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Karlicki M, Bednarska A, Hałakuc P, Maciszewski K, Karnkowska A. Spatio-temporal changes of small protist and free-living bacterial communities in a temperate dimictic lake: insights from metabarcoding and machine learning. FEMS Microbiol Ecol 2024; 100:fiae104. [PMID: 39039016 DOI: 10.1093/femsec/fiae104] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2024] [Revised: 06/21/2024] [Accepted: 07/19/2024] [Indexed: 07/24/2024] Open
Abstract
Microbial communities, which include prokaryotes and protists, play an important role in aquatic ecosystems and influence ecological processes. To understand these communities, metabarcoding provides a powerful tool to assess their taxonomic composition and track spatio-temporal dynamics in both marine and freshwater environments. While marine ecosystems have been extensively studied, there is a notable research gap in understanding eukaryotic microbial communities in temperate lakes. Our study addresses this gap by investigating the free-living bacteria and small protist communities in Lake Roś (Poland), a dimictic temperate lake. Metabarcoding analysis revealed that both the bacterial and protist communities exhibit distinct seasonal patterns that are not necessarily shaped by dominant taxa. Furthermore, machine learning and statistical methods identified crucial amplicon sequence variants (ASVs) specific to each season. In addition, we identified a distinct community in the anoxic hypolimnion. We have also shown that the key factors shaping the composition of analysed community are temperature, oxygen, and silicon concentration. Understanding these community structures and the underlying factors is important in the context of climate change potentially impacting mixing patterns and leading to prolonged stratification.
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Affiliation(s)
- Michał Karlicki
- Institute of Evolutionary Biology, Biological and Chemical Research Centre, Faculty of Biology, University of Warsaw, ul. Żwirki i Wigury 101, 02-089 Warsaw, Poland
| | - Anna Bednarska
- Institute of Evolutionary Biology, Biological and Chemical Research Centre, Faculty of Biology, University of Warsaw, ul. Żwirki i Wigury 101, 02-089 Warsaw, Poland
- Department of Hydrobiology, Institute of Functional Biology and Ecology, Biological and Chemical Research Centre, Faculty of Biology, University of Warsaw, ul. Żwirki i Wigury 101, 02-089 Warsaw, Poland
| | - Paweł Hałakuc
- Institute of Evolutionary Biology, Biological and Chemical Research Centre, Faculty of Biology, University of Warsaw, ul. Żwirki i Wigury 101, 02-089 Warsaw, Poland
| | - Kacper Maciszewski
- Institute of Evolutionary Biology, Biological and Chemical Research Centre, Faculty of Biology, University of Warsaw, ul. Żwirki i Wigury 101, 02-089 Warsaw, Poland
- Institute of Parasitology, Biology Centre, Czech Academy of Sciences, Branišovská 1160/31, 370 05 České Budějovice, Czech Republic
| | - Anna Karnkowska
- Institute of Evolutionary Biology, Biological and Chemical Research Centre, Faculty of Biology, University of Warsaw, ul. Żwirki i Wigury 101, 02-089 Warsaw, Poland
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Wang T, Zhang P, Zhang H, Wang H, Su X, Zhang M, Xu J. Warming and phosphorus enrichment alter the size structure and body stoichiometry of aquatic gastropods. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.979378] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022] Open
Abstract
Aquatic gastropods are important integral components of the macroinvertebrate community in freshwater ecosystems and play critical roles in freshwater ecosystems by contributing to biodiversity, nutrient cycling, and water quality. However, the variation of aquatic gastropods’ community structure under the combined effects of warming and nutrient enrichment remains largely unknown. To investigate this question, we performed an outdoor mesocosm experiment examining the interaction of warming (a 4.5 °C increase in mean temperature above ambient conditions) and nutrient enrichment (phosphorus addition) on the aquatic gastropods’ community and dominant population (Bellamya aeruginosa). We analyzed the changes in community dynamics (abundance and biomass), size structure, and stoichiometric traits (only B. aeruginosa). Results showed that phosphorus enrichment alone had a positive effect on the total abundance and biomass of gastropods, as well as the abundance and biomass of B. aeruginosa. Warming alone only produced a positive effect on total abundance. However, the combined effects of warming and phosphorus enrichment negatively affected the biomass and abundance of the whole gastropod community and the dominant gastropod population. The body mass of B. aeruginosa increased because of warming, whereas the body mass of the gastropod community negatively responded to warming. Phosphorus enrichment alone had no remarkable effects on body mass. The combined effects of warming and phosphorus enrichment negatively affected the whole community’s body mass but had no substantial effect on the body mass of B. aeruginosa. For body stoichiometric traits, warming or phosphorus enrichment alone produced positive effects on the nitrogen and phosphorus contents of B. aeruginosa. The combined effects caused adverse effects on the contents of the two elements. The effect of warming alone only decreased the ratio of nitrogen to phosphorus. Results suggested that the response levels in size structure between the gastropod community and the dominant population differed remarkably. Composition species shift was the main cause of the decrease in aquatic gastropods’ community size structure. The shift in species composition at the whole gastropod community level caused by warming and phosphorus enrichment may result in more complex and unpredicted consequences through cascade effects on the structure and function of freshwater ecosystems.
