Influence of Season, Occupancy Pattern, and Technology on Structure and Composition of Nitrifying and Denitrifying Bacterial Communities in Advanced Nitrogen-Removal Onsite Wastewater Treatment Systems

Multi-omics analysis on seasonal variations of the biofilm microbial community in a full-scale pre-denitrification biofilter

The seasonal variations of biofilm communities in a municipal wastewater treatment plant were investigated using multi-omics techniques. The abundance of the main phyla of microorganisms varied with summer (July 2019) and winter (January 2019) samples considerably, the Bacteroidetes enriched in winter and Chloroflexi in summer. The results of metaproteomic and metagenomic showed that most of the functional microorganisms belonged to the Betaproteobacteria class, and the enrichment of Flavobacteria class in winter guaranteed the stability of denitrification performance to some extent. Seasonal variations affected the proteomic expression profiling, a total of 2835 differentially expressed proteins identified were significantly enriched in quorum sensing, two-component system, ribosome, benzoate degradation, butanoate metabolism, tricarboxylic acid cycle (TCA cycle), and cysteine and methionine metabolism pathways. With the expression of nitrogen metabolic proteins decreases in winter, the overall expression of denitrification-related enzymes in winter was much lower than that in summer, the nitrogen metabolism pathway varied significantly. Seasonal variations also induced the alteration of the biofilm metabolite profile; a total of 66 differential metabolites, 8 potential biomarkers, and 8 perturbed metabolic pathways such as TCA cycle were detected. It was found that most of the perturbed pathways are directly related to nitrogen metabolism, and several amino acids and organic acids associated with the TCA cycle were significantly perturbed, the accumulation of TCA cycle intermediates, ornithine, and L-histidine in winter might be conducive to resisting cold temperatures. Furthermore, the correlation between biofilm microbial communities and metabolites was identified by the combined analysis of metabolomic and metaproteomic. The differences of microbial community structure, function, and metabolism between winter and summer in a full-scale pre-denitrification biofilter were revealed for the first time, strengthening our understanding of the microbial ecology of biofilm communities.

Matrix-associated microbial communities in a nitrogen-removing on-site wastewater treatment system are largely structured by niche processes

On-site wastewater treatment systems (OWTSs) can be designed to promote microbial communities with naturally occurring metabolic functions desirable to wastewater treatment. Among such OWTSs are nitrogen-removing biofilters (NRBs), comprising a sand layer overlying a sand-lignocellulose (sand-lc) layer and intended to promote sequential nitrification and denitrification. The design of NRBs is based on the hypothesis that niche processes like environmental selection strongly structure the microbial communities, which predicts that immigrating wastewater communities and matrix-associated communities will be distinct and that the matrix communities in the two layers will be distinct. We characterized NRB microbial communities by 16S ribosomal RNA amplicon sequencing. Selection of the matrix-associated communities was indicated by clear differences from the immigrating community. For matrix-associated communities, alpha and beta diversity differed between the matrix layers, as did the relative abundances of many functional groups and genera. Functional groups with strict metabolisms were nearly exclusively detected in either the sand (ammonia and nitrite oxidizers) or sand-lc layer (methanogens), consistent with the niche hypothesis. Contrary to expectations, denitrifiers as a functional group were not present at greater relative abundance in the sand-lc than sand matrix because of a portfolio effect: some denitrifying genera were more abundant in the sand layer, whereas others were more abundant in the sand-lc layer. This study reveals niche processes acting at different levels of community organization for different biogeochemical functions, a crucial consideration in designing effective and reliable OWTSs to mitigate nitrogen pollution.

Efficient nitrogen removal from onsite wastewater by a novel continuous flow biofilter

Soil-based passive biofiltration system is an economically feasible technology for nitrogen removal from onsite wastewater. However, the conventional design requires a large system footprint with limited treatment capacity. In this study, a novel continuous flow biofilter (CFB) with adjustable recirculation and continuous flow pattern was developed for onsite wastewater treatment with a small footprint. Efficient total nitrogen removal (80.1-97.5%) was observed at various hydraulic loadings (0.03-0.12 m³ m^-2 d^-1), nitrogen loadings (1.1-8.6 g N m^-2 d^-1) and recycle ratios (2-3) when treating septic tank effluent (STE), with low effluent TN (0.7-13.6 mg N L^-1). Nitrous oxide was observed in the denitrification effluent indicating incomplete denitrification at elevated dissolved oxygen levels (3.3-5.8 mg L^-1). Nitrogen removal rate (2.9-7.0 g N m^-2 d^-1) and ammonium removal rate (2.4-7.2 g N m^-2 d^-1) were positively correlated with nitrogen loadings increase (1.1-8.6 g N m^-2 d^-1) but were not significantly impacted by the hydraulic loading rate change (0.08-0.12 m³ m^-2 d^-1). The total biomass abundance and nitrifying microorganisms decreased significantly as the nitrification columns depth increased, while homogeneous microbial distribution was observed in the denitrification columns. The abundance of ammonium oxidizing archaea (AOA) increased significantly at increased hydraulic and nitrogen loading rate, while the ammonium oxidizing bacteria (AOB) abundance remained steady. The abundance of functional genes involved in denitrification process (nirS, nirK and nosZ) responded differently when hydraulic and nitrogen loading rate changes. Collectively, this study suggested the CFB could efficiently remove nitrogen from onsite wastewater with fluctuating influent compositions and various hydraulic loadings.

