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Kapytina A, Kolchenko M, Kerimbek N, Pozharskiy AS, Nizamdinova G, Taskuzhina A, Adilbayeva K, Khusnitdinova M, Amidullayeva M, Moisseyev R, Kachiyeva Z, Gritsenko D. Distribution of Wheat-Infecting Viruses and Genetic Variability of Wheat Streak Mosaic Virus and Barley Stripe Mosaic Virus in Kazakhstan. Viruses 2024; 16:96. [PMID: 38257796 PMCID: PMC10819362 DOI: 10.3390/v16010096] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2023] [Revised: 12/29/2023] [Accepted: 01/04/2024] [Indexed: 01/24/2024] Open
Abstract
Wheat is an essential cereal crop for the economy and food safety of Kazakhstan. In the present work, a screening of wheat and barley from different regions of Kazakhstan was conducted using newly developed specific primers for reverse transcription PCR and loop-mediated isothermal amplification (LAMP) assays. In total, 82 and 19 of 256 samples of wheat and barley tested positive for wheat streak mosaic virus (WSMV) and barley stripe mosaic virus (BSMV), respectively. A phylogenetic analysis using two independent methods revealed that most of the analyzed isolates had a European origin. Molecular data on the distribution and diversity of cereal viruses in Kazakhstan were obtained for the first time and will help lay a foundation for the implementation of genetics and genomics in wheat phyto-epidemiology in the country.
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Affiliation(s)
- Anastasiya Kapytina
- Laboratory of Molecular Biology, Institute of Plant Biology and Biotechnology, Almaty 050040, Kazakhstan; (A.K.); (N.K.); (M.A.); (Z.K.)
| | - Mariya Kolchenko
- Laboratory of Molecular Biology, Institute of Plant Biology and Biotechnology, Almaty 050040, Kazakhstan; (A.K.); (N.K.); (M.A.); (Z.K.)
| | - Nazym Kerimbek
- Laboratory of Molecular Biology, Institute of Plant Biology and Biotechnology, Almaty 050040, Kazakhstan; (A.K.); (N.K.); (M.A.); (Z.K.)
- Department of Molecular Biology and Genetics, Al Farabi Kazakh National University, Almaty 050040, Kazakhstan
| | - Alexandr S. Pozharskiy
- Laboratory of Molecular Biology, Institute of Plant Biology and Biotechnology, Almaty 050040, Kazakhstan; (A.K.); (N.K.); (M.A.); (Z.K.)
| | - Gulnaz Nizamdinova
- Laboratory of Molecular Biology, Institute of Plant Biology and Biotechnology, Almaty 050040, Kazakhstan; (A.K.); (N.K.); (M.A.); (Z.K.)
| | - Aisha Taskuzhina
- Laboratory of Molecular Biology, Institute of Plant Biology and Biotechnology, Almaty 050040, Kazakhstan; (A.K.); (N.K.); (M.A.); (Z.K.)
- Department of Molecular Biology and Genetics, Al Farabi Kazakh National University, Almaty 050040, Kazakhstan
| | - Kamila Adilbayeva
- Laboratory of Molecular Biology, Institute of Plant Biology and Biotechnology, Almaty 050040, Kazakhstan; (A.K.); (N.K.); (M.A.); (Z.K.)
| | - Marina Khusnitdinova
- Laboratory of Molecular Biology, Institute of Plant Biology and Biotechnology, Almaty 050040, Kazakhstan; (A.K.); (N.K.); (M.A.); (Z.K.)
| | - Malika Amidullayeva
- Laboratory of Molecular Biology, Institute of Plant Biology and Biotechnology, Almaty 050040, Kazakhstan; (A.K.); (N.K.); (M.A.); (Z.K.)
| | - Ruslan Moisseyev
- Laboratory of Molecular Biology, Institute of Plant Biology and Biotechnology, Almaty 050040, Kazakhstan; (A.K.); (N.K.); (M.A.); (Z.K.)