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Wu K, Ma F, Li Z, Wei C, Gan F, Du C. In-situ rapid monitoring of nitrate in urban water bodies using Fourier transform infrared attenuated total reflectance spectroscopy (FTIR-ATR) coupled with deconvolution algorithm. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2022; 317:115452. [PMID: 35662049 DOI: 10.1016/j.jenvman.2022.115452] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/16/2022] [Revised: 05/27/2022] [Accepted: 05/28/2022] [Indexed: 06/15/2023]
Abstract
Urban river and lake systems show important ecological function, and eutrophication frequently occurs and results from human activities due to the limited self-regulating ability. Since nitrate (NO3-) is one of the key factors causing water eutrophication, its rapid qualification plays critical role in the eutrophication control and management. In this study, water samples were collected from typical water bodies from Nanjing in different seasons, and Fourier transform infrared attenuated total reflectance spectroscopy (FTIR-ATR) was employed for the quantitative determination of NO3- coupled with algorithms of deconvolution and partial least squares regression (PLSR). Results indicated that the typical absorption band of NO3- at 1500-1200 cm-1 was observed and the intensity of the band around 1360 cm-1 was positively correlated with the concentration of NO3- through spectra deconvolution. PLSR models were established based on the deconvolution spectra, which were excellent with the correlation coefficients (R2) of more than 0.8886 and the ratio of prediction to deviation (RPD) of more than 2.76; it was found that the carbonate in water might impact the prediction due to its absorption around 1450 cm-1, but the prediction model performed well in condition that the carbonate content in a low level with less than 10 mg L-1. Significant temporal and spatial variations of NO3- were observed in the typical water bodies, and the Qinhuai River having the highest NO3- content, which mainly was influenced by human activities, and the impact of water pH and temperature were not significantly observed. Therefore, FTIR-ATR combined with deconvolution and PLSR, allowed a rapid determination of NO3- in urban water bodies, providing an alternative option for the monitoring of nitrate in natural water body, which will benefit the prevention and control of eutrophication.
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Affiliation(s)
- Ke Wu
- College of Environment and Ecology, Jiangsu Open University, Nanjing, 210017, China
| | - Fei Ma
- The State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science Chinese Academy of Sciences, Nanjing, 210008, China
| | - Zhenwang Li
- The State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science Chinese Academy of Sciences, Nanjing, 210008, China
| | - Cuilan Wei
- College of Environment and Ecology, Jiangsu Open University, Nanjing, 210017, China
| | - Fangqun Gan
- College of Environment and Ecology, Jiangsu Open University, Nanjing, 210017, China.
| | - Changwen Du
- The State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science Chinese Academy of Sciences, Nanjing, 210008, China; College of Advanced Agricultural Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China.