Spatial Variation of the Microbial Community Structure of On-Site Soil Treatment Units in a Temperate Climate, and the Role of Pre-treatment of Domestic Effluent in the Development of the Biomat Community

The growth of microbial mats or “biomats” has been identified as an essential component in the attenuation of pollutants within the soil treatment unit (STU) of conventional on-site wastewater treatment systems (OWTSs). This study aimed to characterize the microbial community which colonizes these niches and to determine the influence of the pre-treatment of raw-domestic wastewater on these communities. This was achieved through a detailed sampling campaign of two OWTSs. At each site, the STU areas were split whereby half received effluent directly from septic tanks, and half received more highly treated effluents from packaged aerobic treatment systems [a coconut husk media filter on one site, and a rotating biodisc contactor (RBC) on the other site]. Effluents from the RBC had a higher level of pre-treatment [~90% Total Organic Carbon (TOC) removal], compared to the media filter (~60% TOC removal). A total of 92 samples were obtained from both STU locations and characterized by 16S rRNA gene sequencing analysis. The fully treated effluent from the RBC resulted in greater microbial community richness and diversity within the STUs compared to the STUs receiving partially treated effluents. The microbial community structure found within the STU receiving fully treated effluents was significantly different from its septic tank, primary effluent counterpart. Moreover, the distance along each STU appears to have a greater impact on the community structure than the depth in each STU. Our findings highlight the spatial variability of diversity, Phylum- and Genus-level taxa, and functional groups within the STUs, which supports the assumption that specialized biomes develop around the application of effluents under different degrees of treatment and distance from the source. This research indicates that the application of pre-treated effluents infers significant changes in the microbial community structure, which in turn has important implications for the functionality of the STU, and consequently the potential risks to public health and the environment.

Mesocosm- and Field-Scale Evaluation of Lignocellulose- Amended Soil Treatment Areas for Removal of Nitrogen from Wastewater

Non-proprietary N-removal onsite wastewater treatment systems are less costly than proprietary systems, increasing the likelihood of adoption to lower N inputs to receiving waters. We assessed the capacity of non-proprietary lignocellulose-amended soil treatment areas (LCSTAs)—a 45-cm-deep layer of sand above a 45-cm-deep layer of sand and sawdust—to lower the concentration of total N (TN) in septic tank effluent (STE) at mesocosm and field scales. The mesocosm received wastewater for two years and had a median effluent TN concentration of 3.1 mg/L and TN removal of 60–100%, meeting regulatory standards of 19 mg/L or 50% removal. Removal varied inversely with temperature, and was lower below 10 °C. Removal was higher in the mesocosm than in five field sites monitored for 12–42 months. Median effluent TN concentration and removal met the standard in three continuously-occupied homes but not for two seasonally-occupied homes. Sites differed in temporal pattern of TN removal, and in four of five sites TN removal was greater—and effluent TN concentration lower—in the LCSTA than in a control STA containing only sand. The performance of non-proprietary LCSTAs was comparable to that for proprietary systems, suggesting that these may be a viable, more affordable alternative for lowering N inputs to receiving waters.

Greenhouse gas emissions from advanced nitrogen-removal onsite wastewater treatment systems

Advanced onsite wastewater treatment systems (OWTS) designed to remove nitrogen from residential wastewater play an important role in protecting environmental and public health. Nevertheless, the microbial processes involved in treatment produce greenhouse gases (GHGs) that contribute to global climate change, including CO₂, CH₄, N₂O. We measured GHG emissions from 27 advanced N-removal OWTS in the towns of Jamestown and Charlestown, Rhode Island, USA, and assessed differences in flux based on OWTS technology, home occupancy (year-round vs. seasonal), and zone within the system (oxic vs. anoxic/hypoxic). We also investigated the relationship between flux and wastewater properties. Flux values for CO₂, CH₄, and N₂O ranged from -0.44 to 61.8, -0.0029 to 25.3, and -0.02 to 0.23 μmol GHG m^-2 s^-1, respectively. CO₂ and N₂O flux varied among technologies, whereas occupancy pattern did not significantly impact any GHG fluxes. CO₂ and CH₄ - but not N₂O - flux was significantly higher in the anoxic/hypoxic zone than in the oxic zone. Greenhouse gas fluxes in the oxic zone were not related to any wastewater properties. CO₂ and CH₄ flux from the anoxic/hypoxic zone peaked at ~22-23 °C, and was negatively correlated with dissolved oxygen levels, the latter suggesting that CO₂ and CH₄ flux result primarily from anaerobic respiration. Ammonium concentration and CH₄ flux were positively correlated, likely due to inhibition of CH₄ oxidation by NH₄⁺. N₂O flux in the anoxic/hypoxic zone was not correlated to any wastewater property. We estimate that advanced N-removal OWTS contribute 262 g CO₂ equivalents capita^-1 day^-1, slightly lower than emissions from conventional OWTS. Our results suggest that technology influences CO₂ and N₂O flux and zone influences CO₂ and CH₄ flux, while occupancy pattern does not appear to impact GHG flux. Manipulating wastewater properties, such as temperature and dissolved oxygen, may help mitigate GHG emissions from these systems.