorithms have established themselves in many disciplines relating to image, signal, and sound recognition. In this work, we target the application of deep transfer learning in the classification of three corn diseases (i.e., Cercospora leaf spot, common rust, and northern leaf blight) in addition to the healthy plants. Using corn leaf image as input and convolutional neural networks models, no preprocessing or explicit feature extraction was required. Transfer learning using well-established and well-designed deep learning models was performed and extensively evaluated using multiple scenarios for splitting the data. In addition, the experiments were repeated 10 times to account for variability in picking random choices. The four classes were discerned with a mean accuracy of 98.6%. This and the other performance metrics exhibit values that make it feasible to build and deploy applications that can aid farmers and plant pathologists to promptly and accurately perform disease identification and apply the correct remedies.
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Affiliation(s)
- Mohammad Fraiwan
- Department of Computer Engineering, Jordan University of Science and Technology, Irbid 22110, Jordan
| | - Esraa Faouri
- Department of Computer Engineering, Jordan University of Science and Technology, Irbid 22110, Jordan
| | - Natheer Khasawneh
- Department of Software Engineering, Jordan University of Science and Technology, Irbid 22110, Jordan
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Cruz M, Mafra S, Teixeira E, Figueiredo F. Smart Strawberry Farming Using Edge Computing and IoT. SENSORS (BASEL, SWITZERLAND) 2022; 22:s22155866. [PMID: 35957425 PMCID: PMC9371401 DOI: 10.3390/s22155866] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2022] [Revised: 07/27/2022] [Accepted: 07/29/2022] [Indexed: 05/02/2023]
Abstract
Strawberries are sensitive fruits that are afflicted by various pests and diseases. Therefore, there is an intense use of agrochemicals and pesticides during production. Due to their sensitivity, temperatures or humidity at extreme levels can cause various damages to the plantation and to the quality of the fruit. To mitigate the problem, this study developed an edge technology capable of handling the collection, analysis, prediction, and detection of heterogeneous data in strawberry farming. The proposed IoT platform integrates various monitoring services into one common platform for digital farming. The system connects and manages Internet of Things (IoT) devices to analyze environmental and crop information. In addition, a computer vision model using Yolo v5 architecture searches for seven of the most common strawberry diseases in real time. This model supports efficient disease detection with 92% accuracy. Moreover, the system supports LoRa communication for transmitting data between the nodes at long distances. In addition, the IoT platform integrates machine learning capabilities for capturing outliers in collected data, ensuring reliable information for the user. All these technologies are unified to mitigate the disease problem and the environmental damage on the plantation. The proposed system is verified through implementation and tested on a strawberry farm, where the capabilities were analyzed and assessed.
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A Hybrid Model for Leaf Diseases Classification Based on the Modified Deep Transfer Learning and Ensemble Approach for Agricultural AIoT-Based Monitoring. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE 2022; 2022:6504616. [PMID: 35422854 PMCID: PMC9005283 DOI: 10.1155/2022/6504616] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/26/2022] [Accepted: 03/02/2022] [Indexed: 12/14/2022]
Abstract
As possible diseases develop on plant leaves, classification is constantly hampered by obstacles such as overfitting and low accuracy. To distinguish healthy products from defective ones, the agricultural industry requires precise and error-free analysis. Deep convolutional neural networks are an efficient model of autonomous feature extraction that has been shown to be fairly effective for detection and classification tasks. However, deep convolutional neural networks often require a large amount of training data, cannot be translated, and need a number of parameters to be specified and tweaked. This paper proposes a highly effective structure that can be applied to classifying multiple leaf diseases of plants and fruits during the feature extraction step. It uses a deep transfer learning model that has been modified to serve this purpose. In summary, we use model engineering (ME) to extract features. Multiple support vector machine (SVM) models are employed to enhance feature discrimination and processing speed. The kernel parameters of the radial basis function (RBF) are determined based on the selected model in the training step. PlantVillage and UCI datasets were used to analyze six leaf image sets containing healthy and diseased leaves of apple, corn, cotton, grape, pepper, and rice. The classification process resulted in approximately 90,000 images. During the experimental implementation phase, the results show the potential of a powerful model in classification operations, which will be beneficial for a variety of future leaf disease diagnostic applications for the agricultural industry.
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Abstract
With reference to the province of Novara in northwest Italy, this study aims to raise awareness about the environmental benefits that can derive from the use of alternative rice straw management practices to those currently in use, also highlighting how the use of these straws for energy purposes can be a valid alternative to the use of non-renewable resources. Using the LCA (Life Cycle Assessment) method, the two rice straw management practices currently in place (open field combustion and straw incorporation) were compared with an alternative strategy consisting in their collection and removal. The results show that removal of straw allows reducing the emissions of pollutants significantly: about one-hundredth of the PM (Particulate Matter) formation compared to the open-field burning and about one-tenth of the ozone depletion (CFCs, HCFCs, halons, etc.) compared to both the other two practices. Moreover, the LCA results show how the use of rice straw to produce energy as an alternative to conventional fuels helps to reduce the global warming potential of rice cultivation.
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Nawaz SA, Li J, Bhatti UA, Shoukat MU, Ahmad RM. AI-based object detection latest trends in remote sensing, multimedia and agriculture applications. FRONTIERS IN PLANT SCIENCE 2022; 13:1041514. [PMID: 37082514 PMCID: PMC10112523 DOI: 10.3389/fpls.2022.1041514] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/13/2022] [Accepted: 10/07/2022] [Indexed: 05/03/2023]
Abstract
Object detection is a vital research direction in machine vision and deep learning. The object detection technique based on deep understanding has achieved tremendous progress in feature extraction, image representation, classification, and recognition in recent years, due to this rapid growth of deep learning theory and technology. Scholars have proposed a series of methods for the object detection algorithm as well as improvements in data processing, network structure, loss function, and so on. In this paper, we introduce the characteristics of standard datasets and critical parameters of performance index evaluation, as well as the network structure and implementation methods of two-stage, single-stage, and other improved algorithms that are compared and analyzed. The latest improvement ideas of typical object detection algorithms based on deep learning are discussed and reached, from data enhancement, a priori box selection, network model construction, prediction box selection, and loss calculation. Finally, combined with the existing challenges, the future research direction of typical object detection algorithms is surveyed.
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Affiliation(s)
- Saqib Ali Nawaz
- School of Information and Communication Engineering, Hainan University, Haikou, China
- State Key Laboratory of Marine Resource Utilization in the South China Sea, Hainan University, Haikou, China
| | - Jingbing Li
- School of Information and Communication Engineering, Hainan University, Haikou, China
- State Key Laboratory of Marine Resource Utilization in the South China Sea, Hainan University, Haikou, China
- *Correspondence: Jingbing Li,
| | - Uzair Aslam Bhatti
- School of Information and Communication Engineering, Hainan University, Haikou, China
- State Key Laboratory of Marine Resource Utilization in the South China Sea, Hainan University, Haikou, China
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