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González-Olalla JM, Medina-Sánchez JM, Carrillo P. Fluctuation at High Temperature Combined with Nutrients Alters the Thermal Dependence of Phytoplankton. MICROBIAL ECOLOGY 2022; 83:555-567. [PMID: 34145482 DOI: 10.1007/s00248-021-01787-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/25/2021] [Accepted: 06/01/2021] [Indexed: 06/12/2023]
Abstract
The Metabolic Theory of Ecology (MTE) predicts that the temperature increases exert a common effect on organisms stimulating metabolic rates, this being stronger for a heterotrophic than for an autotrophic metabolism. However, no available studies within the MTE framework have focused on organisms' response under fluctuation at high temperature interacting with factors such as nutrient availability, or how this interaction could affect the coexistence between mixotrophic and strict autotrophic phytoplankton. Hence, we assess how the phytoplankton metabolism and species composition are affected under scenarios of high temperature and fluctuation at high temperature, and how nutrients alter the direction and magnitude of such impact. For that, we use a mixed culture composed of two phytoplankton species: a strict autotrophic species and a mixotrophic species. Our results indicate that, in agreement with the MTE, only fluctuation at high temperature treatment registered a greater activation energy (Ea) value for respiration than for primary production and stimulated mixotrophic over strict autotrophic species abundance compared to control treatment. Remarkably, fluctuation at high temperature had a strong negative impact on the total abundance of the mixed-culture. The interaction between nutrient enrichment and fluctuation at high temperature increased abundance of the strict autotrophic species and overall species abundance, and led to Ea values that were higher in primary production than in respiration. Changes in community composition, enhanced by nutrient enrichment, could be behind this response, which can have implications in ecosystem functioning in a changing world.
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Affiliation(s)
- Juan Manuel González-Olalla
- University Institute of Water Research, University of Granada, C/Ramón y Cajal, 4, 18071, Granada, Spain
- Department of Ecology, Faculty of Sciences, University of Granada, Campus Fuentenueva s/n, 18071, Granada, Spain
| | - Juan Manuel Medina-Sánchez
- Department of Ecology, Faculty of Sciences, University of Granada, Campus Fuentenueva s/n, 18071, Granada, Spain.
| | - Presentación Carrillo
- University Institute of Water Research, University of Granada, C/Ramón y Cajal, 4, 18071, Granada, Spain
- Department of Ecology, Faculty of Sciences, University of Granada, Campus Fuentenueva s/n, 18071, Granada, Spain
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Tracing the Trophic Plasticity of the Coral-Dinoflagellate Symbiosis Using Amino Acid Compound-Specific Stable Isotope Analysis. Microorganisms 2021; 9:microorganisms9010182. [PMID: 33466994 PMCID: PMC7830491 DOI: 10.3390/microorganisms9010182] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2020] [Revised: 01/04/2021] [Accepted: 01/06/2021] [Indexed: 12/21/2022] Open
Abstract
The association between corals and photosynthetic dinoflagellates is one of the most well-known nutritional symbioses, but nowadays it is threatened by global changes. Nutritional exchanges are critical to understanding the performance of this symbiosis under stress conditions. Here, compound-specific δ15N and δ13C values of amino acids (δ15NAA and δ13CAA) were assessed in autotrophic, mixotrophic and heterotrophic holobionts as diagnostic tools to follow nutritional interactions between the partners. Contrary to what was expected, heterotrophy was mainly traced through the δ15N of the symbiont’s amino acids (AAs), suggesting that symbionts directly profit from host heterotrophy. The trophic index (TP) ranged from 1.1 to 2.3 from autotrophic to heterotrophic symbionts. In addition, changes in TP across conditions were more significant in the symbionts than in the host. The similar δ13C-AAs signatures of host and symbionts further suggests that symbiont-derived photosynthates are the main source of carbon for AAs synthesis. Symbionts, therefore, appear to be a key component in the AAs biosynthetic pathways, and might, via this obligatory function, play an essential role in the capacity of corals to withstand environmental stress. These novel findings highlight important aspects of the nutritional exchanges in the coral–dinoflagellates symbiosis. In addition, they feature δ15NAA as a useful tool for studies regarding the nutritional exchanges within the coral–symbiodiniaceae symbiosis.
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Wang T, Xu J, Molinos JG, Li C, Hu B, Pan M, Zhang M. A dynamic temperature difference control recording system in shallow lake mesocosm. MethodsX 2020; 7:100930. [PMID: 32577407 PMCID: PMC7303671 DOI: 10.1016/j.mex.2020.100930] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2020] [Revised: 05/11/2020] [Accepted: 05/15/2020] [Indexed: 11/16/2022] Open
Abstract
The effects of climate change on shallow lakes were studied via control experiments, such as a mesocosm study. Accurate control, monitoring and recording of temperature difference are crucial for the ongoing simulation of warming mesocosm. In this article, we provide a method that can adjust automatically and allow real-time monitoring and recording of water temperature. This system is composed of three main parts: the temperature sensor DS18B20, which measures and outputs the digital temperature value; a C8051F320 microcontroller, which acquires, analyses and stores the temperature data and performs control upon start and shutdown of external heating elements; and external heating devices perform heating until the target temperature difference is achieved.•This system can maintain a certain temperature difference under gradually changing external environmental conditions.•This system can achieve real-time online monitoring of water temperature.•This system has an excellent ability to resist disturbance.