- Department of Molecular Biology and Genetics, Al Farabi Kazakh National University, Almaty 050040, Kazakhstan
| | - Zulfiya Kachiyeva
- Laboratory of Molecular Biology, Institute of Plant Biology and Biotechnology, Almaty 050040, Kazakhstan; (A.K.); (N.K.); (M.A.); (Z.K.)
- Research Institute of Applied and Fundamental Medicine, Kazakh National Medical University, Almaty 050000, Kazakhstan
| | - Dilyara Gritsenko
- Laboratory of Molecular Biology, Institute of Plant Biology and Biotechnology, Almaty 050040, Kazakhstan; (A.K.); (N.K.); (M.A.); (Z.K.)
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Hirsch J, Szadkowski M, Wipf-Scheibel C, Lepage E, Dumeaux P, Nguyen E, Verdin E, Moury B, Rimbaud L. Absence of Seed-Mediated Transmission of Cucumber Mosaic Virus in Espelette Pepper Crops despite Widespread and Recurrent Epidemics. Viruses 2023; 15:2159. [PMID: 38005837 PMCID: PMC10674872 DOI: 10.3390/v15112159] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2023] [Revised: 10/17/2023] [Accepted: 10/20/2023] [Indexed: 11/26/2023] Open
Abstract
In the past decade, severe epidemics of cucumber mosaic virus (CMV) have caused significant damage to Espelette pepper crops. This virus threatens the production of Espelette pepper, which plays a significant role in the local economy and touristic attractiveness of the French Basque Country, located in southwestern France. In 2021 and 2022, CMV was detected via double-antibody sandwich enzyme-linked immunosorbent assays (DAS-ELISAs) in Gorria pepper seed lots harvested from naturally infected fields scattered throughout the entire Espelette pepper production area. These seed lots were used in greenhouse grow-out tests to determine whether CMV could be transmitted to seedlings from contaminated seeds, using visual symptom assessment, DAS-ELISAs, and reverse transcription-polymerase chain reaction (RT-PCR). Despite the widespread occurrence of CMV in seeds of field samples, the grow-out experiments on a total of over 5000 seedlings yielded no evidence of seed transmission of local CMV isolates in Gorria pepper. Therefore, rather than seeds from infected pepper plants, sources of CMV inoculum in Espelette are more likely to be alternative hosts present in and around pepper fields that can allow for the survival of CMV during the off-season. These results have important epidemiological implications and will guide the choice of effective measures to control current epidemics.
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Affiliation(s)
- Judith Hirsch
- INRAE, Pathologie Végétale, 84140 Avignon, France; (M.S.); (C.W.-S.); (E.L.); (E.V.); (B.M.)
| | - Marion Szadkowski
- INRAE, Pathologie Végétale, 84140 Avignon, France; (M.S.); (C.W.-S.); (E.L.); (E.V.); (B.M.)
| | - Catherine Wipf-Scheibel
- INRAE, Pathologie Végétale, 84140 Avignon, France; (M.S.); (C.W.-S.); (E.L.); (E.V.); (B.M.)
| | - Elise Lepage
- INRAE, Pathologie Végétale, 84140 Avignon, France; (M.S.); (C.W.-S.); (E.L.); (E.V.); (B.M.)
- AgroParisTech, 91123 Palaiseau, France
- INRAE, BioSP, 84140 Avignon, France
| | - Paul Dumeaux
- Syndicat du Piment d’Espelette AOP, 64250 Espelette, France; (P.D.); (E.N.)
| | - Elodie Nguyen
- Syndicat du Piment d’Espelette AOP, 64250 Espelette, France; (P.D.); (E.N.)
| | - Eric Verdin
- INRAE, Pathologie Végétale, 84140 Avignon, France; (M.S.); (C.W.-S.); (E.L.); (E.V.); (B.M.)
| | - Benoît Moury
- INRAE, Pathologie Végétale, 84140 Avignon, France; (M.S.); (C.W.-S.); (E.L.); (E.V.); (B.M.)
| | - Loup Rimbaud
- INRAE, Pathologie Végétale, 84140 Avignon, France; (M.S.); (C.W.-S.); (E.L.); (E.V.); (B.M.)
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