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Babich TL, Popova NM, Sokolova DS, Perepelov AV, Safonov AV, Nazina TN. Microbial and Monosaccharide Composition of Biofilms Developing on Sandy Loams from an Aquifer Contaminated with Liquid Radioactive Waste. Microorganisms 2024; 12:275. [PMID: 38399679 PMCID: PMC10892373 DOI: 10.3390/microorganisms12020275] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2024] [Revised: 01/25/2024] [Accepted: 01/26/2024] [Indexed: 02/25/2024] Open
Abstract
The development of microbial biofilms increases the survival of microorganisms in the extreme conditions of ecosystems contaminated with components of liquid radioactive waste (LRW) and may contribute to the successful bioremediation of groundwater. The purpose of this work was to compare the composition of the microorganisms and the exopolysaccharide matrix of the biofilms formed on sandy loams collected at the aquifer from a clean zone and from a zone with nitrate and radionuclide contamination. The aquifer is polluted from the nearby surface repository for liquid radioactive waste (Russia). The phylogenetic diversity of prokaryotes forming biofilms on the sandy loams' surface was determined during 100 days using high-throughput sequencing of the V4 region of the 16S rRNA genes. Scanning electron microscopy was used to study the development of microbial biofilms on the sandy loams. The ratio of proteins and carbohydrates in the biofilms changed in the course of their development, and the diversity of monosaccharides decreased, depending on the contamination of the sites from which the rocks were selected. The presence of pollution affects biofilm formation and EPS composition along with the dominant taxa of microorganisms and their activity. Biofilms establish a concentration gradient of the pollutant and allow the microorganisms involved to effectively participate in the reduction of nitrate and sulfate; they decrease the risk of nitrite accumulation during denitrification and suppress the migration of radionuclides. These biofilms can serve as an important barrier in underground water sources, preventing the spread of pollution. Pure cultures of microorganisms capable of forming a polysaccharide matrix and reducing nitrate, chromate, uranyl, and pertechnetate ions were isolated from the biofilms, which confirmed the possibility of their participation in the bioremediation of the aquifer from nonradioactive waste components and the decrease in the radionuclides' migration.
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Affiliation(s)
- Tamara L. Babich
- Winogradsky Institute of Microbiology, Research Center of Biotechnology, Russian Academy of Sciences, Moscow 119071, Russia; (T.L.B.); (D.S.S.)
| | - Nadezhda M. Popova
- A.N. Frumkin Institute of Physical Chemistry and Electrochemistry, Russian Academy of Sciences, Moscow 119071, Russia; (N.M.P.); (A.V.S.)
| | - Diyana S. Sokolova
- Winogradsky Institute of Microbiology, Research Center of Biotechnology, Russian Academy of Sciences, Moscow 119071, Russia; (T.L.B.); (D.S.S.)
| | - Andrei V. Perepelov
- N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow 119991, Russia;
| | - Alexey V. Safonov
- A.N. Frumkin Institute of Physical Chemistry and Electrochemistry, Russian Academy of Sciences, Moscow 119071, Russia; (N.M.P.); (A.V.S.)
| | - Tamara N. Nazina
- Winogradsky Institute of Microbiology, Research Center of Biotechnology, Russian Academy of Sciences, Moscow 119071, Russia; (T.L.B.); (D.S.S.)
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Zelenina D, Kuzmenkova N, Sobolev D, Boldyrev K, Namsaraev Z, Artemiev G, Samylina O, Popova N, Safonov A. Biogeochemical Factors of Cs, Sr, U, Pu Immobilization in Bottom Sediments of the Upa River, Located in the Zone of Chernobyl Accident. BIOLOGY 2022; 12:biology12010010. [PMID: 36671703 PMCID: PMC9854679 DOI: 10.3390/biology12010010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/13/2022] [Revised: 12/14/2022] [Accepted: 12/17/2022] [Indexed: 12/24/2022]
Abstract
Laboratory modeling of Cs, Sr, U, Pu immobilization by phytoplankton of the river Upa, affected after the Chernobyl accident, has been carried out. Certain conditions are selected for strong fixation of radionuclides in bottom sediments due to biogeochemical processes. The process of radionuclide removal from the water phase via precipitation was based on their accumulation by phytoplankton, stimulated by nitrogen and phosphorus sources. After eight days of stimulation, planktonic phototrophic biomass, dominated by cyanobacteria of the genus Planktothrix, appears in the water sample. The effectiveness of U, Pu and Sr purification via their transfer to bottom sediment was observed within one month. The addition of ammonium sulfate and phosphate (Ammophos) led to the activation of sulfate- and iron-reducing bacteria of the genera Desulfobacterota, Desulfotomaculum, Desulfosporomusa, Desulfosporosinus, Thermodesulfobium, Thiomonas, Thiobacillus, Sulfuritallea, Pseudomonas, which form sulphide ferrous precipitates such as pyrite, wurtzite, hydrotroillite, etc., in anaerobic bottom sediments. The biogenic mineral composition of the sediments obtained under laboratory conditions was verified via thermodynamic modeling.
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Affiliation(s)
- Darya Zelenina
- A.N. Frumkin Institute of Physical Chemistry and Electrochemistry, RAS, Obrucheva Str. 40, Moscow 117342, Russia
| | - Natalia Kuzmenkova
- Radiochemistry Division, Faculty of Chemistry, Lomonosov Moscow State University, Leninskie Gory, Moscow 119991, Russia
- V. Vernadsky Institute of Geochemistry and Analytical Chemistry, RAS, Kosygina Str. 19, Moscow 119991, Russia
| | - Denis Sobolev
- Nuclear Safety Institute, RAS, Bolshaya Tulskaya St. 52, Moscow 115191, Russia
| | - Kirill Boldyrev
- Nuclear Safety Institute, RAS, Bolshaya Tulskaya St. 52, Moscow 115191, Russia
| | - Zorigto Namsaraev
- Kurchatov Centre for Genome Research, NRC Kurchatov Institute, Akad. Kurchatov Sq., 2, Moscow 123098, Russia
| | - Grigoriy Artemiev
- A.N. Frumkin Institute of Physical Chemistry and Electrochemistry, RAS, Obrucheva Str. 40, Moscow 117342, Russia
| | - Olga Samylina
- Winogradsky Institute of Microbiology, Research Centre for Biotechnology, Russian Academy of Sciences, Prospect 60-Letiya Oktyabrya 7/2, Moscow 117312, Russia
| | - Nadezhda Popova
- A.N. Frumkin Institute of Physical Chemistry and Electrochemistry, RAS, Obrucheva Str. 40, Moscow 117342, Russia
| | - Alexey Safonov
- A.N. Frumkin Institute of Physical Chemistry and Electrochemistry, RAS, Obrucheva Str. 40, Moscow 117342, Russia
- Correspondence:
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Han T, Chen W, Cai Y, Lv Z, Zhang Y, Tan X. Immobilization of uranium during the deposition of carbonated hydroxyapatite. J Taiwan Inst Chem Eng 2022. [DOI: 10.1016/j.jtice.2022.104331] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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