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Affiliation(s)
- Tao Wang
- College of Fisheries, Huazhong Agricultural University, Hubei Provincial Engineering Laboratory for Pond Aquaculture, Freshwater Aquaculture Collaborative Innovation Center of Hubei Province, Wuhan 430070, PR China
| | - Jun Xu
- Donghu Experimental Station of Lake Ecosystems, State Key Laboratory of Freshwater Ecology and Biotechnology of China, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, PR China
| | - Jorge García Molinos
- Arctic Research Center, Hokkaido University, Sapporo 001-0021, Japan.,Global Station for Arctic Research, Global Institution for Collaborative Research and Education, Hokkaido University, Sapporo 001-0021, Japan.,Graduate School of Environmental Science, Hokkaido University, Sapporo 060-0810, Japan
| | - Chao Li
- College of Fisheries, Huazhong Agricultural University, Hubei Provincial Engineering Laboratory for Pond Aquaculture, Freshwater Aquaculture Collaborative Innovation Center of Hubei Province, Wuhan 430070, PR China
| | - Bowen Hu
- College of Fisheries, Huazhong Agricultural University, Hubei Provincial Engineering Laboratory for Pond Aquaculture, Freshwater Aquaculture Collaborative Innovation Center of Hubei Province, Wuhan 430070, PR China
| | - Meng Pan
- College of Fisheries, Huazhong Agricultural University, Hubei Provincial Engineering Laboratory for Pond Aquaculture, Freshwater Aquaculture Collaborative Innovation Center of Hubei Province, Wuhan 430070, PR China
| | - Min Zhang
- College of Fisheries, Huazhong Agricultural University, Hubei Provincial Engineering Laboratory for Pond Aquaculture, Freshwater Aquaculture Collaborative Innovation Center of Hubei Province, Wuhan 430070, PR China
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Cabrerizo MJ, Álvarez-Manzaneda MI, León-Palmero E, Guerrero-Jiménez G, de Senerpont Domis LN, Teurlincx S, González-Olalla JM. Warming and CO 2 effects under oligotrophication on temperate phytoplankton communities. WATER RESEARCH 2020; 173:115579. [PMID: 32059127 DOI: 10.1016/j.watres.2020.115579] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/18/2019] [Revised: 01/18/2020] [Accepted: 02/01/2020] [Indexed: 06/10/2023]
Abstract
Eutrophication, global warming, and rising carbon dioxide (CO2) levels are the three most prevalent pressures impacting the biosphere. Despite their individual effects are well-known, it remains untested how oligotrophication (i.e. nutrients reduction) can alter the planktonic community responses to warming and elevated CO2 levels. Here, we performed an indoor mesocosm experiment to investigate the warming × CO2 interaction under a nutrient reduction scenario (40%) mediated by an in-lake management strategy (i.e. addition of a commercial solid-phase phosphorus sorbent -Phoslock®) on a natural freshwater plankton community. Biomass production increased under warming × CO2 relative to present-day conditions; however, a Phoslock®-mediated oligotrophication reduced such values by 30-70%. Conversely, the warming × CO2 × oligotrophication interaction stimulated the photosynthesis by 20% compared to ambient nutrient conditions, and matched with higher resource use efficiency (RUE) and nutrient demand. Surprisingly, at a group level, we found that the multi-stressors scenario increased the photosynthesis in eukaryotes by 25%, but greatly impaired in cyanobacteria (ca. -25%). This higher cyanobacterial sensitivity was coupled with a reduced light harvesting efficiency and compensation point. Since Phoslock®-induced oligotrophication unmasked a strong negative warming × CO2 effect on cyanobacteria, it becomes crucial to understand how the interplay between climate change and nutrient abatement actions may alter the, ecosystems functioning. With an integrative understanding of these processes, policy makers will design more appropriate management strategies to improve the ecological status of aquatic ecosystems without compromising their ecological attributes and functioning.
