The correlation between the micelle morphology of surface-active ionic liquids with self-assembly and thermodynamic characteristics: coarse-grained MD simulation and experiment

Surface-active ionic liquids (SAILs) show great promise as novel green solvents due to their low vapor pressure, high thermal stability, high electrical conductivity, and bio-friendly nature to replace traditional volatile organic solvents in industrial processes. In the present work, the combination of coarse-grained (CG) molecular dynamics (MD) simulations with conductivity measurements was employed to explain the correlation between the micelle morphology and physicochemical and thermodynamic properties of self-assembly. A homologous series of SAIL molecules, 1-n-alkyl-3-methylimidazolium bromide [Cnmim][Br] (n = 4, 6, 8, 10, and 12), were chosen at various concentrations to shed light on this issue. Simultaneously two factors of concentration and alkyl chain length affected the morphology to control the physical and thermodynamic features. Moreover, the nature of the headgroup for two SAILs with the longest alkyl chain was assessed by shifting from imidazolium into ammonium. First, the critical micelle concentration (CMC), the degree of counterion dissociation of micelles, and the standard Gibbs energy of micellization of SAILs were determined using conductivity data. The micelle morphology such as the aggregation number, micelle radius, and moment of inertia was computed before, around, and after the CMC by MD simulation. Simulated results in accordance with the experimental measurements provide a quantitative understanding of the micellar properties. Increasing the alkyl chain length was associated with a non-spherical bigger micelle while the ammonium-based surfactant with a lower repulsion between neighboring monomers in micelles induced bigger and more spherical aggregates. Raising the SAIL concentration did not considerably influence the sphericity of the micelle except for the SAIL with the longest tail. The umbrella sampling method calculated the potential of mean force (PMF) for pulling a monomer of SAIL from a pre-assembled micelle into the solution. The dissociation energy of a SAIL monomer from a micelle increased with the tail length or with shifting into the ammonium head group and was substantially influenced by micelle morphology. Comparison between a sphere micelle with an oval one demonstrated that the dissociation of a SAIL monomer from a non-spherical shape needed a higher amount of energy. An improved understanding of how the shape of the SAIL micelles controls the physicochemical properties and stability helps to extend their application to different chemical processes.

Screening of indole derivatives as the potent anticancer agents on dihydrofolate reductase: pharmaco-informatics and molecular dynamics simulation

Dihydrofolate reductase (DHFR) is a ubiquitous cellular enzyme involved in the biosynthesis of nucleotide and protein precursors, thus, the inhibition of human DHFR can be a promising strategy in cancer treatment. The design of effective anticancer drugs is an urgent need today according to the high spread of cancer. The indole molecule with diverse mechanisms of action and anticancer properties is one of the efficient pharmacophores in drug design. Hence, a virtual library of indole derivatives as a scaffold was selected for designing safer and more effective anticancer drugs against DHFR in this work. All indole derivatives utilized in the library design were selected regarding appreciable tumor growth inhibition. Structure-activity relationship (SAR), docking energy, ADMET (absorption, distribution, metabolism, excretion, and toxicity) parameters, and effective non-covalent interactions were used to identify potential anticancer with indole scaffold. Results showed a higher number of indole moieties provide a strong attachment to the DHFR binding pocket and therefore more effective anticancer activity. The indole scaffold in combination with dichlorobenzene improves DHFR inhibition whereas barbituric acid weakens inhibition activity. In the following to validate the docking results, Molecular dynamics (MD) simulation and molecular mechanics generalized-Born surface area (MM-GBSA) indicated the permanent stability of the selected ligands into the DHFR binding pocket and the key amino acids. Therefore, promising pharmacophores based on indole-DHFR interactions were discovered, and the outcome could be useful in guiding future in vitro and in vivo drug discovery in cancer medicine.Communicated by Ramaswamy H. Sarma.