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Abstract
The debate over whether viruses are living organisms tends to be paradigmatically determined. The metabolic paradigm denies that they are, while new research evidences the opposite. The purpose of this paper is to deliver a generic model for viral contexts that explains why viruses are alive. It will take a systems biology approach, with a qualitative part (using metacybernetics) to provide deeper explanations of viral contexts, and a quantitative part (using Fisher Information deriving from the variational principle of Extreme Physical Information) which is in principle able to take measurements and predict outcomes. The modelling process provides an extended view of the epigenetic processes of viruses. The generic systems biology model will depict viruses as autonomous entities with metaphysical processes of autopoietic self-organisation and adaptation, enabling them to maintain their physical viability and hence, within their populations, mutate and evolve. The autopoietic epigenetic processes are shown to describe their capability to change, and these are both qualitatively and quantitatively explored, the latter providing an approach to make measurements of physical phenomena under uncertainty. Viruses maintain their fitness when they are able to maintain their stability, and this is indicated by information flow efficacy. A brief case study is presented on the COVID-19 virus from the perspective that it is a living system, and this includes outcome predictions given Fisher Information conditions for known contexts.
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Abstract
This paper seeks to explain the nature of autopoiesis and its capacity to be efficacious, and to do this, it uses agency theory as embedded in metacybernetics. Agency, as a generalised intelligent adaptive living system, can anticipate the future once it has internalised a representation of an active contextual situation through autopoiesis. The role of observation and the nature of internalisation will be discussed, explaining that the latter has two states that determine agency properties of cognition. These are assimilation and accommodation. Assimilation is an information process and results in implicit cognition and recognition, whereas accommodation uses assimilated information delivering explicit cognition, recognition, and conscious awareness with rationality. Similarly, anticipation, a required property of the living, has two states, weak and strong, and these correspond to the two states of internalisation. Autopoiesis has various properties identifiable through the lenses of three autonomous but configurable schemas: General Collective Intelligence (GCI), Eigenform, and Extreme Physical Information (EPI). GCI is a pragmatic evolutionary approach concerned with a contextually connected purposeful and relatable set of task processes, each undertaken by a team of subagencies seeking collective fitness. Eigenform is a symbolic approach that is concerned with how observations can be suitably internalised and thus be used as a token to determine future behaviour, and how that which has been internalised can be adopted to anticipate the future. Extreme Physical Information (EPI) is an empirical approach concerned with acquiring information through observation of an unknown parameter through sampling regimes. The paper represents the conceptualisations of each schema in terms of autopoietic efficacy, and explores their configurative possibilities. It will adopt the ideas delivered to enhance explanations of the nature of autopoiesis and its efficacy within metacybernetics, providing a shift in thinking about autopoiesis and self-organisation.
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