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Affiliation(s)
- Marco J Cabrerizo
- Department of Ecology, Faculty of Sciences, University of Granada, Campus Fuentenueva, s/n, 18071, Granada, Spain; Centro de Investigación Mariña da Universidade de Vigo (CIM-UVigo), Illa de Toralla s/n, Vigo, 36331, Spain; Department of Ecology and Animal Biology, Faculty of Marine Sciences, University of Vigo, Campus Lagoas Marcosende, Vigo, 36310, Spain.
| | | | - Elizabeth León-Palmero
- Universitary Institute of Water Research, University of Granada, C/ Ramón y Cajal, P. O. 4, 18071, Granada, Spain.
| | - Gerardo Guerrero-Jiménez
- Universitary Institute of Water Research, University of Granada, C/ Ramón y Cajal, P. O. 4, 18071, Granada, Spain.
| | - Lisette N de Senerpont Domis
- Netherlands Institute of Ecology (NIOO-KNAW), Droevendaalsesteeg, 10, 6708 PB, Wageningen, the Netherlands; Aquatic Ecology and Water Quality Management group, Wageningen University, Wageningen, the Netherlands.
| | - Sven Teurlincx
- Netherlands Institute of Ecology (NIOO-KNAW), Droevendaalsesteeg, 10, 6708 PB, Wageningen, the Netherlands.
| | - Juan M González-Olalla
- Department of Ecology, Faculty of Sciences, University of Granada, Campus Fuentenueva, s/n, 18071, Granada, Spain.
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Effect of Water Column Stability on Surface Chlorophyll and Time Lags under Different Nutrient Backgrounds in a Deep Reservoir. WATER 2019. [DOI: 10.3390/w11071504] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Hydrodynamic conditions are considered to be very important in the control of algal blooms. Weekly or daily measurements may miss some important events in the hydrodynamic process, resulting in inaccurate evaluations of the impacts of hydrodynamics on phytoplankton. In this study, high-frequency (15-min interval) measurements were used to analyze the effect of water column stability on surface chlorophyll a (Chl a) and lag time under different nutrient backgrounds during a cyanobacterial bloom in the Three Gorges Reservoir, China. Cross-correlation analysis between the relative water column stability (RWCS) and Chl a was performed at different stages. The results showed that the RWCS above the euphotic depth influenced the surface Chl a concentration most significantly. A lower RWCS (<20) limited the increase in the Chl a concentration, and a higher RWCS caused a significant increase in Chl a only when nutrients were not limited (TN/TP < 29) and light and temperature conditions were suitable. It took a short time for a higher RWCS to significantly increase the surface Chl a concentration compared with a lower RWCS. When the waterbody had a very low Chl a concentration (almost 0), approximately 2 days were needed to significantly increase the Chl a concentration, while approximately only half an hour was needed when the background concentration of Chl a was slightly higher. During the bloom period, a decline in the RWCS significantly decreased the Chl a in a very short time (approximately half an hour). Reducing the water column stability could be a good approach to control cyanobacterial blooms.
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An Integrated Analysis of the Eutrophication Process in the Enxoé Reservoir within the DPSIR Framework. WATER 2018. [DOI: 10.3390/w10111576] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The Enxoé reservoir in southern Portugal has been exhibiting the highest trophic state in the country since its early years of operation. The problem has attracted water managers’ and researchers’ attention as the reservoir is the water supply for two municipalities. Extensive research was thus conducted over the last few years, including field monitoring and modelling at the plot, catchment, and reservoir scales. This study now frames all partial findings within the Driver-Pressure-State-Impact-Response (DPSIR) framework to better understand the eutrophication process in the Enxoé reservoir. Agriculture and grazing were found to have a reduced role in the eutrophication of the reservoir, with annual sediment and nutrient loads being comparably smaller or similar to those reported for other Mediterranean catchments. Flash floods were the main mechanism for transporting particle elements to the reservoir, being in some cases able to carry up three times the average annual load. However, the main eutrophication mechanisms in the reservoir were P release from deposited sediment under anoxic conditions and the process of internal recycling of organic matter and nutrients. Reducing the P load from the catchment and deposited sediment could lead to a mesotrophic state level in the reservoir. However, this level would only be sustainable by limiting the P internal load ability to reach the photic zone.
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